| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the DAPARdata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 90/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| DAPARdata 1.22.2 (landing page) Samuel Wieczorek
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: DAPARdata |
| Version: 1.22.2 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings DAPARdata_1.22.2.tar.gz |
| StartedAt: 2021-10-16 13:03:00 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:05:20 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 140.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DAPARdata.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings DAPARdata_1.22.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAPARdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPARdata’ version ‘1.22.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPARdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 55.5Mb
sub-directories of 1Mb or more:
data 13.0Mb
extdata 41.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Exp1_R25_pept.RData 2.8Mb 1.6Mb xz
Exp1_R25_prot.RData 1.2Mb 637Kb xz
Exp1_R2_pept.RData 2.4Mb 1.3Mb xz
Exp1_R2_prot.RData 1.2Mb 656Kb xz
Exp2_R100_pept.RData 1.2Mb 723Kb xz
Exp2_R100_prot.RData 586Kb 282Kb xz
Exp2_R10_pept.RData 1.2Mb 704Kb xz
Exp2_R10_prot.RData 592Kb 286Kb xz
Exp2_R2_pept.RData 1.1Mb 651Kb xz
Exp2_R2_prot.RData 591Kb 278Kb xz
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck/00check.log’
for details.
DAPARdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL DAPARdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘DAPARdata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DAPARdata)
DAPARdata.Rcheck/DAPARdata-Ex.timings
| name | user | system | elapsed | |
| DAPARdata | 0.012 | 0.003 | 0.079 | |