Pierrick Roger
| Snapshot Date: 2024-11-04 13:40 -0500 (Mon, 04 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/biodb |
| git_branch: RELEASE_3_20 |
| git_last_commit: 7882277 |
| git_last_commit_date: 2024-10-29 10:59:40 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-05 12:08 -0500 (Tue, 05 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4503 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 201/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodb 1.14.0 (landing page) Pierrick Roger
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodb |
| Version: 1.14.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodb_1.14.0.tar.gz |
| StartedAt: 2024-11-05 05:52:10 -0000 (Tue, 05 Nov 2024) |
| EndedAt: 2024-11-05 05:58:10 -0000 (Tue, 05 Nov 2024) |
| EllapsedTime: 359.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodb.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodb_1.14.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodb/DESCRIPTION’ ... OK
* this is package ‘biodb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.gitlab-ci.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodb’ can be installed ... WARNING
Found the following significant warnings:
closeMatchPpm.cpp:251:9: warning: 'void free(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
* checking installed package size ... NOTE
installed size is 9.4Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 6.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) BiodbMain.Rd:101: Lost braces
101 | Closes \\code{BiodbMain} instance. Call this method when you are done with
| ^
checkRd: (-1) BiodbMain.Rd:102: Lost braces
102 | your \\code{BiodbMain} instance.
| ^
checkRd: (-1) BiodbMain.Rd:124: Lost braces
124 | \\code{BiodbMain} (databases, fields or configuration keys).}
| ^
checkRd: (-1) BiodbMain.Rd:138: Lost braces
138 | Returns the single instance of the \\code{BiodbConfig} class.
| ^
checkRd: (-1) BiodbMain.Rd:144: Lost braces
144 | The instance of the \\code{BiodbConfig} class attached to
| ^
checkRd: (-1) BiodbMain.Rd:166: Lost braces
166 | Returns the single instance of the \\code{BiodbDbsInfo} class.
| ^
checkRd: (-1) BiodbMain.Rd:172: Lost braces
172 | The instance of the \\code{BiodbDbsInfo} class attached to
| ^
checkRd: (-1) BiodbMain.Rd:180: Lost braces
180 | Returns the single instance of the \\code{BiodbEntryFields} class.
| ^
checkRd: (-1) BiodbMain.Rd:186: Lost braces
186 | The instance of the \\code{BiodbEntryFields} class
| ^
checkRd: (-1) BiodbMain.Rd:194: Lost braces
194 | Returns the single instance of the \\code{BiodbFactory} class.
| ^
checkRd: (-1) BiodbMain.Rd:200: Lost braces
200 | The instance of the \\code{BiodbFactory} class attached to
| ^
checkRd: (-1) BiodbMain.Rd:208: Lost braces
208 | Returns the single instance of the \\code{BiodbRequestScheduler}
| ^
checkRd: (-1) BiodbMain.Rd:215: Lost braces
215 | The instance of the \\code{BiodbRequestScheduler} class
| ^
checkRd: (-1) BiodbMain.Rd:291: Lost braces
291 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances.}
| ^
checkRd: (-1) BiodbMain.Rd:295: Lost braces
295 | \item{\code{flatten}}{If set to \\code{TRUE} and the field has a cardinality
| ^
checkRd: (-1) BiodbMain.Rd:299: Lost braces
299 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be
| ^
checkRd: (-1) BiodbMain.Rd:312: Lost braces
312 | \\code{TRUE}, otherwise a list.
| ^
checkRd: (-1) BiodbMain.Rd:320: Lost braces
320 | (\\code{BiodbEntry} objects) into a data frame.
| ^
checkRd: (-1) BiodbMain.Rd:341: Lost braces
341 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances or a list of list of
| ^
checkRd: (-1) BiodbMain.Rd:342: Lost braces
342 | \\code{BiodbEntry} instances.}
| ^
checkRd: (-1) BiodbMain.Rd:344: Lost braces
344 | \item{\code{only.atomic}}{If set to \\code{TRUE}, output only atomic fields, i.e.:
| ^
checkRd: (-1) BiodbMain.Rd:348: Lost braces
348 | \item{\code{null.to.na}}{If set to \\code{TRUE}, each \\code{NULL} entry in the
| ^
checkRd: (-1) BiodbMain.Rd:348: Lost braces
348 | \item{\code{null.to.na}}{If set to \\code{TRUE}, each \\code{NULL} entry in the
| ^
checkRd: (-1) BiodbMain.Rd:351: Lost braces
351 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be output.}
| ^
checkRd: (-1) BiodbMain.Rd:360: Lost braces
360 | \item{\code{drop}}{If set to \\code{TRUE} and the resulting data frame has only one
| ^
checkRd: (-1) BiodbMain.Rd:365: Lost braces
365 | \item{\code{flatten}}{If set to \\code{TRUE}, then each field with a cardinality
| ^
checkRd: (-1) BiodbMain.Rd:467: Lost braces
467 | Converts a list of \\code{BiodbEntry} objects into JSON. Returns a vector of
| ^
checkRd: (-1) BiodbMain.Rd:476: Lost braces
476 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
| ^
checkRd: (-1) BiodbMain.Rd:479: Lost braces
479 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will added to JSON
| ^
checkRd: (-1) BiodbMain.Rd:595: Lost braces
595 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
| ^
checkRd: (-1) BiodbMain.Rd:617: Lost braces
617 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
| ^
checkRd: (-1) BiodbMain.Rd:623: Lost braces
623 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be saved too.}
| ^
checkRd: (-1) BiodbMain.Rd:649: Lost braces
649 | \\code{NULL}, copy the whole database.}
| ^
checkRd: (-1) BiodbMain.Rd:675: Lost braces
675 | method is \\code{BiodbEntryField :isVector()}."
