Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:36:36 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the RTNsurvival package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1595/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RTNsurvival 1.14.1 (landing page) Clarice Groeneveld
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: RTNsurvival |
Version: 1.14.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.14.1.tar.gz |
StartedAt: 2021-05-06 05:44:40 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 05:48:52 -0400 (Thu, 06 May 2021) |
EllapsedTime: 251.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RTNsurvival.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.14.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/RTNsurvival.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RTNsurvival/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RTNsurvival’ version ‘1.14.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RTNsurvival’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RTNsurvival.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RTNsurvival ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘RTNsurvival’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNsurvival)
RTNsurvival.Rcheck/tests/runTests.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("RTNsurvival") RUNIT TEST PROTOCOL -- Thu May 6 05:48:41 2021 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : RTNsurvival RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 12.008 0.584 12.601
RTNsurvival.Rcheck/RTNsurvival-Ex.timings
name | user | system | elapsed | |
TNS.data | 0.002 | 0.001 | 0.003 | |
hclust_semisupervised | 0.083 | 0.004 | 0.088 | |
tni2tnsPreprocess-methods | 0.818 | 0.017 | 0.840 | |
tnsAREA3-methods | 1.167 | 0.051 | 1.222 | |
tnsCox-methods | 1.617 | 0.135 | 1.755 | |
tnsCoxInteraction-methods | 1.233 | 0.077 | 1.312 | |
tnsGSEA2-methods | 1.679 | 0.123 | 1.809 | |
tnsGet-methods | 1.183 | 0.079 | 1.263 | |
tnsInteraction-methods | 1.250 | 0.065 | 1.316 | |
tnsKM-methods | 1.754 | 0.078 | 1.835 | |
tnsKmInteraction-methods | 1.634 | 0.129 | 1.768 | |
tnsPlotCovariates-methods | 3.187 | 0.114 | 3.308 | |
tnsPlotCox-methods | 1.252 | 0.105 | 1.454 | |
tnsPlotCoxInteraction-methods | 1.165 | 0.079 | 1.245 | |
tnsPlotGSEA2-methods | 4.339 | 0.212 | 4.556 | |
tnsPlotKM-methods | 1.239 | 0.073 | 1.314 | |
tnsPlotKmInteraction-methods | 1.563 | 0.101 | 1.666 | |
tnsPlotSRE-methods | 1.151 | 0.084 | 1.238 | |
tnsSRD-methods | 1.100 | 0.072 | 1.174 | |
tnsSRE-methods | 1.152 | 0.071 | 1.225 | |
tnsStratification | 0.000 | 0.001 | 0.000 | |