Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:26 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the scater package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1629/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scater 1.18.6 (landing page) Alan O'Callaghan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: scater |
Version: 1.18.6 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/scater_1.18.6.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.18.6.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL scater_1.18.6.zip && rm scater_1.18.6.tar.gz scater_1.18.6.zip |
StartedAt: 2021-05-05 18:00:47 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 18:01:46 -0400 (Wed, 05 May 2021) |
EllapsedTime: 58.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/scater_1.18.6.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.18.6.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL scater_1.18.6.zip && rm scater_1.18.6.tar.gz scater_1.18.6.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1067k 100 1067k 0 0 33.4M 0 --:--:-- --:--:-- --:--:-- 34.7M install for i386 * installing *source* package 'scater' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scater' finding HTML links ... done SCESet html accessors html finding level-2 HTML links ... done annotateBMFeatures html batchCorrectedAverages html bootstraps html defunct html getExplanatoryPCs html getVarianceExplained html ggsce html multiplot html nexprs html plotColData html plotDots html plotExplanatoryPCs html plotExplanatoryVariables html plotExpression html plotGroupedHeatmap html plotHeatmap html plotHighestExprs html plotPlatePosition html plotRLE html plotReducedDim html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/plotReducedDim.Rd:34: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic plotRowData html plotScater html plot_reddim html reexports html retrieveCellInfo html retrieveFeatureInfo html runColDataPCA html runDiffusionMap html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runDiffusionMap.Rd:42: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runDiffusionMap.Rd:77: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runDiffusionMap.Rd:78: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runDiffusionMap.Rd:147: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runDiffusionMap.Rd:149: file link 'plotDiffusionMap' in package 'scater' does not exist and so has been treated as a topic runMDS html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runMDS.Rd:143: file link 'plotMDS' in package 'scater' does not exist and so has been treated as a topic runMultiUMAP html runNMF html runPCA html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runPCA.Rd:159: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic runTSNE html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp848N42/R.INSTALL2084241252ed/scater/man/runTSNE.Rd:114: file link 'Rtsne_neighbors' in package 'Rtsne' does not exist and so has been treated as a topic runUMAP html scater-pkg html scater-plot-args html toSingleCellExperiment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scater' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'scater' as scater_1.18.6.zip * DONE (scater) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'scater' successfully unpacked and MD5 sums checked