| ^
checkRd: (-1) BiodbPersistentCache.Rd:120: Lost braces
120 | \item{\code{conn}}{If not \\code{NULL}, checks if the cache system is readable for
| ^
checkRd: (-1) BiodbPersistentCache.Rd:126: Lost braces
126 | \\code{TRUE} if the cache system is readable,
| ^
checkRd: (-1) BiodbPersistentCache.Rd:127: Lost braces
127 | \\code{FALSE} otherwise.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:142: Lost braces
142 | \item{\code{conn}}{If not \\code{NULL}, checks if the cache system is writable for
| ^
checkRd: (-1) BiodbPersistentCache.Rd:148: Lost braces
148 | \\code{TRUE} if the cache system is writable,
| ^
checkRd: (-1) BiodbPersistentCache.Rd:149: Lost braces
149 | \\code{FALSE} otherwise.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:230: Lost braces
230 | A character vector, the same size as \\code{names},
| ^
checkRd: (-1) BiodbPersistentCache.Rd:276: Lost braces
276 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:276: Lost braces
276 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:277: Lost braces
277 | value if the file exists in the cache, or \\code{FALSE} otherwise.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:302: Lost braces
302 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:302: Lost braces
302 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:303: Lost braces
303 | value if the file exists in the cache, or \\code{FALSE} otherwise.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:325: Lost braces
325 | A logical vector, the same size as \\code{name}, with
| ^
checkRd: (-1) BiodbPersistentCache.Rd:326: Lost braces
326 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:326: Lost braces
326 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:351: Lost braces
351 | A logical vector, the same size as \\code{name}, with
| ^
checkRd: (-1) BiodbPersistentCache.Rd:352: Lost braces
352 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:352: Lost braces
352 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:428: Lost braces
428 | \item{\code{output.vector}}{If set to \\code{TRUE}, force output to be a
| ^
checkRd: (-1) BiodbPersistentCache.Rd:429: Lost braces
429 | \\code{vector} instead of a \\code{list}. Where the list contains a
| ^
checkRd: (-1) BiodbPersistentCache.Rd:429: Lost braces
429 | \\code{vector} instead of a \\code{list}. Where the list contains a
| ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:435: Lost braces
435 | A list (or a vector if \\code{output.vector} is set to
| ^
checkRd: (-1) BiodbPersistentCache.Rd:436: Lost braces
436 | \\code{TRUE}), the same size as \\code{name}, containing the contents of the
| ^
checkRd: (-1) BiodbPersistentCache.Rd:436: Lost braces
436 | \\code{TRUE}), the same size as \\code{name}, containing the contents of the
| ^
checkRd: (-1) BiodbPersistentCache.Rd:437: Lost braces
437 | files. If some file does not exist, a \\code{NULL} value is inserted inside
| ^
checkRd: (-1) BiodbPersistentCache.Rd:454: Lost braces
454 | files. It must have the same length as \\code{name}.}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:667: Lost braces
667 | \item{\code{extract.name}}{If set to \\code{TRUE}, instead of returning the file
| ^
checkRd: (-1) BiodbPersistentCache.Rd:671: Lost braces
671 | \item{\code{full.path}}{If set to \\code{TRUE}, returns full path for files.}
| ^
checkRd: (-1) BiodbPersistentCache.Rd:677: Lost braces
677 | \\code{extract.name} is set to \\code{TRUE}.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:677: Lost braces
677 | \\code{extract.name} is set to \\code{TRUE}.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:695: Lost braces
695 | \\code{BiodbConfig :isEnabled('cache.system')}.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:706: Lost braces
706 | \\code{BiodbConfig :enable('cache.system')}.
| ^
checkRd: (-1) BiodbPersistentCache.Rd:717: Lost braces
717 | \\code{BiodbConfig :disable('cache.system')}.
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MassSqliteConn 0.199 1.972 8.615
upgradeExtPkg 0.307 1.478 5.874
BiodbRequest 0.405 0.025 8.037
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/00check.log’
for details.
biodb.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL biodb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘biodb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c closeMatchPpm.cpp -o closeMatchPpm.o
closeMatchPpm.cpp: In function 'Rcpp::List closeMatchPpm(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, int, double, double)':
closeMatchPpm.cpp:251:9: warning: 'void free(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
251 | free(pidxS);
| ~~~~^~~~~~~
closeMatchPpm.cpp:238:50: note: returned from 'void* operator new [](std::size_t)'
238 | tIdxStruct *pidxS = new tIdxStruct[x.length()];
| ^
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-100-ms_matching.cpp -o test-100-ms_matching.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o biodb.so RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-biodb/00new/biodb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)
biodb.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2024-11-05 05:55:36.282][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:36.286][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:36.301][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:36.302][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:36.304][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.309][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:36.338][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.343][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:36.345][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.350][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:36.352][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:36.353][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:36.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.359][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:36.360][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:36.362][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.367][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:36.369][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:36.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.374][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:36.376][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:36.377][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:36.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.382][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:36.384][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.389][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:36.391][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:36.393][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:36.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.398][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:36.400][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:36.401][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:36.403][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:36.404][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:36.406][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:36.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.412][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:36.413][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:36.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.419][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:36.420][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:36.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.426][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:36.428][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:36.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.433][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:36.435][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:36.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.441][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:36.442][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:36.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.448][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:36.449][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:36.481][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:36.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.486][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:36.487][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:36.489][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:36.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.497][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:36.558][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.581][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:36.583][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.584][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:36.585][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.587][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.588][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.589][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.590][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:36.592][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:36.593][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.594][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:36.596][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:36.597][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.598][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.600][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:36.600][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:36.600][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:36.600][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:36.600][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:36.601][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:36.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.603][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.605][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:36.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.608][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.610][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.611][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:36.612][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:36.613][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.615][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.616][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:36.619][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.620][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:36.621][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:36.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.627][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.628][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.629][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:36.631][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:36.632][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.633][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:36.635][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:36.636][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.637][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.639][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:36.639][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:36.639][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:36.639][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:36.639][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:36.640][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:36.641][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.644][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:36.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.647][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.649][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.650][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:36.651][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:36.653][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.654][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.655][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:36.658][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.659][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:36.661][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.662][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:36.663][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.664][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.666][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.667][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.668][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:36.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:36.671][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.672][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:36.674][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:36.675][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.676][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.677][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.679][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:36.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:36.684][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.686][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.688][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.689][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:36.690][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:36.692][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.693][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.695][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:36.697][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.698][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:36.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:36.702][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.704][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.705][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.706][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.708][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:36.709][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:36.710][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.711][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:36.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:36.714][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.715][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:36.717][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.718][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:36.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.722][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:36.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:36.724][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:36.725][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:36.727][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.728][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:36.729][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:36.731][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:36.732][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:36.737][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:36.738][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:36.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:36.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:36.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:36.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:36.839][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:36.845][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:36.847][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:36.849][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:36.850][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:36.860][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:36.862][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:36.865][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:36.867][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:36.869][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:36.871][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:36.873][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:36.875][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:36.877][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:36.879][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:36.880][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:36.882][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:36.884][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:36.886][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:36.888][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:36.890][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:36.892][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:36.894][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:36.896][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:36.898][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:36.900][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:36.902][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:36.904][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:36.906][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:36.908][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:36.910][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:36.912][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:36.914][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:36.916][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:36.918][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:36.920][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:36.922][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:36.924][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:36.926][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:36.928][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:36.930][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:36.932][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:36.935][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:36.937][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:36.939][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:36.941][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:36.943][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:36.945][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:36.947][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:36.949][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:36.951][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:36.953][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:36.955][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:36.957][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:36.959][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:36.961][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:36.963][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:36.965][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:36.967][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:36.969][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:36.971][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:36.973][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:36.975][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:36.977][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:36.979][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:36.981][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:36.983][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:36.984][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:36.986][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:36.988][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:36.990][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:36.992][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:36.994][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:36.996][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:36.998][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:37.000][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:37.002][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:37.004][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:37.006][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:37.008][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:37.010][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:37.012][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:37.014][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:37.022][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:37.025][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:55:37.026][biodb::testContext]
