Aaron Lun
| Snapshot Date: 2024-06-30 14:00 -0400 (Sun, 30 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/beachmat.hdf5 |
| git_branch: devel |
| git_last_commit: 1cc494d |
| git_last_commit_date: 2024-05-22 17:50:40 -0400 (Wed, 22 May 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-01 11:44 -0400 (Mon, 01 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4409 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 146/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| beachmat.hdf5 1.3.1 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the beachmat.hdf5 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beachmat.hdf5.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: beachmat.hdf5 |
| Version: 1.3.1 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL beachmat.hdf5 |
| StartedAt: 2024-06-30 19:24:24 -0000 (Sun, 30 Jun 2024) |
| EndedAt: 2024-06-30 19:26:24 -0000 (Sun, 30 Jun 2024) |
| EllapsedTime: 120.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL beachmat.hdf5 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.0/site-library’ * installing *source* package ‘beachmat.hdf5’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++17 g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -I../inst/include -DNDEBUG -I'/home/biocbuild/R/R-4.4.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.0/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -I../inst/include -DNDEBUG -I'/home/biocbuild/R/R-4.4.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.0/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c initialize_from_hdf5.cpp -o initialize_from_hdf5.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -I../inst/include -DNDEBUG -I'/home/biocbuild/R/R-4.4.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.0/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c load_into_memory.cpp -o load_into_memory.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.0/lib -L/usr/local/lib -o beachmat.hdf5.so RcppExports.o initialize_from_hdf5.o load_into_memory.o /home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/lib/libhdf5.a -L/home/biocbuild/R/R-4.4.0/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/biocbuild/R/R-4.4.0/lib -lR installing to /home/biocbuild/R/R-4.4.0/site-library/00LOCK-beachmat.hdf5/00new/beachmat.hdf5/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (beachmat.hdf5)