| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:32 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the variancePartition package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2037/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| variancePartition 1.24.1 (landing page) Gabriel E. Hoffman
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: variancePartition |
| Version: 1.24.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/variancePartition_1.24.1.tar.gz && rm -rf variancePartition.buildbin-libdir && mkdir variancePartition.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=variancePartition.buildbin-libdir variancePartition_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL variancePartition_1.24.1.zip && rm variancePartition_1.24.1.tar.gz variancePartition_1.24.1.zip |
| StartedAt: 2022-04-12 06:38:43 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:41:02 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 139.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/variancePartition_1.24.1.tar.gz && rm -rf variancePartition.buildbin-libdir && mkdir variancePartition.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=variancePartition.buildbin-libdir variancePartition_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL variancePartition_1.24.1.zip && rm variancePartition_1.24.1.tar.gz variancePartition_1.24.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 7695k 1 152k 0 0 402k 0 0:00:19 --:--:-- 0:00:19 401k
15 7695k 15 1192k 0 0 862k 0 0:00:08 0:00:01 0:00:07 862k
41 7695k 41 3162k 0 0 1326k 0 0:00:05 0:00:02 0:00:03 1327k
71 7695k 71 5464k 0 0 1616k 0 0:00:04 0:00:03 0:00:01 1616k
98 7695k 98 7602k 0 0 1745k 0 0:00:04 0:00:04 --:--:-- 1744k
100 7695k 100 7695k 0 0 1752k 0 0:00:04 0:00:04 --:--:-- 1880k
install for i386
* installing *source* package 'variancePartition' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'calcVarPart' with signature '"negbin"': no definition for class "negbin"
in method for 'checkModelStatus' with signature '"negbin"': no definition for class "negbin"
Creating a new generic function for 'classifyTestsF' in package 'variancePartition'
** help
Loading required namespace: variancePartition
*** installing help indices
converting help for package 'variancePartition'
finding HTML links ... done
ESS-method html
FMT-class html
FMT html
FMT.ZI html
MArrayLM2-class html
VarParCIList-class html
VarParFitList-class html
applyQualityWeights html
as.data.frame.varPartResults html
as.matrix-varPartResults-method html
calcVarPart-method html
canCorPairs html
classifyTestsF-MArrayLM2-method html
classifyTestsF html
colinearityScore html
dot-getAllUniContrasts html
dot-isMixedModelFormula html
dot-standard_transform html
dream-method html
dscchisq html
eBayes-method html
eBayesFMT html
extractVarPart html
fitExtractVarPartModel-method html
fitVarPartModel-method html
getContrast-method html
getTreat-method html
get_prediction-method html
ggColorHue html
isRunableFormula html
makeContrastsDream html
plotCompareP-method html
plotContrasts html
plotCorrMatrix html
plotCorrStructure html
plotPercentBars-method html
plotStratify html
plotStratifyBy html
plotVarPart-method html
plotVarianceEstimates html
rdf.merMod html
rdf_from_matrices html
reOnly html
residuals-MArrayLM-method html
residuals-MArrayLM2-method html
residuals-VarParFitList-method html
residuals.MArrayLM2 html
shrinkageMetric html
sortCols-method html
subset.MArrayLM2-method html
toptable-method html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/variancePartition.buildbin-libdir/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CFMT-method.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/variancePartition.buildbin-libdir/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CMArrayLM2-method.html
varParFrac-class html
varPartConfInf html
varPartDEdata html
varPartData html
varPartResults-class html
voomWithDreamWeights html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'variancePartition' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'variancePartition' as variancePartition_1.24.1.zip
* DONE (variancePartition)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'variancePartition' successfully unpacked and MD5 sums checked