Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the mcsurvdata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 222/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
mcsurvdata 1.10.0 (landing page) Adria Caballe Mestres
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: mcsurvdata |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:mcsurvdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings mcsurvdata_1.10.0.tar.gz |
StartedAt: 2021-10-16 13:30:04 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:31:20 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 76.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mcsurvdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:mcsurvdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings mcsurvdata_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/mcsurvdata.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mcsurvdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mcsurvdata’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mcsurvdata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mcsurvdata 16.454 0.571 18.741 nda.crc 8.638 0.117 9.508 nda.brca 8.047 0.140 8.804 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/mcsurvdata.Rcheck/00check.log’ for details.
mcsurvdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL mcsurvdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘mcsurvdata’ ... ** using staged installation ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcsurvdata)
mcsurvdata.Rcheck/mcsurvdata-Ex.timings
name | user | system | elapsed | |
mcsurvdata | 16.454 | 0.571 | 18.741 | |
nda.brca | 8.047 | 0.140 | 8.804 | |
nda.crc | 8.638 | 0.117 | 9.508 | |