Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-27 11:45 -0400 (Tue, 27 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4415 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1773/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RProtoBufLib 2.17.0 (landing page) Mike Jiang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the RProtoBufLib package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RProtoBufLib.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RProtoBufLib |
Version: 2.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RProtoBufLib.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RProtoBufLib_2.17.0.tar.gz |
StartedAt: 2024-08-26 23:54:55 -0400 (Mon, 26 Aug 2024) |
EndedAt: 2024-08-26 23:55:05 -0400 (Mon, 26 Aug 2024) |
EllapsedTime: 9.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RProtoBufLib.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RProtoBufLib.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RProtoBufLib_2.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RProtoBufLib/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RProtoBufLib’ version ‘2.17.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RProtoBufLib’ can be installed ... WARNING Found the following significant warnings: ./google/protobuf/util/internal/default_value_objectwriter.h:122:37: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:98:29: warning: 'StartObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:99:29: warning: 'EndObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:100:29: warning: 'StartList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:101:29: warning: 'EndList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:102:29: warning: 'RenderBool' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:103:29: warning: 'RenderInt32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:104:29: warning: 'RenderUint32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:105:29: warning: 'RenderInt64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:106:29: warning: 'RenderUint64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:107:29: warning: 'RenderDouble' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:108:29: warning: 'RenderFloat' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:109:29: warning: 'RenderString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:111:29: warning: 'RenderBytes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] ./google/protobuf/util/internal/json_objectwriter.h:112:29: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] google/protobuf/compiler/cpp/cpp_helpers.cc:171:6: warning: function 'Base63Char' is not needed and will not be emitted [-Wunneeded-internal-declaration] See ‘/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib.Rcheck/00install.out’ for details. * used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ * used SDK: ‘MacOSX11.3.sdk’ * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking installed package size ... NOTE installed size is 12.1Mb sub-directories of 1Mb or more: include 2.8Mb lib 9.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': BSD_3_clause * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... WARNING ---- unloading Warning message: .onUnload failed in unloadNamespace() for 'RProtoBufLib', details: call: dll[["path"]] error: subscript out of bounds * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 5 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib.Rcheck/00check.log’ for details.
RProtoBufLib.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RProtoBufLib ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘RProtoBufLib’ ... ** using staged installation checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... yes untarring protobuf ... building protobuf... checking whether to enable maintainer-specific portions of Makefiles... yes checking build system type... arm-apple-darwin22.6.0 checking host system type... arm-apple-darwin22.6.0 checking target system type... arm-apple-darwin22.6.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '506' is supported by ustar format... yes checking whether GID '20' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking whether clang -arch arm64 understands -c and -o together... rm: conftest.dSYM: is a directory yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang -arch arm64... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... yes checking dependency style of clang++ -arch arm64 -std=gnu++17... gcc3 checking how to run the C preprocessor... clang -arch arm64 -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++17 -E checking for g++... g++ checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for ar... ar checking the archiver (ar) interface... ar checking for gcc... gcc checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes checking dependency style of gcc... gcc3 checking C++ compiler flags...... use user-supplied: -falign-functions=64 -Wall -g -O2 checking whether __SUNPRO_CC is declared... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by clang -arch arm64... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 786432 checking how to convert arm-apple-darwin22.6.0 file names to arm-apple-darwin22.6.0 format... func_convert_file_noop checking how to convert arm-apple-darwin22.6.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang -arch arm64 object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... ld: warning: -single_module is obsolete no checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang -arch arm64 supports -fno-rtti -fno-exceptions... yes checking for clang -arch arm64 option to produce PIC... -fno-common -DPIC checking if clang -arch arm64 PIC flag -fno-common -DPIC works... yes checking if clang -arch arm64 static flag -static works... no checking if clang -arch arm64 supports -c -o file.o... yes checking if clang -arch arm64 supports -c -o file.o... (cached) yes checking whether the clang -arch arm64 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin22.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++17 -E checking for ld used by clang++ -arch arm64 -std=gnu++17... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the clang++ -arch arm64 -std=gnu++17 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for clang++ -arch arm64 -std=gnu++17 option to produce PIC... -fno-common -DPIC checking if clang++ -arch arm64 -std=gnu++17 PIC flag -fno-common -DPIC works... yes checking if clang++ -arch arm64 -std=gnu++17 static flag -static works... no checking if clang++ -arch arm64 -std=gnu++17 supports -c -o file.o... yes checking if clang++ -arch arm64 -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the clang++ -arch arm64 -std=gnu++17 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin22.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether the linker supports version scripts... no checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for working memcmp... yes checking for working strtod... yes checking for ftruncate... yes checking for memset... yes checking for mkdir... yes checking for strchr... yes checking for strerror... yes checking for strtol... yes checking zlib version... ok (1.2.0.4 or later) checking for library containing zlibVersion... -lz checking whether clang++ -arch arm64 -std=gnu++17 supports C++11 features by default... yes checking whether -latomic is needed... no checking whether clang -arch arm64 is Clang... yes checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking the location of hash_map... <unordered_map> checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating benchmarks/Makefile config.status: creating conformance/Makefile config.status: creating protobuf.pc config.status: creating protobuf-lite.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in third_party/googletest (/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/protobuf-3.8.0/third_party/googletest) configure: WARNING: no configuration information is in third_party/googletest Making install in . make[2]: Nothing to be done for `install-exec-am'. ./install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig' /usr/bin/install -c -m 644 protobuf.pc protobuf-lite.pc '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig' Making install in src depbase=`echo google/protobuf/compiler/main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/compiler/main.o -MD -MP -MF $depbase.Tpo -c -o google/protobuf/compiler/main.o google/protobuf/compiler/main.cc &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo google/protobuf/stubs/bytestream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/bytestream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/bytestream.lo google/protobuf/stubs/bytestream.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/bytestream.lo -MD -MP -MF google/protobuf/stubs/.deps/bytestream.Tpo -c google/protobuf/stubs/bytestream.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/bytestream.o depbase=`echo google/protobuf/stubs/common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/common.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/common.lo google/protobuf/stubs/common.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/common.lo -MD -MP -MF google/protobuf/stubs/.deps/common.Tpo -c google/protobuf/stubs/common.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/common.o depbase=`echo google/protobuf/stubs/int128.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/int128.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/int128.lo google/protobuf/stubs/int128.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/int128.lo -MD -MP -MF google/protobuf/stubs/.deps/int128.Tpo -c google/protobuf/stubs/int128.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/int128.o depbase=`echo google/protobuf/io/io_win32.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/io/io_win32.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/io_win32.lo google/protobuf/io/io_win32.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/io/io_win32.lo -MD -MP -MF google/protobuf/io/.deps/io_win32.Tpo -c google/protobuf/io/io_win32.cc -fno-common -DPIC -o google/protobuf/io/.libs/io_win32.o depbase=`echo google/protobuf/stubs/status.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/status.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/status.lo google/protobuf/stubs/status.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/stubs/status.lo -MD -MP -MF google/protobuf/stubs/.deps/status.Tpo -c google/protobuf/stubs/status.cc -fno-common -DPIC -o 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google/protobuf/util/internal/json_escaping.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/json_escaping.o depbase=`echo google/protobuf/util/internal/json_objectwriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/json_objectwriter.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/json_objectwriter.lo google/protobuf/util/internal/json_objectwriter.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/json_objectwriter.lo -MD -MP -MF google/protobuf/util/internal/.deps/json_objectwriter.Tpo -c google/protobuf/util/internal/json_objectwriter.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/json_objectwriter.o In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:98:29: warning: 'StartObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* StartObject(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:65:25: note: overridden virtual function is here virtual ObjectWriter* StartObject(StringPiece name) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:99:29: warning: 'EndObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* EndObject(); ^ ./google/protobuf/util/internal/object_writer.h:68:25: note: overridden virtual function is here virtual ObjectWriter* EndObject() = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:100:29: warning: 'StartList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* StartList(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:71:25: note: overridden virtual function is here virtual ObjectWriter* StartList(StringPiece name) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:101:29: warning: 'EndList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* EndList(); ^ ./google/protobuf/util/internal/object_writer.h:74:25: note: overridden virtual function is here virtual ObjectWriter* EndList() = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:102:29: warning: 'RenderBool' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderBool(StringPiece name, bool value); ^ ./google/protobuf/util/internal/object_writer.h:77:25: note: overridden virtual function is here virtual ObjectWriter* RenderBool(StringPiece name, bool value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:103:29: warning: 'RenderInt32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderInt32(StringPiece name, int32 value); ^ ./google/protobuf/util/internal/object_writer.h:80:25: note: overridden virtual function is here virtual ObjectWriter* RenderInt32(StringPiece name, int32 value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:104:29: warning: 'RenderUint32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderUint32(StringPiece name, uint32 value); ^ ./google/protobuf/util/internal/object_writer.h:83:25: note: overridden virtual function is here virtual ObjectWriter* RenderUint32(StringPiece name, uint32 value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:105:29: warning: 'RenderInt64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderInt64(StringPiece name, int64 value); ^ ./google/protobuf/util/internal/object_writer.h:86:25: note: overridden virtual function is here virtual ObjectWriter* RenderInt64(StringPiece name, int64 value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:106:29: warning: 'RenderUint64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderUint64(StringPiece name, uint64 value); ^ ./google/protobuf/util/internal/object_writer.h:89:25: note: overridden virtual function is here virtual ObjectWriter* RenderUint64(StringPiece name, uint64 value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:107:29: warning: 'RenderDouble' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderDouble(StringPiece name, double value); ^ ./google/protobuf/util/internal/object_writer.h:92:25: note: overridden virtual function is here virtual ObjectWriter* RenderDouble(StringPiece name, double value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:108:29: warning: 'RenderFloat' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderFloat(StringPiece name, float value); ^ ./google/protobuf/util/internal/object_writer.h:95:25: note: overridden virtual function is here virtual ObjectWriter* RenderFloat(StringPiece name, float value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:109:29: warning: 'RenderString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderString(StringPiece name, ^ ./google/protobuf/util/internal/object_writer.h:98:25: note: overridden virtual function is here virtual ObjectWriter* RenderString(StringPiece name, ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:111:29: warning: 'RenderBytes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderBytes(StringPiece name, StringPiece value); ^ ./google/protobuf/util/internal/object_writer.h:102:25: note: overridden virtual function is here virtual ObjectWriter* RenderBytes(StringPiece name, StringPiece value) = 0; ^ In file included from google/protobuf/util/internal/json_objectwriter.cc:31: ./google/protobuf/util/internal/json_objectwriter.h:112:29: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderNull(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:105:25: note: overridden virtual function is here virtual ObjectWriter* RenderNull(StringPiece name) = 0; ^ 14 warnings generated. depbase=`echo google/protobuf/util/internal/json_stream_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/json_stream_parser.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/json_stream_parser.lo google/protobuf/util/internal/json_stream_parser.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/json_stream_parser.lo -MD -MP -MF google/protobuf/util/internal/.deps/json_stream_parser.Tpo -c google/protobuf/util/internal/json_stream_parser.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/json_stream_parser.o depbase=`echo google/protobuf/util/internal/object_writer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/object_writer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/object_writer.lo google/protobuf/util/internal/object_writer.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/object_writer.lo -MD -MP -MF google/protobuf/util/internal/.deps/object_writer.Tpo -c google/protobuf/util/internal/object_writer.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/object_writer.o depbase=`echo google/protobuf/util/internal/protostream_objectsource.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/protostream_objectsource.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/protostream_objectsource.lo google/protobuf/util/internal/protostream_objectsource.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/protostream_objectsource.lo -MD -MP -MF google/protobuf/util/internal/.deps/protostream_objectsource.Tpo -c google/protobuf/util/internal/protostream_objectsource.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/protostream_objectsource.o depbase=`echo google/protobuf/util/internal/protostream_objectwriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/protostream_objectwriter.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/protostream_objectwriter.lo google/protobuf/util/internal/protostream_objectwriter.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/protostream_objectwriter.lo -MD -MP -MF google/protobuf/util/internal/.deps/protostream_objectwriter.Tpo -c google/protobuf/util/internal/protostream_objectwriter.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/protostream_objectwriter.o depbase=`echo google/protobuf/util/internal/proto_writer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/proto_writer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/proto_writer.lo google/protobuf/util/internal/proto_writer.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/proto_writer.lo -MD -MP -MF google/protobuf/util/internal/.deps/proto_writer.Tpo -c google/protobuf/util/internal/proto_writer.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/proto_writer.o depbase=`echo google/protobuf/util/internal/type_info.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/type_info.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/type_info.lo google/protobuf/util/internal/type_info.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/type_info.lo -MD -MP -MF google/protobuf/util/internal/.deps/type_info.Tpo -c google/protobuf/util/internal/type_info.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/type_info.o depbase=`echo google/protobuf/util/internal/type_info_test_helper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/type_info_test_helper.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/type_info_test_helper.lo google/protobuf/util/internal/type_info_test_helper.