Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-04-17 11:36:19 -0400 (Wed, 17 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1770/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RNAdecay 1.22.2 (landing page) Reed Sorenson
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the RNAdecay package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RNAdecay |
Version: 1.22.2 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL RNAdecay |
StartedAt: 2024-04-15 15:33:33 -0400 (Mon, 15 Apr 2024) |
EndedAt: 2024-04-15 15:41:07 -0400 (Mon, 15 Apr 2024) |
EllapsedTime: 453.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL RNAdecay ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘RNAdecay’ ... ** using staged installation ** libs /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_1sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_1sse.cpp -o general_dExp_1sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_dExp_1sse.so general_dExp_1sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_1sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_1sse.cpp -o general_Exp_1sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_Exp_1sse.so general_Exp_1sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_2sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_2sse.cpp -o general_dExp_2sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_dExp_2sse.so general_dExp_2sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_2sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_2sse.cpp -o general_Exp_2sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_Exp_2sse.so general_Exp_2sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_3sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_3sse.cpp -o general_dExp_3sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_dExp_3sse.so general_dExp_3sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_3sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_3sse.cpp -o general_Exp_3sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_Exp_3sse.so general_Exp_3sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_4sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_4sse.cpp -o general_dExp_4sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_dExp_4sse.so general_dExp_4sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)" using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_4sse -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_4sse.cpp -o general_Exp_4sse.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o general_Exp_4sse.so general_Exp_4sse.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src' [1] 0 installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-RNAdecay/00new/RNAdecay/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNAdecay)