Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:38 -0400 (Thu, 02 Nov 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 621/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
EBSeqHMM 1.36.0 (landing page) Ning Leng
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.6.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the EBSeqHMM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeqHMM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: EBSeqHMM |
Version: 1.36.0 |
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data EBSeqHMM |
StartedAt: 2023-11-02 00:34:44 -0000 (Thu, 02 Nov 2023) |
EndedAt: 2023-11-02 00:35:02 -0000 (Thu, 02 Nov 2023) |
EllapsedTime: 18.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data EBSeqHMM ### ############################################################################## ############################################################################## * checking for file ‘EBSeqHMM/DESCRIPTION’ ... OK * preparing ‘EBSeqHMM’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EBSeqHMM_vignette.Rnw’ using Sweave Loading required package: blockmodeling To cite package 'blockmodeling' in publications please use package citation and (at least) one of the articles: Žiberna, Aleš (2007). Generalized blockmodeling of valued networks. Social Networks 29(1), 105-126. Žiberna, Aleš (2008). Direct and indirect approaches to blockmodeling of valued networks in terms of regular equivalence. Journal of Mathematical Sociology 32(1), 57–84. Žiberna, Aleš (2014). Blockmodeling of multilevel networks. Social Networks 39, 46–61. https://doi.org/10.1016/j.socnet.2014.04.002. Žiberna, Aleš (2023). Generalized and Classical Blockmodeling of Valued Networks, R package version 1.1.5. Cugmas, Marjan (2023). Generalized and Classical Blockmodeling of Valued Networks, R package version 1.1.5. To see these entries in BibTeX format, use 'format(<citation>, bibtex=TRUE)', or 'toBibtex(.)'. Loading required package: gplots Attaching package: ‘gplots’ The following object is masked from ‘package:stats’: lowess Loading required package: testthat Attaching package: ‘EBSeqHMM’ The following objects are masked from ‘package:EBSeq’: beta.mom, f0 Warning in max(as.numeric(Iso)) : no non-missing arguments to max; returning -Inf Error: processing vignette 'EBSeqHMM_vignette.Rnw' failed with diagnostics: chunk 28 Error in 1:I : result would be too long a vector --- failed re-building ‘EBSeqHMM_vignette.Rnw’ SUMMARY: processing the following file failed: ‘EBSeqHMM_vignette.Rnw’ Error: Vignette re-building failed. Execution halted