Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-27 11:40 -0400 (Tue, 27 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4415 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1642/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Rarr 1.5.0 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the Rarr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Rarr |
Version: 1.5.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:Rarr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings Rarr_1.5.0.tar.gz |
StartedAt: 2024-08-27 02:55:30 -0400 (Tue, 27 Aug 2024) |
EndedAt: 2024-08-27 02:56:13 -0400 (Tue, 27 Aug 2024) |
EllapsedTime: 43.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Rarr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:Rarr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings Rarr_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/Rarr.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘Rarr/DESCRIPTION’ ... OK * this is package ‘Rarr’ version ‘1.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: inst/extdata/zarr_examples/column-first/Unicode.zarr/.zarray inst/extdata/zarr_examples/column-first/boolean.zarr/.zarray inst/extdata/zarr_examples/column-first/float16.zarr/.zarray inst/extdata/zarr_examples/column-first/float32.zarr/.zarray inst/extdata/zarr_examples/column-first/float64.zarr/.zarray inst/extdata/zarr_examples/column-first/int16.zarr/.zarray inst/extdata/zarr_examples/column-first/int32.zarr/.zarray inst/extdata/zarr_examples/column-first/int64.zarr/.zarray inst/extdata/zarr_examples/column-first/int8.zarr/.zarray inst/extdata/zarr_examples/column-first/string.zarr/.zarray inst/extdata/zarr_examples/column-first/uint16.zarr/.zarray inst/extdata/zarr_examples/column-first/uint32.zarr/.zarray inst/extdata/zarr_examples/column-first/uint64.zarr/.zarray inst/extdata/zarr_examples/column-first/uint8.zarr/.zarray inst/extdata/zarr_examples/column-first/vlenUTF8.zarr/.zarray inst/extdata/zarr_examples/compression/bzip2.zarr/.zarray inst/extdata/zarr_examples/compression/lz4.zarr/.zarray inst/extdata/zarr_examples/compression/lzma.zarr/.zarray inst/extdata/zarr_examples/compression/zlib.zarr/.zarray inst/extdata/zarr_examples/compression/zstd.zarr/.zarray inst/extdata/zarr_examples/fill-values/double-inf.zarr/.zarray inst/extdata/zarr_examples/fill-values/double-neginf.zarr/.zarray inst/extdata/zarr_examples/row-first/float16.zarr/.zarray inst/extdata/zarr_examples/row-first/float32.zarr/.zarray inst/extdata/zarr_examples/row-first/float64.zarr/.zarray inst/extdata/zarr_examples/row-first/int16.zarr/.zarray inst/extdata/zarr_examples/row-first/int32.zarr/.zarray inst/extdata/zarr_examples/row-first/int64.zarr/.zarray inst/extdata/zarr_examples/row-first/int8.zarr/.zarray inst/extdata/zarr_examples/row-first/string.zarr/.zarray inst/extdata/zarr_examples/row-first/uint32.zarr/.zarray inst/extdata/zarr_examples/row-first/uint64.zarr/.zarray inst/extdata/zarr_examples/row-first/uint8.zarr/.zarray These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rarr’ can be installed ... OK * used C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ * checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: libs 5.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘tinytest.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 5 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/Rarr.Rcheck/00check.log’ for details.
