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This page was generated on 2024-11-05 12:08 -0500 (Tue, 05 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 110/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ATACCoGAPS 1.8.0  (landing page)
Rossin Erbe
Snapshot Date: 2024-11-04 13:40 -0500 (Mon, 04 Nov 2024)
git_url: https://git.bioconductor.org/packages/ATACCoGAPS
git_branch: RELEASE_3_20
git_last_commit: 6c10192
git_last_commit_date: 2024-10-29 11:12:48 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for ATACCoGAPS on kunpeng2

To the developers/maintainers of the ATACCoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ATACCoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: ATACCoGAPS
Version: 1.8.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ATACCoGAPS
StartedAt: 2024-11-04 22:52:11 -0000 (Mon, 04 Nov 2024)
EndedAt: 2024-11-04 22:53:44 -0000 (Mon, 04 Nov 2024)
EllapsedTime: 93.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ATACCoGAPS
###
##############################################################################
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* checking for file ‘ATACCoGAPS/DESCRIPTION’ ... OK
* preparing ‘ATACCoGAPS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ATACCoGAPS.Rmd’ using rmarkdown

Quitting from lines 90-94 [unnamed-chunk-10] (ATACCoGAPS.Rmd)
Error: processing vignette 'ATACCoGAPS.Rmd' failed with diagnostics:
non-numeric matrix extent
--- failed re-building ‘ATACCoGAPS.Rmd’

SUMMARY: processing the following file failed:
  ‘ATACCoGAPS.Rmd’

Error: Vignette re-building failed.
Execution halted