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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 964/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HTqPCR 1.59.0  (landing page)
Heidi Dvinge
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/HTqPCR
git_branch: devel
git_last_commit: 5d072c9
git_last_commit_date: 2024-04-30 10:20:52 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino6Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped


BUILD results for HTqPCR on palomino6

To the developers/maintainers of the HTqPCR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HTqPCR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HTqPCR
Version: 1.59.0
Command: chmod a+r HTqPCR -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HTqPCR
StartedAt: 2024-07-15 18:38:11 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 18:38:32 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 20.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r HTqPCR -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HTqPCR
###
##############################################################################
##############################################################################


* checking for file 'HTqPCR/DESCRIPTION' ... OK
* preparing 'HTqPCR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HTqPCR.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    aperm, append, as.data.frame, basename, cbind,
    colnames, dirname, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply,
    setdiff, table, tapply, union, unique, unsplit,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 6 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 6 is not drawn
Warning in rbind(deparse.level, ...) :
  number of columns of result, 1, is not a multiple of vector length 2 of arg 2

Error: processing vignette 'HTqPCR.Rnw' failed with diagnostics:
 chunk 68 (label = Check HTqPCR news) 
Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)

--- failed re-building 'HTqPCR.Rnw'

SUMMARY: processing the following file failed:
  'HTqPCR.Rnw'

Error: Vignette re-building failed.
Execution halted