Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:05 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the qvalue package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1440/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
qvalue 2.22.0 (landing page) John D. Storey
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: qvalue |
Version: 2.22.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:qvalue.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings qvalue_2.22.0.tar.gz |
StartedAt: 2021-05-06 05:57:16 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 05:58:27 -0400 (Thu, 06 May 2021) |
EllapsedTime: 71.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: qvalue.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:qvalue.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings qvalue_2.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/qvalue.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'qvalue/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'qvalue' version '2.22.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'qvalue' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lfdr: no visible global function definition for 'qnorm' lfdr: no visible global function definition for 'density' lfdr: no visible global function definition for 'smooth.spline' lfdr: no visible global function definition for 'predict' lfdr: no visible global function definition for 'dnorm' pi0est: no visible global function definition for 'smooth.spline' pi0est: no visible global function definition for 'predict' pi0est: no visible global function definition for 'quantile' plot.qvalue: no visible global function definition for 'quantile' write.qvalue: no visible global function definition for 'write.table' Undefined global functions or variables: density dnorm predict qnorm quantile smooth.spline write.table Consider adding importFrom("stats", "density", "dnorm", "predict", "qnorm", "quantile", "smooth.spline") importFrom("utils", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/qvalue.Rcheck/00check.log' for details.
qvalue.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/qvalue_2.22.0.tar.gz && rm -rf qvalue.buildbin-libdir && mkdir qvalue.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qvalue.buildbin-libdir qvalue_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL qvalue_2.22.0.zip && rm qvalue_2.22.0.tar.gz qvalue_2.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 2688k 0 8515 0 0 440k 0 0:00:06 --:--:-- 0:00:06 437k 100 2688k 100 2688k 0 0 41.4M 0 --:--:-- --:--:-- --:--:-- 41.6M install for i386 * installing *source* package 'qvalue' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'qvalue' finding HTML links ... done empPvals html hedenfalk html hist.qvalue html lfdr html pi0est html plot.qvalue html qvalue html summary.qvalue html write.qvalue html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'qvalue' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'qvalue' as qvalue_2.22.0.zip * DONE (qvalue) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'qvalue' successfully unpacked and MD5 sums checked
qvalue.Rcheck/examples_i386/qvalue-Ex.timings
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qvalue.Rcheck/examples_x64/qvalue-Ex.timings
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