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/type_info_test_helper.lo -MD -MP -MF google/protobuf/util/internal/.deps/type_info_test_helper.Tpo -c google/protobuf/util/internal/type_info_test_helper.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/type_info_test_helper.o In file included from google/protobuf/util/internal/type_info_test_helper.cc:31: In file included from ./google/protobuf/util/internal/type_info_test_helper.h:39: ./google/protobuf/util/internal/default_value_objectwriter.h:122:37: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual DefaultValueObjectWriter* RenderNull(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:105:25: note: overridden virtual function is here virtual ObjectWriter* RenderNull(StringPiece name) = 0; ^ 1 warning generated. depbase=`echo google/protobuf/util/internal/utility.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/utility.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/internal/utility.lo google/protobuf/util/internal/utility.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/internal/utility.lo -MD -MP -MF google/protobuf/util/internal/.deps/utility.Tpo -c google/protobuf/util/internal/utility.cc -fno-common -DPIC -o google/protobuf/util/internal/.libs/utility.o depbase=`echo google/protobuf/util/json_util.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/json_util.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/util/json_util.lo google/protobuf/util/json_util.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/json_util.lo -MD -MP -MF google/protobuf/util/.deps/json_util.Tpo -c google/protobuf/util/json_util.cc -fno-common -DPIC -o google/protobuf/util/.libs/json_util.o In file included from google/protobuf/util/json_util.cc:37: ./google/protobuf/util/internal/default_value_objectwriter.h:122:37: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual DefaultValueObjectWriter* RenderNull(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:105:25: note: overridden virtual function is here virtual ObjectWriter* RenderNull(StringPiece name) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:98:29: warning: 'StartObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* StartObject(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:65:25: note: overridden virtual function is here virtual ObjectWriter* StartObject(StringPiece name) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:99:29: warning: 'EndObject' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* EndObject(); ^ ./google/protobuf/util/internal/object_writer.h:68:25: note: overridden virtual function is here virtual ObjectWriter* EndObject() = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:100:29: warning: 'StartList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* StartList(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:71:25: note: overridden virtual function is here virtual ObjectWriter* StartList(StringPiece name) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:101:29: warning: 'EndList' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* EndList(); ^ ./google/protobuf/util/internal/object_writer.h:74:25: note: overridden virtual function is here virtual ObjectWriter* EndList() = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:102:29: warning: 'RenderBool' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderBool(StringPiece name, bool value); ^ ./google/protobuf/util/internal/object_writer.h:77:25: note: overridden virtual function is here virtual ObjectWriter* RenderBool(StringPiece name, bool value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:103:29: warning: 'RenderInt32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderInt32(StringPiece name, int32 value); ^ ./google/protobuf/util/internal/object_writer.h:80:25: note: overridden virtual function is here virtual ObjectWriter* RenderInt32(StringPiece name, int32 value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:104:29: warning: 'RenderUint32' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderUint32(StringPiece name, uint32 value); ^ ./google/protobuf/util/internal/object_writer.h:83:25: note: overridden virtual function is here virtual ObjectWriter* RenderUint32(StringPiece name, uint32 value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:105:29: warning: 'RenderInt64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderInt64(StringPiece name, int64 value); ^ ./google/protobuf/util/internal/object_writer.h:86:25: note: overridden virtual function is here virtual ObjectWriter* RenderInt64(StringPiece name, int64 value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:106:29: warning: 'RenderUint64' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderUint64(StringPiece name, uint64 value); ^ ./google/protobuf/util/internal/object_writer.h:89:25: note: overridden virtual function is here virtual ObjectWriter* RenderUint64(StringPiece name, uint64 value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:107:29: warning: 'RenderDouble' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderDouble(StringPiece name, double value); ^ ./google/protobuf/util/internal/object_writer.h:92:25: note: overridden virtual function is here virtual ObjectWriter* RenderDouble(StringPiece name, double value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:108:29: warning: 'RenderFloat' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderFloat(StringPiece name, float value); ^ ./google/protobuf/util/internal/object_writer.h:95:25: note: overridden virtual function is here virtual ObjectWriter* RenderFloat(StringPiece name, float value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:109:29: warning: 'RenderString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderString(StringPiece name, ^ ./google/protobuf/util/internal/object_writer.h:98:25: note: overridden virtual function is here virtual ObjectWriter* RenderString(StringPiece name, ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:111:29: warning: 'RenderBytes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderBytes(StringPiece name, StringPiece value); ^ ./google/protobuf/util/internal/object_writer.h:102:25: note: overridden virtual function is here virtual ObjectWriter* RenderBytes(StringPiece name, StringPiece value) = 0; ^ In file included from google/protobuf/util/json_util.cc:39: ./google/protobuf/util/internal/json_objectwriter.h:112:29: warning: 'RenderNull' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual JsonObjectWriter* RenderNull(StringPiece name); ^ ./google/protobuf/util/internal/object_writer.h:105:25: note: overridden virtual function is here virtual ObjectWriter* RenderNull(StringPiece name) = 0; ^ 15 warnings generated. depbase=`echo google/protobuf/util/message_differencer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile clang++ -arch arm64 -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/arm64/include -pthread -DHAVE_PTHREAD=1 -DHAVE_ZLIB=1 -Wall -Wno-sign-compare -falign-functions=64 -Wall -g -O2 -MT google/protobuf/util/message_differencer.lo -MD -MP -MF $depbase.Tpo -c -o 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&& ln -s libprotobuf.19.dylib libprotobuf.