Rarr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL Rarr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘Rarr’ ... ** using staged installation NO_RLIB= R_CPPFLAGS=-I/home/biocbuild/bbs-3.20-bioc/R/include configure: is Bioc build machine configure: configuring the Zstd filter... configure: compiling bundled Zstd library configure: configuring the BLOSC filter... configure: compiling bundled BLOSC library checking whether C compiler accepts -msse2... no configure: Bioc build machine; disabling MAVX2 checking for gcc __builtin_cpu_init function... (cached) true checking for x86 sse2 instruction support... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/compression_tools/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/compression_tools/blosc/Makefile config.status: creating src/compression_tools/blosc/lib/snappy-1.1.1/Makefile ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c Rarr.c -o Rarr.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c bit64_conversion.c -o bit64_conversion.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c compress.c -o compress.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c decompress.c -o decompress.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c float16_conversion.c -o float16_conversion.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c type_conversion.c -o type_conversion.o make -C compression_tools/zstd make[1]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/zstd' gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o gcc -g -O2 -Wall -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o rm -f libzstd.a ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o ranlib libzstd.a make[1]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/zstd' make -C compression_tools/blosc make[1]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc' make -C lib/snappy-1.1.1 make[2]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' g++ -std=gnu++17 -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -DUSING_R -c snappy.cc snappy.cc: In member function ‘bool snappy::SnappyIOVecWriter::Append(const char*, size_t)’: snappy.cc:1021:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 1021 | if (curr_iov_index_ + 1 >= output_iov_count_) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ snappy.cc: In member function ‘bool snappy::SnappyIOVecWriter::AppendFromSelf(size_t, size_t)’: snappy.cc:1103:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 1103 | if (curr_iov_index_ + 1 >= output_iov_count_) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ snappy.cc: At global scope: snappy.cc:578:13: warning: ‘void snappy::ComputeTable()’ defined but not used [-Wunused-function] 578 | static void ComputeTable() { | ^~~~~~~~~~~~ g++ -std=gnu++17 -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -DUSING_R -c snappy-c.cc g++ -std=gnu++17 -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -DUSING_R -c snappy-sinksource.cc g++ -std=gnu++17 -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -DUSING_R -c snappy-stubs-internal.cc make[2]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' make -C lib/lz4-1.9.2 make[2]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' gcc -g -O2 -Wall -fpic -DNLZ4_DEBUG -c lz4.c gcc -g -O2 -Wall -fpic -DNLZ4_DEBUG -c lz4hc.c make[2]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' make -C lib/blosc-1.20.1 all make[2]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c bitshuffle-generic.c gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle-generic.c gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle.c shuffle.c: In function ‘get_shuffle_implementation’: shuffle.c:316:22: warning: unused variable ‘cpu_features’ [-Wunused-variable] 316 | blosc_cpu_features cpu_features = blosc_get_cpu_features(); | ^~~~~~~~~~~~ In file included from shuffle.c:12: At top level: shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function] 61 | static void unshuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~~~ shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function] 32 | static void shuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosclz.c gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosc.c blosc.c:303:12: warning: ‘compname_to_clibcode’ defined but not used [-Wunused-function] 303 | static int compname_to_clibcode(const char *compname) | ^~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Wall -fpic -I/usr/local/include -I/home/biocbuild/bbs-3.20-bioc/R/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c fastcopy.c make[2]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o ranlib libblosc.a make[1]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc' gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o Rarr.so Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o ./compression_tools/blosc/libblosc.a ./compression_tools/zstd/libzstd.a -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-Rarr/00new/Rarr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rarr)
