| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:58 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the simplifyEnrichment package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/simplifyEnrichment.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1803/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| simplifyEnrichment 1.4.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: simplifyEnrichment |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:simplifyEnrichment.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings simplifyEnrichment_1.4.0.tar.gz |
| StartedAt: 2022-04-12 09:24:14 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 09:26:43 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 149.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: simplifyEnrichment.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:simplifyEnrichment.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings simplifyEnrichment_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/simplifyEnrichment.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simplifyEnrichment/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘simplifyEnrichment’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simplifyEnrichment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ht_clusters 8.28 0.243 8.482
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
simplifyEnrichment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL simplifyEnrichment ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘simplifyEnrichment’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simplifyEnrichment)
simplifyEnrichment.Rcheck/tests/test-all.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(simplifyEnrichment)))
>
> test_check("simplifyEnrichment")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
>
> proc.time()
user system elapsed
9.769 0.751 10.493
simplifyEnrichment.Rcheck/simplifyEnrichment-Ex.timings
| name | user | system | elapsed | |
| DO_similarity | 0 | 0 | 0 | |
| GO_similarity | 0 | 0 | 0 | |
| all_clustering_methods | 0 | 0 | 0 | |
| anno_word_cloud | 1.765 | 0.064 | 1.830 | |
| anno_word_cloud_from_GO | 0 | 0 | 0 | |
| binary_cut | 1.371 | 0.068 | 1.439 | |
| cluster_by_MCL | 0.001 | 0.000 | 0.000 | |
| cluster_by_apcluster | 0 | 0 | 0 | |
| cluster_by_dynamicTreeCut | 0 | 0 | 0 | |
| cluster_by_hdbscan | 0 | 0 | 0 | |
| cluster_by_igraph | 0 | 0 | 0 | |
| cluster_by_kmeans | 0.000 | 0.000 | 0.001 | |
| cluster_by_mclust | 0 | 0 | 0 | |
| cluster_terms | 0.001 | 0.000 | 0.000 | |
| cmp_make_clusters | 0 | 0 | 0 | |
| cmp_make_plot | 0 | 0 | 0 | |
| compare_clustering_methods | 0 | 0 | 0 | |
| count_word | 0.124 | 0.008 | 0.131 | |
| count_word_from_GO | 0.111 | 0.004 | 0.115 | |
| dend_node_apply | 0.005 | 0.000 | 0.005 | |
| difference_score | 1.544 | 0.012 | 1.556 | |
| edit_node | 0 | 0 | 0 | |
| export_to_shiny_app | 1.534 | 0.024 | 1.557 | |
| guess_ont | 0 | 0 | 0 | |
| heightDetails.word_cloud | 0.000 | 0.000 | 0.001 | |
| ht_clusters | 8.280 | 0.243 | 8.482 | |
| partition_by_hclust | 0 | 0 | 0 | |
| partition_by_kmeans | 0 | 0 | 0 | |
| partition_by_kmeanspp | 0 | 0 | 0 | |
| partition_by_pam | 0 | 0 | 0 | |
| plot_binary_cut | 0 | 0 | 0 | |
| random_DO | 0 | 0 | 0 | |
| random_GO | 0 | 0 | 0 | |
| register_clustering_methods | 0.000 | 0.000 | 0.001 | |
| remove_clustering_methods | 0 | 0 | 0 | |
| reset_clustering_methods | 0.001 | 0.000 | 0.001 | |
| scale_fontsize | 0 | 0 | 0 | |
| select_cutoff | 0 | 0 | 0 | |
| simplifyEnrichment | 0 | 0 | 0 | |
| simplifyGO | 0 | 0 | 0 | |
| simplifyGOFromMultipleLists | 0 | 0 | 0 | |
| subset_enrichResult | 0 | 0 | 0 | |
| term_similarity | 0 | 0 | 0 | |
| term_similarity_from_KEGG | 0 | 0 | 0 | |
| term_similarity_from_MSigDB | 0.000 | 0.000 | 0.001 | |
| term_similarity_from_Reactome | 0 | 0 | 0 | |
| term_similarity_from_enrichResult | 0 | 0 | 0 | |
| term_similarity_from_gmt | 0 | 0 | 0 | |
| widthDetails.word_cloud | 0 | 0 | 0 | |
| word_cloud_grob | 0.093 | 0.000 | 0.094 | |