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This page was generated on 2024-08-27 11:47 -0400 (Tue, 27 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4421
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4415
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1120/2255HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MACSr 1.13.0  (landing page)
Qiang Hu
Snapshot Date: 2024-08-26 14:00 -0400 (Mon, 26 Aug 2024)
git_url: https://git.bioconductor.org/packages/MACSr
git_branch: devel
git_last_commit: d2e5752
git_last_commit_date: 2024-04-30 11:31:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for MACSr on kunpeng2

To the developers/maintainers of the MACSr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACSr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MACSr
Version: 1.13.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MACSr
StartedAt: 2024-08-26 23:09:44 -0000 (Mon, 26 Aug 2024)
EndedAt: 2024-08-26 23:10:28 -0000 (Mon, 26 Aug 2024)
EllapsedTime: 44.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MACSr
###
##############################################################################
##############################################################################


* checking for file ‘MACSr/DESCRIPTION’ ... OK
* preparing ‘MACSr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MACSr.Rmd’ using rmarkdown

A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.1 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last):  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/.cache/R/basilisk/1.17.2/MACSr/1.13.0/env_macs/lib/python3.10/site-packages/MACS3/Commands/callpeak_cmd.py", line 23, in <module>
    from MACS3.Utilities.OptValidator import opt_validate_callpeak
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/.cache/R/basilisk/1.17.2/MACSr/1.13.0/env_macs/lib/python3.10/site-packages/MACS3/Utilities/OptValidator.py", line 24, in <module>
    from MACS3.IO.Parser import BEDParser, ELANDResultParser, ELANDMultiParser, \
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/home/biocbuild/R/R-4.4.1/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)

Quitting from lines 88-94 [unnamed-chunk-3] (MACSr.Rmd)
Error: processing vignette 'MACSr.Rmd' failed with diagnostics:
ImportError: numpy.core.multiarray failed to import (auto-generated because you didn't call 'numpy.import_array()' after cimporting numpy; use '<void>numpy._import_array' to disable if you are certain you don't need it).
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘MACSr.Rmd’

SUMMARY: processing the following file failed:
  ‘MACSr.Rmd’

Error: Vignette re-building failed.
Execution halted