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libprotobuf.lai /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.la libtool: install: /usr/bin/install -c .libs/libprotoc.19.dylib /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotoc.19.dylib libtool: install: (cd /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib && { ln -s -f libprotoc.19.dylib libprotoc.dylib || { rm -f libprotoc.dylib && ln -s libprotoc.19.dylib libprotoc.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libprotoc.lai /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotoc.la .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c protoc '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/bin' libtool: install: /usr/bin/install -c .libs/protoc /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/bin/protoc .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/descriptor.proto google/protobuf/any.proto google/protobuf/api.proto google/protobuf/duration.proto google/protobuf/empty.proto google/protobuf/field_mask.proto google/protobuf/source_context.proto google/protobuf/struct.proto google/protobuf/timestamp.proto google/protobuf/type.proto google/protobuf/wrappers.proto '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' /usr/bin/install -c -m 644 google/protobuf/compiler/plugin.proto '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/any.pb.h google/protobuf/api.pb.h google/protobuf/any.h google/protobuf/arena.h google/protobuf/arena_impl.h google/protobuf/arenastring.h google/protobuf/descriptor_database.h google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/duration.pb.h google/protobuf/dynamic_message.h google/protobuf/empty.pb.h google/protobuf/extension_set.h google/protobuf/extension_set_inl.h google/protobuf/field_mask.pb.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_enum_util.h google/protobuf/generated_message_reflection.h google/protobuf/generated_message_table_driven.h google/protobuf/generated_message_util.h google/protobuf/has_bits.h google/protobuf/implicit_weak_message.h google/protobuf/inlined_string_field.h google/protobuf/map_entry.h google/protobuf/map_entry_lite.h google/protobuf/map_field.h google/protobuf/map_field_inl.h google/protobuf/map_field_lite.h google/protobuf/map.h google/protobuf/map_type_handler.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/metadata.h google/protobuf/metadata_lite.h google/protobuf/parse_context.h google/protobuf/port.h google/protobuf/port_def.inc google/protobuf/port_undef.inc google/protobuf/reflection.h google/protobuf/reflection_ops.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp' /usr/bin/install -c -m 644 google/protobuf/compiler/cpp/cpp_generator.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs' /usr/bin/install -c -m 644 google/protobuf/stubs/callback.h google/protobuf/stubs/bytestream.h google/protobuf/stubs/casts.h google/protobuf/stubs/common.h google/protobuf/stubs/fastmem.h google/protobuf/stubs/hash.h google/protobuf/stubs/logging.h google/protobuf/stubs/macros.h google/protobuf/stubs/mutex.h google/protobuf/stubs/once.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/port.h google/protobuf/stubs/status.h google/protobuf/stubs/stl_util.h google/protobuf/stubs/stringpiece.h google/protobuf/stubs/strutil.h google/protobuf/stubs/template_util.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io' /usr/bin/install -c -m 644 google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/strtod.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/source_context.pb.h google/protobuf/struct.pb.h google/protobuf/text_format.h google/protobuf/timestamp.pb.h google/protobuf/type.pb.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wrappers.pb.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' /usr/bin/install -c -m 644 google/protobuf/compiler/code_generator.h google/protobuf/compiler/command_line_interface.h google/protobuf/compiler/importer.h google/protobuf/compiler/parser.h google/protobuf/compiler/plugin.h google/protobuf/compiler/plugin.pb.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' .././install-sh -c -d '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util' /usr/bin/install -c -m 644 google/protobuf/util/type_resolver.h google/protobuf/util/delimited_message_util.h google/protobuf/util/field_comparator.h google/protobuf/util/field_mask_util.h google/protobuf/util/json_util.h google/protobuf/util/time_util.h google/protobuf/util/type_resolver_util.h google/protobuf/util/message_differencer.h '/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util' configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -fPIC -I../inst/include/ -I/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/ -o GatingSet_pb_lib/libGatingSet.pb.dylib GatingSet_pb_lib/GatingSet.pb.cc mkdir -p "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" cp -r /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/google /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include mkdir -p "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/" cp /Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf* /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/ cp GatingSet_pb_lib/libGatingSet.pb.dylib /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib//libGatingSet.pb.dylib clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I/Users/biocbuild/bbs-3.20-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dummy.cpp -o dummy.o clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o RProtoBufLib.so dummy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RProtoBufLib)