Rarr.Rcheck/tests/tinytest.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if (requireNamespace("tinytest", quietly = TRUE)) { + tinytest::test_package("Rarr") + } test_argument_handling.R...... 1 tests [0;32mOK[0m [0;36m50ms[0m test_boolean.R................ 0 tests test_boolean.R................ 0 tests test_boolean.R................ 1 tests [0;32mOK[0m test_boolean.R................ 2 tests [0;32mOK[0m test_boolean.R................ 3 tests [0;32mOK[0m test_boolean.R................ 4 tests [0;32mOK[0m test_boolean.R................ 5 tests [0;32mOK[0m [0;36m10ms[0m test_datatypes.R.............. 1 tests [0;32mOK[0m test_datatypes.R.............. 2 tests [0;32mOK[0m test_datatypes.R.............. 3 tests [0;32mOK[0m test_datatypes.R.............. 4 tests [0;32mOK[0m test_datatypes.R.............. 5 tests [0;32mOK[0m test_datatypes.R.............. 6 tests [0;32mOK[0m test_datatypes.R.............. 7 tests [0;32mOK[0m test_datatypes.R.............. 8 tests [0;32mOK[0m test_datatypes.R.............. 9 tests [0;32mOK[0m test_datatypes.R.............. 10 tests [0;32mOK[0m test_datatypes.R.............. 11 tests [0;32mOK[0m test_datatypes.R.............. 12 tests [0;32mOK[0m test_datatypes.R.............. 13 tests [0;32mOK[0m test_datatypes.R.............. 14 tests [0;32mOK[0m test_datatypes.R.............. 15 tests [0;32mOK[0m test_datatypes.R.............. 16 tests [0;32mOK[0m [0;36m5ms[0m test_decompression.R.......... 0 tests test_decompression.R.......... 15 tests [0;32mOK[0m [0;36m17ms[0m test_fill_values.R............ 0 tests test_fill_values.R............ 0 tests test_fill_values.R............ 10 tests [0;32mOK[0m [0;36m9ms[0m test_float16.R................ 0 tests test_float16.R................ 0 tests test_float16.R................ 0 tests test_float16.R................ 1 tests [0;32mOK[0m test_float16.R................ 2 tests [0;32mOK[0m test_float16.R................ 3 tests [0;32mOK[0m test_float16.R................ 4 tests [0;32mOK[0m test_float16.R................ 5 tests [0;32mOK[0m test_float16.R................ 6 tests [0;32mOK[0m test_float16.R................ 7 tests [0;32mOK[0m test_float16.R................ 8 tests [0;32mOK[0m test_float16.R................ 9 tests [0;32mOK[0m [0;36m12ms[0m test_float32.R................ 0 tests test_float32.R................ 0 tests test_float32.R................ 0 tests test_float32.R................ 1 tests [0;32mOK[0m test_float32.R................ 2 tests [0;32mOK[0m test_float32.R................ 3 tests [0;32mOK[0m test_float32.R................ 4 tests [0;32mOK[0m test_float32.R................ 5 tests [0;32mOK[0m test_float32.R................ 6 tests [0;32mOK[0m test_float32.R................ 7 tests [0;32mOK[0m [0;36m12ms[0m test_float64.R................ 0 tests test_float64.R................ 0 tests test_float64.R................ 0 tests test_float64.R................ 1 tests [0;32mOK[0m test_float64.R................ 2 tests [0;32mOK[0m test_float64.R................ 3 tests [0;32mOK[0m test_float64.R................ 4 tests [0;32mOK[0m test_float64.R................ 5 tests [0;32mOK[0m test_float64.R................ 6 tests [0;32mOK[0m test_float64.R................ 7 tests [0;32mOK[0m [0;36m12ms[0m test_int16.R.................. 0 tests test_int16.R.................. 0 tests test_int16.R.................. 0 tests test_int16.R.................. 1 tests [0;32mOK[0m test_int16.R.................. 2 tests [0;32mOK[0m test_int16.R.................. 3 tests [0;32mOK[0m test_int16.R.................. 4 tests [0;32mOK[0m test_int16.R.................. 5 tests [0;32mOK[0m test_int16.R.................. 6 tests [0;32mOK[0m test_int16.R.................. 7 tests [0;32mOK[0m [0;36m12ms[0m test_int32.R.................. 