Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-10-03 11:41 -0400 (Thu, 03 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4716 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4446 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4445 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 381/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ClustIRR 1.3.23 (landing page) Simo Kitanovski
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the ClustIRR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ClustIRR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ClustIRR |
Version: 1.3.23 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ClustIRR |
StartedAt: 2024-10-02 16:32:02 -0400 (Wed, 02 Oct 2024) |
EndedAt: 2024-10-02 16:34:28 -0400 (Wed, 02 Oct 2024) |
EllapsedTime: 146.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ClustIRR ### ############################################################################## ############################################################################## * checking for file ‘ClustIRR/DESCRIPTION’ ... OK * preparing ‘ClustIRR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘User_manual.Rmd’ using rmarkdown Analyze database: 100.0% (1000.0) Index database: 100.0% (1000.0) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Read queries: 100.0% (20 kB) Search database: 4.0% (40.0) Search database: 48.8% (488.0) Search database: 100.0% (1000.0) Write hits: 100.0% (3286.0) Quitting from lines 706-713 [unnamed-chunk-34] (User_manual.Rmd) Error: processing vignette 'User_manual.Rmd' failed with diagnostics: 'substitutionMatrix' must be a numeric matrix --- failed re-building ‘User_manual.Rmd’ SUMMARY: processing the following file failed: ‘User_manual.Rmd’ Error: Vignette re-building failed. Execution halted