biodb.INFO [2024-11-05 05:55:37.028][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:37.029][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2024-11-05 05:55:37.030][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:37.032][biodb::testContext]
biodb.INFO [2024-11-05 05:55:37.034][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.035][biodb::testThat] Running test function test.abstractClass.declaration (" An abstract class cannot be instantiated. ").
biodb.INFO [2024-11-05 05:55:37.036][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:37.038][biodb::testThat]
biodb.ERROR[2024-11-05 05:55:37.041][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2024-11-05 05:55:37.082][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:55:37.083][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:37.085][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:37.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:37.088][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:37.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:37.095][biodb::testContext]
biodb.INFO [2024-11-05 05:55:37.097][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:37.098][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2024-11-05 05:55:37.100][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:37.101][biodb::testContext]
biodb.INFO [2024-11-05 05:55:37.103][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.105][biodb::testThat] Running test function test_BiodbUrl (" BiodbUrl works fine. ").
biodb.INFO [2024-11-05 05:55:37.106][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:37.108][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.147][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.148][biodb::testThat] Running test function test_biodburl_encoding (" BiodbUrl encoding works correctly. ").
biodb.INFO [2024-11-05 05:55:37.149][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:37.151][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.210][biodb::testThat]
biodb.INFO [2024-11-05 05:55:37.212][biodb::testThat] Running test function test_getRCurlContent (" getRCurlContent() works fine. ").
biodb.INFO [2024-11-05 05:55:37.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:37.215][biodb::testThat]
biodb.INFO [2024-11-05 05:55:38.646][biodb::testContext]
biodb.INFO [2024-11-05 05:55:38.648][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:38.649][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2024-11-05 05:55:38.651][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:38.652][biodb::testContext]
biodb.INFO [2024-11-05 05:55:38.653][biodb::testThat]
biodb.INFO [2024-11-05 05:55:38.655][biodb::testThat] Running test function test_range (" Range class works correctly. ").
biodb.INFO [2024-11-05 05:55:38.656][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:38.657][biodb::testThat]
biodb.INFO [2024-11-05 05:55:38.682][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:38.684][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:38.689][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:38.691][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:38.692][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.697][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:38.698][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.703][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:38.705][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.710][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:38.711][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:38.713][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:38.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.718][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:38.719][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:38.721][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.726][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:38.727][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:38.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.732][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:38.733][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:38.735][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:38.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.740][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:38.742][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.747][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:38.748][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:38.749][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:38.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.754][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:38.756][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:38.757][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:38.759][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:38.760][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:38.761][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:38.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.766][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:38.768][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:38.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.773][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:38.774][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:38.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.779][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:38.780][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:38.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.785][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:38.787][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:38.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.792][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:38.793][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:38.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.798][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:38.799][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:38.804][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:38.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.810][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:38.811][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:38.812][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:38.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:38.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:38.818][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:38.821][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.822][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:38.823][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.825][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:38.826][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.828][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.829][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.830][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.832][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:38.849][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:38.850][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.851][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:38.853][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:38.854][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.855][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:38.857][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:38.857][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:38.857][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:38.857][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:38.858][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:38.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.862][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:38.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.866][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.867][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.869][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:38.870][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:38.871][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.873][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.874][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:38.877][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.878][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:38.880][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.881][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:38.882][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.884][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.885][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.886][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.888][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:38.889][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:38.891][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.892][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:38.893][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:38.895][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.896][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.898][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:38.898][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:38.898][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:38.898][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:38.898][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:38.899][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:38.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.903][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:38.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.907][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.908][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.909][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:38.911][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:38.912][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.913][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.915][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:38.918][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.919][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:38.921][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.922][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:38.923][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.925][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.926][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.928][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.929][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:38.930][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:38.932][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.933][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:38.934][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:38.936][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.937][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.938][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.940][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:38.941][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.943][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.944][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:38.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.948][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.949][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.951][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:38.952][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:38.953][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.955][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.956][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:38.959][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.960][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:38.962][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:38.964][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.967][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.968][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.970][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:38.971][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:38.972][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.974][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:38.975][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:38.976][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.978][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:38.979][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.981][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:38.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.984][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:38.986][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:38.987][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:38.988][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:38.990][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.991][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:38.992][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:38.993][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:38.995][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:38.997][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:38.998][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:38.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:39.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.114][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:39.116][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:39.118][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:39.120][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:39.123][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:39.125][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:39.127][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:39.129][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:39.131][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:39.133][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:39.135][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:39.137][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:39.139][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:39.141][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:39.143][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:39.145][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:39.146][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:39.152][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:39.154][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:39.195][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:39.198][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:39.201][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:39.203][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:39.205][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:39.206][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:39.208][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:39.210][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:39.212][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:39.214][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:39.216][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:39.218][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:39.220][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:39.222][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:39.224][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:39.226][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:39.228][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:39.230][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:39.232][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:39.234][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:39.236][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:39.238][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:39.240][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:39.242][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:39.243][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:39.245][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:39.247][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:39.249][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:39.251][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:39.253][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:39.255][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:39.257][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:39.259][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:39.261][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:39.263][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:39.265][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:39.267][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:39.269][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:39.271][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:39.273][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:39.275][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:39.277][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:39.279][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:39.281][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:39.283][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:39.285][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:39.287][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:39.289][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:39.290][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:39.292][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:39.294][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:39.296][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:39.298][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:39.300][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:39.302][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:39.304][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:39.306][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:39.308][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:39.310][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:39.312][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:39.314][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:39.316][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:39.318][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:39.319][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:39.322][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:39.324][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:55:39.325][biodb::testContext]
biodb.INFO [2024-11-05 05:55:39.326][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:39.328][biodb::testContext] Test context - Test object printing.
