Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:26 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the biosigner package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 186/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
biosigner 1.18.2 (landing page) Philippe Rinaudo
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: biosigner |
Version: 1.18.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:biosigner.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings biosigner_1.18.2.tar.gz |
StartedAt: 2021-05-05 23:43:33 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 23:47:43 -0400 (Wed, 05 May 2021) |
EllapsedTime: 249.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: biosigner.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:biosigner.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings biosigner_1.18.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/biosigner.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘biosigner/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘biosigner’ version ‘1.18.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘biosigner’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MultiDataSet’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed biosign 77.426 1.042 82.343 plot 51.234 0.395 51.688 getMset 44.690 0.453 45.211 biosigner-package 5.429 0.076 5.815 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.12-bioc/meat/biosigner.Rcheck/00check.log’ for details.
biosigner.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL biosigner ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘biosigner’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘biosign’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biosigner)
biosigner.Rcheck/biosigner-Ex.timings
name | user | system | elapsed | |
biosign-class | 3.969 | 0.175 | 4.158 | |
biosign | 77.426 | 1.042 | 82.343 | |
biosignMultiDataSet-class | 0.000 | 0.000 | 0.001 | |
biosigner-package | 5.429 | 0.076 | 5.815 | |
getAccuracyMN | 3.468 | 0.053 | 3.532 | |
getEset | 3.204 | 0.062 | 3.268 | |
getMset | 44.690 | 0.453 | 45.211 | |
getSignatureLs | 3.299 | 0.070 | 3.373 | |
plot | 51.234 | 0.395 | 51.688 | |
predict | 3.911 | 0.050 | 3.969 | |
show | 3.268 | 0.050 | 3.322 | |