Hector Corrada Bravo
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/epivizr |
| Branch: RELEASE_3_12 |
| Last Commit: 5b93e6c |
| Last Changed Date: 2020-10-27 10:53:17 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:03 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the epivizr package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 560/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epivizr 2.20.0 (landing page) Hector Corrada Bravo
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: epivizr |
| Version: 2.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/epivizr_2.20.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL epivizr_2.20.0.zip && rm epivizr_2.20.0.tar.gz epivizr_2.20.0.zip |
| StartedAt: 2021-05-05 18:17:05 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:18:20 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 75.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/epivizr_2.20.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL epivizr_2.20.0.zip && rm epivizr_2.20.0.tar.gz epivizr_2.20.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 932k 100 932k 0 0 30.3M 0 --:--:-- --:--:-- --:--:-- 31.3M
install for i386
* installing *source* package 'epivizr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'epivizr'
finding HTML links ... done
EpivizApp-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/EpivizApp-class.Rd:33: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/EpivizApp-class.Rd:63: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/EpivizApp-class.Rd:64: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/EpivizApp-class.Rd:73: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
EpivizChart-class html
EpivizChartMgr-class html
restartEpiviz html
show-EpivizChart-method html
startEpiviz html
tcga_colon_blocks html
tcga_colon_curves html
tcga_colon_expression html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/tcga_colon_expression.Rd:25: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/tcga_colon_expression.Rd:8: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpu2jOiM/R.INSTALL22cc30b825ab/epivizr/man/tcga_colon_expression.Rd:22: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'epivizr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizr' as epivizr_2.20.0.zip
* DONE (epivizr)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'epivizr' successfully unpacked and MD5 sums checked