biodb.INFO [2024-11-05 05:55:39.329][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:39.330][biodb::testContext]
biodb.INFO [2024-11-05 05:55:39.332][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.333][biodb::testThat] Running test function test.BiodbMain.print (" BiodbMain print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:39.335][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:39.336][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.347][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.348][biodb::testThat] Running test function test.BiodbCache.print (" BiodbCache print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:39.349][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:39.350][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.369][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.370][biodb::testThat] Running test function test.BiodbConfig.print (" BiodbConfig print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:39.372][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:39.373][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.384][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.385][biodb::testThat] Running test function test.BiodbFactory.print (" BiodbFactory print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:39.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:39.388][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.401][biodb::testThat]
biodb.INFO [2024-11-05 05:55:39.402][biodb::testThat] Running test function test.BiodbEntry.print (" BiodbEntry print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:39.404][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:39.405][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:39.428][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:39.429][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:39.447][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2024-11-05 05:55:39.449][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:55:39.450][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:39.452][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:39.453][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:39.454][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2024-11-05 05:55:39.456][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.479][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.534][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:55:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.542][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.542][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.543][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.550][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.550][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.550][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.552][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:55:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.558][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.558][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.560][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:55:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.567][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.567][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.567][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.567][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.567][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.568][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.575][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.577][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.584][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.585][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:55:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.592][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.642][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name
C1 pos 112.07569 P9Z6W410 O [(M+H)-(H2O)-(NH3)]+ J114L6M62O2 146.10553 Blablaine
biodb.DEBUG[2024-11-05 05:55:39.645][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:55:39.650][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:39.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:39.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:39.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:39.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:39.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.678][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.680][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.681][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.683][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.684][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.686][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.687][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:39.689][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:55:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:39.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:39.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.033][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:40.034][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:40.035][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:40.037][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:40.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.044][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:40.046][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:40.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.050][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.051][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.055][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.057][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.060][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.062][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.064][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:40.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:40.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:40.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.076][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:40.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:40.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.082][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.083][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.087][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:40.088][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.090][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.094][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.095][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.098][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.099][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.100][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.104][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.106][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.110][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:40.111][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:40.112][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.114][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.118][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.119][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.123][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.124][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.128][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.130][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.134][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:40.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:40.395][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2024-11-05 05:55:40.413][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:40.419][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.421][biodb::testThat] Running test function test.BiodbConn.print (" BiodbConn print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:40.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.423][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:40.478][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:40.501][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2024-11-05 05:55:40.589][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.591][biodb::testThat] Running test function test.BiodbDbsInfo.print (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:40.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.594][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.613][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.614][biodb::testThat] Running test function test.BiodbEntryFields.print (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2024-11-05 05:55:40.616][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.617][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.626][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:55:40.627][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2024-11-05 05:55:40.629][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:40.630][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:40.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:40.632][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:40.639][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.641][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.642][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2024-11-05 05:55:40.643][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.645][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.646][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.648][biodb::testThat] Running test function test_convertTolToRange (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2024-11-05 05:55:40.649][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.650][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.685][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.687][biodb::testThat] Running test function test_closeMatchPpm (" closeMatchPpm() works correctly. ").
biodb.INFO [2024-11-05 05:55:40.688][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.689][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.715][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.716][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.718][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2024-11-05 05:55:40.719][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.720][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.722][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.723][biodb::testThat] Running test function test_connNameToClassPrefix (" We can convert a connector name into a class prefix. ").
biodb.INFO [2024-11-05 05:55:40.725][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.726][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.738][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.739][biodb::testThat] Running test function test_extractVersion (" We can extract the version number from a template file. ").
biodb.INFO [2024-11-05 05:55:40.741][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.742][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.758][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.760][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.761][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2024-11-05 05:55:40.763][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:40.764][biodb::testContext]
biodb.INFO [2024-11-05 05:55:40.766][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.767][biodb::testThat] Running test function test_splitVersion (" We can split version string. ").
biodb.INFO [2024-11-05 05:55:40.768][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.770][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.797][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.799][biodb::testThat] Running test function test_compareVersions (" We can compare string versions. ").
