Mustafa Erhan Ozer
| Snapshot Date: 2024-07-02 14:00 -0400 (Tue, 02 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: b5eba63 |
| git_last_commit_date: 2024-04-30 11:49:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-03 11:41 -0400 (Wed, 03 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4413 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2056/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz |
| StartedAt: 2024-07-03 05:13:39 -0400 (Wed, 03 Jul 2024) |
| EndedAt: 2024-07-03 05:17:51 -0400 (Wed, 03 Jul 2024) |
| EllapsedTime: 252.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4843,3759,100303755,5770,5293,5071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 19,9619,4221,4803,3054,54802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7422,3485,51079,6569,5581,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5507,540,102,5250,10135,3556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,3931,23129,50615,4126,366
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,54210,6288,29929,7133,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,4982,1066,7015,1544,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,1361,5257,1965,3240,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3394,7035,10165,10062,35,116931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6339,409,1509,2834,2006,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116228,2348,291,2538,51316,6659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1786,650,5727,657,1149,4255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,5364,3105,120227,7082,2487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,401,1514,1337,387082,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10522,54575,5788,2646,7287,5192
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11200,6517,217,2512,1033,653509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9365,80854,6714,116085,5370,23586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,51441,5644,57176,10094,3932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3625,4285,116985,7919,100125288,10886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,10466,27445,1203,3712,475
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1027,3507,7442,6530,7919,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55867,10577,729238,6390,653,5245
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,5836,51079,80267,1182,3484
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,1992,1548,7077,80224,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,6402,7389,6519,7369,80724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6338,7386,48,79731,6752,3101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 866,34,2310,5256,83854,22797
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 493856,1340,10845,4099,10134,55600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255231,5715,64116,4552,25821,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51703,29968,4891,51167,4358,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 113235,10195,50507,5295,5080,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,5727,4567,60,6647,55805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,4153,4723,84300,149775,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,4057,5825,1146,728642,102
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4150,4889,2266,4548,665,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,2303,7167,6804,3958,4688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11254,4887,29880,54809,2804,100156321
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3939,2784,5792,3030,2904,124976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3250,4854,53346,2937,100131801,6714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,56923,841,5245,4535,165
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,1594,6569,9180,2847,654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,522,30061,5629,351,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2690,22845,124976,9663,23576,595
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,10295,2949,9241,1277,6696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7412,4502,5092,4478,5126,10352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,4544,4982,3703,1033,51660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,275,84833,3948,80724,6513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7225,56718,5345,2555,255738,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6329,1581,4171,1520,6097,9054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2984,5069,2180,10891,10938,6347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,177,55816,6526,64240,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,6517,1356,90624,6524,4968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,7295,3145,4162,6752,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10730,1186,3615,5588,55283,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,10159,4702,336,4976,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,728441,3074,3486,56606,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2710,338557,53632,51204,4598,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,1893,8818,102,1029,1118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7049,9965,7525,101180976,3600,6347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,7078,54822,5499,9369,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,1718,5443,2026,4055,3815
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,6530,344905,1807,4160,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6526,23389,9388,6522,3034,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7424,7391,7253,3312,160428,4018
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2581,3303,83854,6383,6620,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,2701,83440,57107,2303,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 118,3645,2068,4478,4650,9180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,3802,5589,3931,5188,54982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4722,27097,54809,2591,10628,3406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5920,1071,3815,7036,3417,54915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407007,3489,6564,23576,10062,5538
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 581,51052,387,7442,10020,3803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3691,3763,477,648998,1146,406913
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,2712,6351,125170,3762,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,54704,8675,6402,79587,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,5799,6382,440138,111,7412
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3075,653,1493,5562,81031,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1270,57818,3087,5468,3034,5728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6288,100133941,4017,6515,8942,5781
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
42.46 1.62 44.06
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.42 | 0.08 | 0.50 | |