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This page was generated on 2024-10-18 20:41 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2158/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| tidySpatialExperiment 1.0.0 (landing page) William Hutchison
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the tidySpatialExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidySpatialExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: tidySpatialExperiment |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidySpatialExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidySpatialExperiment_1.0.0.tar.gz |
| StartedAt: 2024-10-17 14:21:51 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 14:33:05 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 674.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: tidySpatialExperiment.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidySpatialExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidySpatialExperiment_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/tidySpatialExperiment.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tidySpatialExperiment/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidySpatialExperiment’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidySpatialExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘S4Vectors:::disableValidity’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
select_helper: no visible global function definition for ‘all_of’
join_features,SpatialExperiment: no visible binding for global variable
‘index’
Undefined global functions or variables:
all_of index
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
aggregate_cells 10.404 0.423 13.078
right_join 6.317 0.105 7.577
left_join 5.418 0.083 6.551
sample_n 5.413 0.083 6.512
rename 5.352 0.091 7.071
unnest 5.345 0.074 6.247
count 5.239 0.067 6.140
inner_join 5.238 0.056 5.968
filter 5.185 0.062 5.997
bind_cols 5.151 0.064 5.897
bind_rows 5.156 0.059 5.885
ggplot 5.127 0.064 5.900
plot_ly 5.021 0.152 6.123
join_features 5.069 0.076 5.774
rectangle 5.039 0.083 6.179
arrange 5.048 0.064 5.757
nest 5.032 0.073 6.132
ellipse 5.042 0.058 5.852
extract 5.034 0.057 6.202
unite 4.962 0.082 5.872
separate 4.955 0.068 5.854
mutate 4.937 0.069 6.002
slice 4.918 0.071 5.802
pull 4.866 0.082 6.083
formatting 4.878 0.053 5.675
pivot_longer 4.831 0.073 5.853
rowwise 4.830 0.071 5.829
as_tibble 4.824 0.053 5.500
group_by 4.809 0.056 5.469
distinct 4.789 0.057 5.565
summarise 4.730 0.068 5.649
glimpse 4.705 0.060 5.415
select 4.669 0.062 5.582
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/tidySpatialExperiment.Rcheck/00check.log’
for details.
tidySpatialExperiment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL tidySpatialExperiment ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘tidySpatialExperiment’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidySpatialExperiment)
tidySpatialExperiment.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(tidySpatialExperiment)
Loading required package: SpatialExperiment
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
Loading required package: tidySingleCellExperiment
Attaching package: 'tidySpatialExperiment'
The following object is masked from 'package:tidySingleCellExperiment':
unnest_single_cell_experiment
>
> test_check("tidySpatialExperiment")
rd10xV> dir <- system.file(
rd10xV+ file.path("extdata", "10xVisium"),
rd10xV+ package = "SpatialExperiment")
rd10xV> sample_ids <- c("section1", "section2")
rd10xV> samples <- file.path(dir, sample_ids, "outs")
rd10xV> list.files(samples[1])
[1] "raw_feature_bc_matrix" "spatial"
rd10xV> list.files(file.path(samples[1], "spatial"))
[1] "scalefactors_json.json" "tissue_lowres_image.png"
[3] "tissue_positions_list.csv"
rd10xV> file.path(samples[1], "raw_feature_bc_matrix")
[1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix"
rd10xV> (spe <- read10xVisium(samples, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # base directory 'outs/' from Space Ranger can also be omitted
rd10xV> samples2 <- file.path(dir, sample_ids)
rd10xV> (spe2 <- read10xVisium(samples2, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # tabulate number of spots mapped to tissue
rd10xV> cd <- colData(spe)
rd10xV> table(
rd10xV+ in_tissue = cd$in_tissue,
rd10xV+ sample_id = cd$sample_id)
sample_id
in_tissue section1 section2
FALSE 28 27
TRUE 22 22
rd10xV> # view available images
rd10xV> imgData(spe)
DataFrame with 2 rows and 4 columns
sample_id image_id data scaleFactor
<character> <character> <list> <numeric>
1 section1 lowres #### 0.0510334
2 section2 lowres #### 0.0510334
rd10xV> dir <- system.file(
rd10xV+ file.path("extdata", "10xVisium"),
rd10xV+ package = "SpatialExperiment")
rd10xV> sample_ids <- c("section1", "section2")