biodb.INFO [2024-11-05 05:55:40.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:40.801][biodb::testThat]
biodb.INFO [2024-11-05 05:55:40.834][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:40.837][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:40.842][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:40.843][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:40.845][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.850][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:40.852][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.857][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:40.858][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.863][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:40.864][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:40.866][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:40.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.871][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:40.872][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:40.874][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.879][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:40.880][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:40.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.885][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:40.887][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:40.888][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:40.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.893][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:40.894][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.908][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:40.910][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:40.912][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:40.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.918][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:40.919][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:40.920][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:40.922][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:40.923][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:40.925][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:40.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.930][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:40.931][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:40.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.936][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:40.938][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:40.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.943][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:40.945][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:40.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.950][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:40.952][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:40.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.957][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:40.958][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:40.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.964][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:40.965][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:40.971][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:40.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.976][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:40.978][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:40.980][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:40.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:40.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:40.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:40.985][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:40.988][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:40.990][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:40.991][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:40.993][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:40.994][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:40.996][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:40.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:40.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.000][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:41.001][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:41.003][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.004][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:41.005][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:41.007][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.008][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.009][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:41.009][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:41.009][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.009][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:41.009][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:41.011][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:41.012][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.015][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:41.016][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.018][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.019][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.020][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.022][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:41.023][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:41.025][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.026][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.028][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:41.030][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.032][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:41.033][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.035][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:41.036][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.038][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.039][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.040][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.042][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:41.043][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:41.045][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.046][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:41.048][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:41.049][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.051][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.052][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:41.052][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:41.052][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.052][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:41.052][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:41.054][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:41.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.058][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:41.059][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.061][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.062][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.063][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.065][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:41.066][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:41.067][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.069][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.071][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:41.073][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.075][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:41.076][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.078][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:41.079][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.081][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.082][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.085][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:41.087][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:41.088][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.090][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:41.091][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:41.093][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.094][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.096][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.097][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:41.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:41.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.104][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.107][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:41.109][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:41.111][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.112][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.114][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:41.117][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.118][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:41.120][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.121][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:41.123][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.124][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.126][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.127][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.129][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:41.131][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:41.132][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.133][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:41.135][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:41.136][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:41.139][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.141][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:41.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:41.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:41.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:41.149][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:41.150][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.151][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:41.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:41.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:41.155][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:41.157][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:41.159][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:41.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.276][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:41.278][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:41.280][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:41.282][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:41.284][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:41.286][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:41.288][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:41.290][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:41.292][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:41.294][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:41.296][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:41.298][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:41.300][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:41.302][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:41.304][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:41.306][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:41.308][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:41.310][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:41.312][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:41.314][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:41.316][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:41.318][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:41.320][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:41.322][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:41.324][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:41.326][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:41.328][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:41.330][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:41.332][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:41.334][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:41.336][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:41.338][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:41.340][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:41.342][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:41.344][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:41.346][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:41.348][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:41.350][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:41.352][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:41.354][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:41.356][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:41.358][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:41.360][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:41.362][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:41.364][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:41.366][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:41.368][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:41.370][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:41.372][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:41.374][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:41.376][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:41.378][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:41.380][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:41.382][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:41.384][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:41.386][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:41.389][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:41.391][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:41.393][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:41.395][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:41.396][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:41.398][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:41.400][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:41.402][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:41.404][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:41.406][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:41.408][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:41.410][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:41.412][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:41.414][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:41.416][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:41.418][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:41.420][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:41.422][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:41.424][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:41.426][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:41.428][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:41.430][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:41.432][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:41.434][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:41.436][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:41.438][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:41.440][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:41.442][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:41.445][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:55:41.454][biodb::testContext]
biodb.INFO [2024-11-05 05:55:41.456][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:41.458][biodb::testContext] Test context - Test messages.
biodb.INFO [2024-11-05 05:55:41.459][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:41.461][biodb::testContext]
biodb.INFO [2024-11-05 05:55:41.462][biodb::testThat]
biodb.INFO [2024-11-05 05:55:41.464][biodb::testThat] Running test function test.deprecatedMethods (" Deprecated methods send correct message. ").
biodb.INFO [2024-11-05 05:55:41.465][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:41.466][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:41.473][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:41.475][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:41.476][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2024-11-05 05:55:41.479][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:55:41.482][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:41.483][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:41.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:41.486][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2024-11-05 05:55:41.488][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.495][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.497][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:55:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.504][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.504][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.506][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.513][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.513][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.513][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.515][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:55:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.522][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.522][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.522][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.522][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.524][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:55:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.531][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.531][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.531][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.531][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.531][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.533][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:41.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.540][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.542][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.549][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.550][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:55:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.558][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.563][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name
C1 pos 112.07569 P9Z6W410 O [(M+H)-(H2O)-(NH3)]+ J114L6M62O2 146.10553 Blablaine
biodb.DEBUG[2024-11-05 05:55:41.565][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:55:41.567][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:41.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:41.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:41.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:41.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:41.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.580][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.582][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.583][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.585][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.586][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.588][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.589][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:41.591][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:55:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.713][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.785][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:41.786][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:41.787][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:41.789][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:41.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:41.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.795][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.797][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:41.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.800][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.801][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.802][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.806][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.808][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.811][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.812][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.813][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.816][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.817][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:41.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:41.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.823][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.829][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:41.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:41.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.834][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.836][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.840][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:41.841][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.843][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.847][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.848][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.852][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.858][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.859][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.863][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:41.865][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:41.866][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.868][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.870][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.872][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.873][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.877][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.878][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.882][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.884][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.887][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.888][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:55:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:41.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:42.081][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2024-11-05 05:55:42.206][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2024-11-05 05:55:42.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.209][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.312][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2024-11-05 05:55:42.312][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2024-11-05 05:55:42.314][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.315][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.419][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2024-11-05 05:55:42.419][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2024-11-05 05:55:42.421][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.422][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2024-11-05 05:55:42.473][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2024-11-05 05:55:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:42.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:55:42.569][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:42.575][biodb::testThat]
biodb.INFO [2024-11-05 05:55:42.576][biodb::testThat] Running test function test.default.messages (" Test what messages are printed by default. ").
