Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-05 12:07 -0500 (Tue, 05 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4503 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 805/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GeneSelectMMD 2.50.0 (landing page) Weiliang Qiu
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the GeneSelectMMD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GeneSelectMMD |
Version: 2.50.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD |
StartedAt: 2024-11-04 15:58:32 -0500 (Mon, 04 Nov 2024) |
EndedAt: 2024-11-04 15:59:07 -0500 (Mon, 04 Nov 2024) |
EllapsedTime: 35.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c Qfunc.f -o Qfunc.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c blas.f -o blas.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c isnan.c -o isnan.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lbfgsb.f -o lbfgsb.o lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1409:28: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ note: ‘tl’ was declared here /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lbfgsbDriver.f -o lbfgsbDriver.o lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c linpack.f -o linpack.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c llkhFun.f -o llkhFun.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c myTtest.f -o myTtest.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c paraEstLoop.f -o paraEstLoop.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pt.c -o pt.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c timer.f -o timer.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c wiFun.f -o wiFun.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for _lbfgsbdriver_: stack subq instruction is too different from dwarf stack size installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)