rd10xV> samples <- file.path(dir, sample_ids, "outs")
rd10xV> list.files(samples[1])
[1] "raw_feature_bc_matrix" "spatial"
rd10xV> list.files(file.path(samples[1], "spatial"))
[1] "scalefactors_json.json" "tissue_lowres_image.png"
[3] "tissue_positions_list.csv"
rd10xV> file.path(samples[1], "raw_feature_bc_matrix")
[1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix"
rd10xV> (spe <- read10xVisium(samples, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # base directory 'outs/' from Space Ranger can also be omitted
rd10xV> samples2 <- file.path(dir, sample_ids)
rd10xV> (spe2 <- read10xVisium(samples2, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # tabulate number of spots mapped to tissue
rd10xV> cd <- colData(spe)
rd10xV> table(
rd10xV+ in_tissue = cd$in_tissue,
rd10xV+ sample_id = cd$sample_id)
sample_id
in_tissue section1 section2
FALSE 28 27
TRUE 22 22
rd10xV> # view available images
rd10xV> imgData(spe)
DataFrame with 2 rows and 4 columns
sample_id image_id data scaleFactor
<character> <character> <list> <numeric>
1 section1 lowres #### 0.0510334
2 section2 lowres #### 0.0510334
rd10xV> dir <- system.file(
rd10xV+ file.path("extdata", "10xVisium"),
rd10xV+ package = "SpatialExperiment")
rd10xV> sample_ids <- c("section1", "section2")
rd10xV> samples <- file.path(dir, sample_ids, "outs")
rd10xV> list.files(samples[1])
[1] "raw_feature_bc_matrix" "spatial"
rd10xV> list.files(file.path(samples[1], "spatial"))
[1] "scalefactors_json.json" "tissue_lowres_image.png"
[3] "tissue_positions_list.csv"
rd10xV> file.path(samples[1], "raw_feature_bc_matrix")
[1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix"
rd10xV> (spe <- read10xVisium(samples, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # base directory 'outs/' from Space Ranger can also be omitted
rd10xV> samples2 <- file.path(dir, sample_ids)
rd10xV> (spe2 <- read10xVisium(samples2, sample_ids,
rd10xV+ type = "sparse", data = "raw",
rd10xV+ images = "lowres", load = FALSE))
# A SpatialExperiment-tibble abstraction: 99 × 7
# [90mFeatures=50 | Cells=99 | Assays=counts[0m
.cell in_tissue array_row array_col sample_id pxl_col_in_fullres
<chr> <lgl> <int> <int> <chr> <int>
1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312
2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230
3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170
4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519
5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679
6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831
7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106
8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170
9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212
10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886
# ℹ 89 more rows
# ℹ 1 more variable: pxl_row_in_fullres <int>
rd10xV> # tabulate number of spots mapped to tissue
rd10xV> cd <- colData(spe)
rd10xV> table(
rd10xV+ in_tissue = cd$in_tissue,
rd10xV+ sample_id = cd$sample_id)
sample_id
in_tissue section1 section2
FALSE 28 27
TRUE 22 22
rd10xV> # view available images
rd10xV> imgData(spe)
DataFrame with 2 rows and 4 columns
sample_id image_id data scaleFactor
<character> <character> <list> <numeric>
1 section1 lowres #### 0.0510334
2 section2 lowres #### 0.0510334
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 38 ]
>
> proc.time()
user system elapsed
48.308 1.996 59.523
tidySpatialExperiment.Rcheck/tidySpatialExperiment-Ex.timings
| name | user | system | elapsed | |
| aggregate_cells | 10.404 | 0.423 | 13.078 | |
| arrange | 5.048 | 0.064 | 5.757 | |
| as_tibble | 4.824 | 0.053 | 5.500 | |
| bind_cols | 5.151 | 0.064 | 5.897 | |
| bind_rows | 5.156 | 0.059 | 5.885 | |
| count | 5.239 | 0.067 | 6.140 | |
| distinct | 4.789 | 0.057 | 5.565 | |
| ellipse | 5.042 | 0.058 | 5.852 | |
| extract | 5.034 | 0.057 | 6.202 | |
| filter | 5.185 | 0.062 | 5.997 | |
| formatting | 4.878 | 0.053 | 5.675 | |
| ggplot | 5.127 | 0.064 | 5.900 | |
| glimpse | 4.705 | 0.060 | 5.415 | |
| group_by | 4.809 | 0.056 | 5.469 | |
| inner_join | 5.238 | 0.056 | 5.968 | |
| join_features | 5.069 | 0.076 | 5.774 | |
| left_join | 5.418 | 0.083 | 6.551 | |
| mutate | 4.937 | 0.069 | 6.002 | |
| nest | 5.032 | 0.073 | 6.132 | |
| pivot_longer | 4.831 | 0.073 | 5.853 | |
| plot_ly | 5.021 | 0.152 | 6.123 | |
| pull | 4.866 | 0.082 | 6.083 | |
| rectangle | 5.039 | 0.083 | 6.179 | |
| rename | 5.352 | 0.091 | 7.071 | |
| right_join | 6.317 | 0.105 | 7.577 | |
| rowwise | 4.830 | 0.071 | 5.829 | |
| sample_n | 5.413 | 0.083 | 6.512 | |
| select | 4.669 | 0.062 | 5.582 | |
| separate | 4.955 | 0.068 | 5.854 | |
| slice | 4.918 | 0.071 | 5.802 | |
| summarise | 4.730 | 0.068 | 5.649 | |
| tbl_format_header | 0.000 | 0.000 | 0.001 | |
| unite | 4.962 | 0.082 | 5.872 | |
| unnest | 5.345 | 0.074 | 6.247 | |