biodb.INFO [2024-11-05 05:55:42.578][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:42.579][biodb::testThat]
biodb.INFO [2024-11-05 05:55:42.641][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:55:42.642][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:42.644][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.646][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:42.654][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:42.656][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:42.661][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:42.662][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:42.664][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.669][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:42.670][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.675][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:42.677][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.682][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:42.683][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:42.685][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:42.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.689][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:42.691][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:42.692][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.697][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:42.699][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:42.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.704][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:42.705][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:42.707][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:42.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.712][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:42.714][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.719][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:42.720][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:42.722][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:42.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.727][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:42.728][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:42.730][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:42.731][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:42.732][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:42.734][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:42.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.739][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:42.740][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:42.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.745][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:42.747][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:42.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.760][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:42.762][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:42.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.767][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:42.769][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:42.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.774][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:42.775][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:42.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.780][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:42.782][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:42.787][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:42.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.793][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:42.794][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:42.795][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:42.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.801][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:42.803][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.805][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:42.806][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.807][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:42.809][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.810][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.811][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.814][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:42.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:42.817][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.818][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:42.820][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:42.821][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.822][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.824][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:42.824][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:42.824][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:42.824][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:42.824][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:42.825][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:42.826][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.829][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:42.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.832][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.833][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.834][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.837][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.838][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.839][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.841][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:42.843][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.845][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:42.846][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.848][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:42.849][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.850][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.852][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.853][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.854][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:42.856][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:42.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.859][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:42.860][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:42.861][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.863][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.864][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:42.864][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:42.864][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:42.864][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:42.864][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:42.866][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:42.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.868][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.870][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:42.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.874][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.875][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.876][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.877][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.879][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.880][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.882][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:42.884][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.886][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:42.887][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.888][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:42.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.891][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.892][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.894][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.895][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:42.897][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:42.898][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.899][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:42.901][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:42.902][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.903][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.905][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.906][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:42.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.909][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.910][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:42.911][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.914][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.915][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.919][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.921][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.922][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:42.925][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.926][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:42.927][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.929][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:42.930][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.931][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.933][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.934][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.936][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:42.937][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:42.938][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.940][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:42.941][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:42.942][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.944][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:42.945][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.946][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:42.948][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.949][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.950][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:42.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:42.953][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:42.954][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:42.955][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.957][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:42.958][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:42.959][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:42.961][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:42.962][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:42.964][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:42.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:42.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:42.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:42.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:42.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.078][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:43.080][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:43.082][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:43.084][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:43.086][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:43.087][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:43.089][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:43.091][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:43.093][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:43.095][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:43.097][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:43.099][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:43.101][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:43.103][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:43.105][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:43.107][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:43.109][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:43.111][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:43.112][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:43.114][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:43.116][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:43.118][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:43.120][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:43.122][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:43.124][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:43.126][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:43.128][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:43.130][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:43.132][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:43.134][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:43.136][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:43.138][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:43.139][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:43.141][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:43.143][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:43.145][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:43.147][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:43.149][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:43.151][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:43.153][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:43.155][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:43.157][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:43.159][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:43.161][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:43.163][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:43.165][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:43.167][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:43.169][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:43.171][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:43.172][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:43.174][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:43.176][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:43.178][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:43.180][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:43.182][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:43.184][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:43.186][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:43.188][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:43.190][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:43.192][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:43.194][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:43.196][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:43.198][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:43.199][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:43.201][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:43.203][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:43.205][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:43.207][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:43.209][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:43.211][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:43.213][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:43.215][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:43.217][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:43.219][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:43.221][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:43.223][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:43.225][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:43.227][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:43.229][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:43.231][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:43.233][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:43.235][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:43.237][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:43.239][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:43.241][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:55:43.243][biodb::testContext]
biodb.INFO [2024-11-05 05:55:43.245][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:43.254][biodb::testContext] Test context - Test config.
biodb.INFO [2024-11-05 05:55:43.256][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:43.258][biodb::testContext]
biodb.INFO [2024-11-05 05:55:43.260][biodb::testThat]
biodb.INFO [2024-11-05 05:55:43.261][biodb::testThat] Running test function test.listKeys (" Keys are listed correctly. ").
biodb.INFO [2024-11-05 05:55:43.262][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:43.264][biodb::testThat]
biodb.INFO [2024-11-05 05:55:43.292][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:55:43.293][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:43.294][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.297][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:43.305][biodb::testContext]
biodb.INFO [2024-11-05 05:55:43.307][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:43.308][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2024-11-05 05:55:43.310][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:43.311][biodb::testContext]
biodb.INFO [2024-11-05 05:55:43.314][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:43.316][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:43.321][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:43.323][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:43.324][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.330][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:43.331][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.336][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:43.338][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.343][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:43.345][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:43.347][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:43.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.352][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:43.353][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:43.355][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.360][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:43.362][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:43.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.367][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:43.368][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:43.370][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:43.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.375][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:43.376][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.382][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:43.383][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:43.384][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.390][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:43.391][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:43.392][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:43.394][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:43.395][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:43.397][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:43.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.402][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:43.403][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:43.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.408][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:43.410][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:43.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.415][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:43.416][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:43.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.422][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:43.423][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:43.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.428][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:43.430][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:43.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.435][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:43.436][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:43.441][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:43.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.446][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:43.447][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:43.449][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:43.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.454][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:43.457][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.458][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:43.459][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.461][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:43.462][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.463][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.465][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.466][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.467][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:43.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:43.470][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.472][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:43.473][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:43.474][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.477][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:43.477][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:43.477][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:43.477][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:43.477][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:43.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:43.480][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:43.484][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.485][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.486][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.487][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.489][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:43.490][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:43.491][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.493][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.494][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:43.497][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.498][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:43.499][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.501][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:43.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.505][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.516][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:43.518][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:43.519][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.520][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:43.522][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:43.523][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.524][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.526][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:43.526][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:43.526][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:43.526][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:43.526][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:43.527][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:43.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.531][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:43.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.535][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.536][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.537][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:43.539][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:43.540][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.541][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.543][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:43.545][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.547][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:43.548][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:43.551][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.552][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.554][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.555][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.556][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:43.558][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:43.559][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.560][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:43.562][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:43.563][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.565][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.566][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.567][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:43.569][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.571][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:43.573][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.574][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.575][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.576][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.578][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:43.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:43.580][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.582][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.584][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:43.586][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.587][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:43.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:43.592][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.593][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.594][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.596][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.597][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:43.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:43.600][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.602][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:43.603][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:43.604][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.606][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:43.607][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.608][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:43.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.612][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:43.614][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:43.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:43.616][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:43.617][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:43.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:43.621][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:43.623][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:43.625][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:43.626][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.732][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:43.734][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:43.736][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:43.738][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:43.740][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:43.742][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:43.744][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:43.746][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:43.756][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:43.758][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:43.761][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:43.763][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:43.765][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:43.767][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:43.769][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:43.771][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:43.773][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:43.775][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:43.777][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:43.779][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:43.781][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:43.783][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:43.785][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:43.787][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:43.789][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:43.791][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:43.793][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:43.795][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:43.797][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:43.799][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:43.801][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:43.803][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:43.805][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:43.807][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:43.809][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:43.811][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:43.813][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:43.815][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:43.817][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:43.819][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:43.821][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:43.823][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:43.825][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:43.827][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:43.829][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:43.831][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:43.833][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:43.835][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:43.837][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:43.839][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:43.841][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:43.843][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:43.845][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:43.847][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:43.849][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:43.851][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:43.853][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:43.854][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:43.856][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:43.858][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:43.860][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:43.862][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:43.864][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:43.866][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:43.868][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:43.870][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:43.872][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:43.874][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:43.876][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:43.878][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:43.880][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:43.882][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:43.884][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:43.886][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:43.888][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:43.890][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:43.892][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:43.894][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:43.896][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:43.898][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:43.900][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:43.902][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:43.904][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:43.906][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:43.908][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:43.909][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:55:43.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:43.917][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:43.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:43.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:43.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:43.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:43.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:43.926][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2024-11-05 05:55:43.992][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:43.994][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2024-11-05 05:55:43.996][biodb::testThat]
biodb.INFO [2024-11-05 05:55:43.997][biodb::testThat] Running test function test_cacheFiles (" We can list cache files. ").
