Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:28:45 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the RCAS package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1465/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RCAS 1.16.0 (landing page) Bora Uyar
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: RCAS |
Version: 1.16.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:RCAS.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings RCAS_1.16.0.tar.gz |
StartedAt: 2021-05-06 05:00:02 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 05:11:40 -0400 (Thu, 06 May 2021) |
EllapsedTime: 697.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RCAS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:RCAS.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings RCAS_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/RCAS.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RCAS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RCAS’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RCAS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runMotifDiscovery 53.708 0.636 45.790 getMotifSummaryTable 20.860 0.560 65.869 getFeatureBoundaryCoverageMulti 20.512 0.304 20.848 calculateCoverageProfileList 17.704 0.172 17.911 calculateCoverageProfile 14.212 0.228 14.453 findDifferentialMotifs 13.240 0.652 16.876 summarizeQueryRegionsMulti 11.596 0.244 29.514 summarizeQueryRegions 11.172 0.376 11.573 getTargetedGenesTable 10.100 0.312 10.396 getTxdbFeaturesFromGRanges 9.848 0.284 10.147 getFeatureBoundaryCoverage 5.876 0.200 6.089 getFeatureBoundaryCoverageBin 5.684 0.132 5.830 createDB 4.724 0.160 21.897 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RCAS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL RCAS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘RCAS’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCAS)
RCAS.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RCAS) Loading required package: plotly Loading required package: ggplot2 Attaching package: 'plotly' The following object is masked from 'package:ggplot2': last_plot The following object is masked from 'package:stats': filter The following object is masked from 'package:graphics': layout Loading required package: DT Loading required package: data.table > > test_check("RCAS") [ FAIL 0 | WARN 11 | SKIP 0 | PASS 48 ] > > proc.time() user system elapsed 48.256 1.396 54.608
RCAS.Rcheck/RCAS-Ex.timings
name | user | system | elapsed | |
calculateCoverageProfile | 14.212 | 0.228 | 14.453 | |
calculateCoverageProfileList | 17.704 | 0.172 | 17.911 | |
checkSeqDb | 0.492 | 0.020 | 0.991 | |
createControlRegions | 0.26 | 0.00 | 0.26 | |
createDB | 4.724 | 0.160 | 21.897 | |
discoverFeatureSpecificMotifs | 0 | 0 | 0 | |
extractSequences | 2.132 | 0.128 | 2.264 | |
findDifferentialMotifs | 13.240 | 0.652 | 16.876 | |
findEnrichedFunctions | 0.820 | 0.056 | 4.025 | |
generateKmers | 0 | 0 | 0 | |
getFeatureBoundaryCoverage | 5.876 | 0.200 | 6.089 | |
getFeatureBoundaryCoverageBin | 5.684 | 0.132 | 5.830 | |
getFeatureBoundaryCoverageMulti | 20.512 | 0.304 | 20.848 | |
getIntervalOverlapMatrix | 1.684 | 0.140 | 2.267 | |
getMotifSummaryTable | 20.860 | 0.560 | 65.869 | |
getTargetedGenesTable | 10.100 | 0.312 | 10.396 | |
getTxdbFeaturesFromGRanges | 9.848 | 0.284 | 10.147 | |
importBed | 0.232 | 0.000 | 0.235 | |
importBedFiles | 1.360 | 0.008 | 1.372 | |
importGtf | 0 | 0 | 0 | |
plotFeatureBoundaryCoverage | 4.864 | 0.044 | 4.914 | |
queryGff | 0.888 | 0.044 | 0.933 | |
runMotifDiscovery | 53.708 | 0.636 | 45.790 | |
runReport | 0 | 0 | 0 | |
runReportMetaAnalysis | 1.488 | 0.404 | 2.127 | |
summarizeQueryRegions | 11.172 | 0.376 | 11.573 | |
summarizeQueryRegionsMulti | 11.596 | 0.244 | 29.514 | |