| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:28 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the AnnotationFuncs package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationFuncs.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 65/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Stefan McKinnon Edwards
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: AnnotationFuncs |
| Version: 1.42.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs |
| StartedAt: 2021-10-14 10:36:08 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:36:28 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 19.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs
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* checking for file ‘AnnotationFuncs/DESCRIPTION’ ... OK
* preparing ‘AnnotationFuncs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AnnotationFuncsUserguide.Rnw’ using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Warning: Package 'AnnotationFuncs' is deprecated and will be removed from
Bioconductor version 3.14
Warning in translate(symbols, from = org.Bt.egSYMBOL2EG, to = org.Hs.egGENENAME) :
TAXID for 'to' and 'from' does not match! We found:
From: Bos taurus
To: Homo sapiens
For cross species (ie. homologes) look at e.g. hom.Hs.inp.db.
Error: processing vignette 'AnnotationFuncsUserguide.Rnw' failed with diagnostics:
chunk 14
Error in library(hom.Hs.inp.db) :
there is no package called ‘hom.Hs.inp.db’
--- failed re-building ‘AnnotationFuncsUserguide.Rnw’
SUMMARY: processing the following file failed:
‘AnnotationFuncsUserguide.Rnw’
Error: Vignette re-building failed.
Execution halted