biodb.INFO [2024-11-05 05:55:43.998][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:44.000][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.002][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:44.005][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.012][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.014][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.021][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.021][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.022][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.029][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.029][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.029][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.031][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.039][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.039][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.039][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.039][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.040][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.048][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.048][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.048][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.048][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.048][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.050][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:55:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.057][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.067][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:55:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.074][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.076][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:55:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.083][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2024-11-05 05:55:44.092][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:44.093][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e using pattern ^.*\.tsv$.
biodb.DEBUG[2024-11-05 05:55:44.098][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:44.100][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:44.102][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:44.104][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:44.106][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:44.107][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:44.109][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:44.110][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:44.111][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:44.113][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:44.121][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.TRACE[2024-11-05 05:55:44.143][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1456.tsv"
biodb.DEBUG[2024-11-05 05:55:44.158][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:44.159][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:44.164][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:44.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:44.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:44.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:44.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:44.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.177][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.178][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.180][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.181][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.183][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.184][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.186][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:44.188][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:55:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.235][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:44.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:44.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:44.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:44.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:44.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:44.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:44.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:44.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:44.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:44.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:44.689][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2024-11-05 05:55:44.711][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e using pattern ^.*\.tsv$.
biodb.DEBUG[2024-11-05 05:55:44.721][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e using pattern ^.*\.tsv$.
biodb.DEBUG[2024-11-05 05:55:44.723][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-b51027d8b03dcf9cbf719d053509462e using pattern ^(.*)\.tsv$
biodb.DEBUG[2024-11-05 05:55:44.724][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2024-11-05 05:55:44.735][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.736][biodb::testThat] Running test function test_deleteFilesForWrongCacheId (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2024-11-05 05:55:44.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:44.739][biodb::testThat]
biodb.WARN [2024-11-05 05:55:44.742][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2024-11-05 05:55:44.750][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.751][biodb::testThat] Running test function test_filesExistForConn (" We detect if cache files exist for a connector ").
biodb.INFO [2024-11-05 05:55:44.752][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:44.754][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.762][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:44.764][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:44.774][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.775][biodb::testThat] Running test function test_noFilesExist (" No cache files exist for unknown cache ID. ").
biodb.INFO [2024-11-05 05:55:44.776][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:44.778][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.780][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2024-11-05 05:55:44.790][biodb::testThat]
biodb.INFO [2024-11-05 05:55:44.791][biodb::testThat] Running test function test_usedCacheIds (" We can a list of used cache IDs ").
biodb.INFO [2024-11-05 05:55:44.793][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:44.794][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:44.878][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:44.946][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:44.970][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:44.972][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:44.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:44.975][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:44.976][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:44.977][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:44.979][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:44.980][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:44.988][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.TRACE[2024-11-05 05:55:45.007][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1456.tsv"
biodb.DEBUG[2024-11-05 05:55:45.010][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:45.043][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:45.044][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:45.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:45.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:45.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:45.515][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:45.534][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:45.554][biodb::testThat]
biodb.INFO [2024-11-05 05:55:45.555][biodb::testThat] Running test function test_deleteAllFiles (" We can delete all cache files for a connector ").