0 tests test_int32.R.................. 0 tests test_int32.R.................. 0 tests test_int32.R.................. 1 tests [0;32mOK[0m test_int32.R.................. 2 tests [0;32mOK[0m test_int32.R.................. 3 tests [0;32mOK[0m test_int32.R.................. 4 tests [0;32mOK[0m test_int32.R.................. 5 tests [0;32mOK[0m test_int32.R.................. 6 tests [0;32mOK[0m test_int32.R.................. 7 tests [0;32mOK[0m [0;36m12ms[0m test_int64.R.................. 0 tests test_int64.R.................. 0 tests test_int64.R.................. 0 tests test_int64.R.................. 1 tests [0;32mOK[0m test_int64.R.................. 2 tests [0;32mOK[0m test_int64.R.................. 3 tests [0;32mOK[0m test_int64.R.................. 4 tests [0;32mOK[0m test_int64.R.................. 5 tests [0;32mOK[0m test_int64.R.................. 6 tests [0;32mOK[0m test_int64.R.................. 7 tests [0;32mOK[0m test_int64.R.................. 8 tests [0;32mOK[0m test_int64.R.................. 9 tests [0;32mOK[0m test_int64.R.................. 10 tests [0;32mOK[0m test_int64.R.................. 11 tests [0;32mOK[0m test_int64.R.................. 12 tests [0;32mOK[0m test_int64.R.................. 13 tests [0;32mOK[0m test_int64.R.................. 14 tests [0;32mOK[0m test_int64.R.................. 15 tests [0;32mOK[0m [0;36m20ms[0m test_int8.R................... 0 tests test_int8.R................... 0 tests test_int8.R................... 0 tests test_int8.R................... 1 tests [0;32mOK[0m test_int8.R................... 2 tests [0;32mOK[0m test_int8.R................... 3 tests [0;32mOK[0m test_int8.R................... 4 tests [0;32mOK[0m test_int8.R................... 5 tests [0;32mOK[0m test_int8.R................... 6 tests [0;32mOK[0m test_int8.R................... 7 tests [0;32mOK[0m [0;36m12ms[0m test_normalize_path.R......... 0 tests test_normalize_path.R......... 0 tests test_normalize_path.R......... 5 tests [0;32mOK[0m [0;36m3ms[0m test_read_metadata.R.......... 0 tests test_read_metadata.R.......... 0 tests test_read_metadata.R.......... 1 tests [0;32mOK[0m test_read_metadata.R.......... 2 tests [0;32mOK[0m test_read_metadata.R.......... 3 tests [0;32mOK[0m [0;36m7ms[0m test_roundtrip.R.............. 0 tests test_roundtrip.R.............. 1 tests [0;32mOK[0m test_roundtrip.R.............. 2 tests [0;32mOK[0m test_roundtrip.R.............. 3 tests [0;32mOK[0m test_roundtrip.R.............. 3 tests [0;32mOK[0m test_roundtrip.R.............. 3 tests [0;32mOK[0m test_roundtrip.R.............. 4 tests [0;32mOK[0m test_roundtrip.R.............. 5 tests [0;32mOK[0m test_roundtrip.R.............. 5 tests [0;32mOK[0m test_roundtrip.R.............. 6 tests [0;32mOK[0m test_roundtrip.R.............. 7 tests [0;32mOK[0m test_roundtrip.R.............. 7 tests [0;32mOK[0m test_roundtrip.R.............. 8 tests [0;32mOK[0m test_roundtrip.R.............. 9 tests [0;32mOK[0m test_roundtrip.R.............. 9 tests [0;32mOK[0m test_roundtrip.R.............. 10 tests [0;32mOK[0m test_roundtrip.R.............. 11 tests [0;32mOK[0m test_roundtrip.R.............. 11 tests [0;32mOK[0m test_roundtrip.R.............. 12 tests [0;32mOK[0m test_roundtrip.R.............. 13 tests [0;32mOK[0m test_roundtrip.R.............. 13 tests [0;32mOK[0m test_roundtrip.R.............. 14 tests [0;32mOK[0m test_roundtrip.R.............. 15 tests [0;32mOK[0m test_roundtrip.R.............. 15 tests [0;32mOK[0m test_roundtrip.R.............. 16 tests [0;32mOK[0m test_roundtrip.R.............. 17 tests [0;32mOK[0m test_roundtrip.R.............. 17 tests [0;32mOK[0m test_roundtrip.R.............. 18 tests [0;32mOK[0m test_roundtrip.R.............. 19 tests [0;32mOK[0m test_roundtrip.R.............. 19 tests [0;32mOK[0m test_roundtrip.R.............. 20 tests [0;32mOK[0m test_roundtrip.R.............. 21 tests [0;32mOK[0m test_roundtrip.R.............. 21 tests [0;32mOK[0m test_roundtrip.R.............. 22 tests [0;32mOK[0m test_roundtrip.R.............. 23 tests [0;32mOK[0m [0;34m0.7s[0m test_s3.R..................... 0 tests test_s3.R..................... 0 tests Loading required package: mockery test_s3.R..................... 1 tests [0;32mOK[0m [0;34m2.1s[0m test_string.R................. 0 tests test_string.R................. 0 tests test_string.R................. 0 tests test_string.R................. 1 tests [0;32mOK[0m test_string.R................. 2 tests [0;32mOK[0m test_string.R................. 3 tests [0;32mOK[0m test_string.R................. 4 tests [0;32mOK[0m test_string.R................. 5 tests [0;32mOK[0m test_string.R................. 6 tests [0;32mOK[0m test_string.R................. 7 tests [0;32mOK[0m test_string.R................. 7 tests [0;32mOK[0m test_string.R................. 8 tests [0;32mOK[0m test_string.R................. 9 tests [0;32mOK[0m test_string.R................. 9 tests [0;32mOK[0m test_string.R................. 10 tests [0;32mOK[0m test_string.R................. 11 tests [0;32mOK[0m test_string.R................. 11 tests [0;32mOK[0m test_string.R................. 11 tests [0;32mOK[0m test_string.R................. 12 tests [0;32mOK[0m test_string.R................. 13 tests [0;32mOK[0m test_string.R................. 14 tests [0;32mOK[0m test_string.R................. 14 tests [0;32mOK[0m test_string.R................. 15 tests [0;32mOK[0m test_string.R................. 16 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 17 tests [0;32mOK[0m test_string.R................. 18 tests [0;32mOK[0m [0;34m0.3s[0m test_uint16.R................. 0 tests test_uint16.R................. 0 tests test_uint16.R................. 1 tests [0;32mOK[0m test_uint16.R................. 2 tests [0;32mOK[0m test_uint16.R................. 3 tests [0;32mOK[0m test_uint16.R................. 4 tests [0;32mOK[0m test_uint16.R................. 5 tests [0;32mOK[0m [0;36m7ms[0m test_uint32.R................. 0 tests test_uint32.R................. 0 tests test_uint32.R................. 0 tests test_uint32.R................. 1 tests [0;32mOK[0m test_uint32.R................. 2 tests [0;32mOK[0m test_uint32.R................. 3 tests [0;32mOK[0m test_uint32.R................. 4 tests [0;32mOK[0m test_uint32.R................. 5 tests [0;32mOK[0m test_uint32.R................. 6 tests [0;32mOK[0m test_uint32.R................. 7 tests [0;32mOK[0m test_uint32.R................. 8 tests [0;32mOK[0m test_uint32.R................. 9 tests [0;32mOK[0m test_uint32.R................. 10 tests [0;32mOK[0m test_uint32.R................. 11 tests [0;32mOK[0m [0;36m20ms[0m test_uint64.R................. 0 tests test_uint64.R................. 0 tests test_uint64.R................. 1 tests [0;32mOK[0m test_uint64.R................. 2 tests [0;32mOK[0m test_uint64.R................. 3 tests [0;32mOK[0m test_uint64.R................. 4 tests [0;32mOK[0m test_uint64.R................. 5 tests [0;32mOK[0m test_uint64.R................. 6 tests [0;32mOK[0m test_uint64.R................. 7 tests [0;32mOK[0m [0;36m8ms[0m test_uint8.R.................. 0 tests test_uint8.R.................. 0 tests test_uint8.R.................. 1 tests [0;32mOK[0m test_uint8.R.................. 2 tests [0;32mOK[0m test_uint8.R.................. 3 tests [0;32mOK[0m test_uint8.R.................. 4 tests [0;32mOK[0m test_uint8.R.................. 5 tests [0;32mOK[0m [0;36m6ms[0m test_update_zarr.R............ 0 tests test_update_zarr.R............ 0 tests test_update_zarr.R............ 0 tests test_update_zarr.R............ 1 tests [0;32mOK[0m test_update_zarr.R............ 2 tests [0;32mOK[0m test_update_zarr.R............ 3 tests [0;32mOK[0m test_update_zarr.R............ 3 tests [0;32mOK[0m test_update_zarr.R............ 4 tests [0;32mOK[0m test_update_zarr.R............ 5 tests [0;32mOK[0m test_update_zarr.R............ 6 tests [0;32mOK[0m [0;36m13ms[0m test_url_parsing.R............ 0 tests test_url_parsing.R............ 10 tests [0;32mOK[0m test_url_parsing.R............ 15 tests [0;32mOK[0m test_url_parsing.R............ 16 tests [0;32mOK[0m test_url_parsing.R............ 17 tests [0;32mOK[0m test_url_parsing.R............ 18 tests [0;32mOK[0m [0;36m6ms[0m test_utils.R.................. 1 tests [0;32mOK[0m test_utils.R.................. 2 tests [0;32mOK[0m test_utils.R.................. 3 tests [0;32mOK[0m [0;36m2ms[0m All ok, 211 results (3.3s) > > proc.time() user system elapsed 1.850 0.157 4.012
Rarr.Rcheck/Rarr-Ex.timings
name | user | system | elapsed | |
compressors | 0.181 | 0.016 | 0.197 | |
create_empty_zarr_array | 0.002 | 0.000 | 0.002 | |
read_zarr_array | 0.013 | 0.009 | 0.023 | |
update_zarr_array | 0.003 | 0.004 | 0.006 | |
write_zarr_array | 0.004 | 0.000 | 0.004 | |
zarr_overview | 0.002 | 0.000 | 0.002 | |