biodb.INFO [2024-11-05 05:55:45.557][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:45.558][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:45.562][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:45.563][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:45.565][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2024-11-05 05:55:45.567][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.TRACE[2024-11-05 05:55:45.568][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:45.570][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:45.571][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:45.573][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:45.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:45.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:45.577][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:45.585][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.TRACE[2024-11-05 05:55:45.589][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1456.tsv"
biodb.DEBUG[2024-11-05 05:55:45.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:45.592][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:45.594][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:45.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:45.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:45.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:45.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:45.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:45.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:45.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:45.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:46.078][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:46.086][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:46.088][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:46.095][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:46.096][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:46.098][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:46.100][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:46.101][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:46.103][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:46.104][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:46.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:46.107][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:46.108][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:46.117][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.TRACE[2024-11-05 05:55:46.120][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1456.tsv"
biodb.DEBUG[2024-11-05 05:55:46.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:46.124][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:46.125][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:46.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:46.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:46.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:46.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:46.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:46.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:46.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:46.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:46.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:46.596][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:46.632][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:46.634][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:46.643][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:55:46.645][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2024-11-05 05:55:46.646][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:46.647][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.649][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:46.653][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:46.655][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:46.660][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:46.661][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:46.663][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.668][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:46.669][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.674][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:46.675][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.680][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:46.681][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:46.683][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:46.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.687][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:46.689][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:46.690][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.695][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:46.696][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:46.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.701][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:46.702][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:46.704][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:46.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.708][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:46.710][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.714][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:46.716][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:46.717][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:46.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.722][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:46.723][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:46.724][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:46.725][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:46.727][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:46.728][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:46.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.733][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:46.734][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:46.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.739][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:46.740][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:46.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.753][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:46.755][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:46.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.761][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:46.762][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:46.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.767][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:46.769][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:46.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.773][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:46.775][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:46.780][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:46.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.785][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:46.786][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:46.788][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:46.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.793][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:46.795][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.796][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:46.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:46.800][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.802][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.803][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.804][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.805][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:46.807][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:46.808][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.809][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:46.811][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:46.812][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.813][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.815][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:46.815][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:46.815][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:46.815][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:46.815][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:46.816][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:46.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.818][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.820][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:46.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.823][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.825][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.826][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:46.827][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:46.829][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.830][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.832][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:46.835][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.836][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:46.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.839][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:46.840][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.842][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.843][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.846][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:46.847][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:46.849][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.850][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:46.851][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:46.853][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.854][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.855][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:46.855][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:46.855][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:46.855][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:46.855][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:46.857][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:46.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.861][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:46.862][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.865][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.866][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.867][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:46.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:46.870][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.871][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.873][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:46.876][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.877][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:46.878][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.880][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:46.881][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.883][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.884][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.885][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.887][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:46.888][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:46.889][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.891][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:46.892][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:46.894][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.895][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.896][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.898][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:46.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.901][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:46.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.904][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.905][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.907][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.908][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:46.909][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:46.910][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.912][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.913][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:46.916][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.917][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:46.919][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.920][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:46.921][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.922][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.924][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.925][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.926][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:46.928][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:46.929][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.930][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:46.932][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:46.933][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.934][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:46.936][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.937][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:46.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.941][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:46.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:46.943][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:46.945][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:46.946][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.947][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:46.949][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:46.950][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:46.951][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:46.953][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:46.954][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:46.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:46.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:46.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:46.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:46.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.066][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:47.068][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:47.070][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:47.072][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:47.075][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:47.077][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:47.079][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:47.081][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:47.083][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:47.085][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:47.087][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:47.089][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:47.091][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:47.093][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:47.095][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:47.097][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:47.099][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:47.101][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:47.103][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:47.105][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:47.107][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:47.109][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:47.111][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:47.113][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:47.115][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:47.117][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:47.119][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:47.121][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:47.123][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:47.125][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:47.127][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:47.129][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:47.131][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:47.133][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:47.135][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:47.137][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:47.139][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:47.141][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:47.143][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:47.145][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:47.147][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:47.149][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:47.151][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:47.154][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:47.156][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:47.157][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:47.160][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:47.162][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:47.164][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:47.166][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:47.168][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:47.170][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:47.172][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:47.174][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:47.176][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:47.178][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:47.180][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:47.182][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:47.184][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:47.186][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:47.188][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:47.190][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:47.193][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:47.195][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:47.197][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:47.199][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:47.201][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:47.203][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:47.205][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:47.207][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:47.209][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:47.211][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:47.213][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:47.215][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:47.217][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:47.219][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:47.221][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:47.231][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:47.234][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:47.236][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:47.238][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:47.240][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:47.242][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:47.245][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:47.247][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:47.248][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:55:47.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.257][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2024-11-05 05:55:47.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:47.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:47.270][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2024-11-05 05:55:47.275][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:47.277][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2024-11-05 05:55:47.279][biodb::testThat]
biodb.INFO [2024-11-05 05:55:47.280][biodb::testThat] Running test function test_cacheFiles (" We can list cache files. ").
biodb.INFO [2024-11-05 05:55:47.282][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:47.283][biodb::testThat]
biodb.INFO [2024-11-05 05:55:47.307][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:47.310][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.318][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.320][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:47.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.328][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.328][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.329][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.337][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.337][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.337][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.339][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.346][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.346][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.346][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.346][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.348][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.355][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.355][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.355][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.355][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.355][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.357][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:55:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.364][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.366][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:55:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.373][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.375][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:55:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.382][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.395][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:47.397][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:47.399][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:47.401][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:47.402][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:47.404][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:47.405][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:47.407][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:47.408][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:47.409][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:47.418][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.INFO [2024-11-05 05:55:47.421][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:47.800][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:47.802][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:47.804][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:47.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:47.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.817][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.818][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.820][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.821][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.823][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.824][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.826][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:47.828][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:55:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:47.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:47.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:47.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:47.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:47.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:47.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:47.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:48.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:48.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:48.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:48.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:48.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:48.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:48.298][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2024-11-05 05:55:48.608][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-b51027d8b03dcf9cbf719d053509462e using pattern ^(.*)\.tsv$
biodb.DEBUG[2024-11-05 05:55:48.609][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2024-11-05 05:55:48.620][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.621][biodb::testThat] Running test function test_deleteFilesForWrongCacheId (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2024-11-05 05:55:48.622][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:48.624][biodb::testThat]
biodb.WARN [2024-11-05 05:55:48.627][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2024-11-05 05:55:48.634][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.635][biodb::testThat] Running test function test_filesExistForConn (" We detect if cache files exist for a connector ").
biodb.INFO [2024-11-05 05:55:48.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:48.638][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.795][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:48.805][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.807][biodb::testThat] Running test function test_noFilesExist (" No cache files exist for unknown cache ID. ").
biodb.INFO [2024-11-05 05:55:48.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:48.809][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.820][biodb::testThat]
biodb.INFO [2024-11-05 05:55:48.821][biodb::testThat] Running test function test_usedCacheIds (" We can a list of used cache IDs ").
biodb.INFO [2024-11-05 05:55:48.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:48.824][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:48.828][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:48.829][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:48.832][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:48.833][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:48.835][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:48.836][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:48.837][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:48.839][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:48.840][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:48.841][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:48.850][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.INFO [2024-11-05 05:55:48.853][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:49.117][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:49.119][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:49.121][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:49.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:49.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:49.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:49.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:49.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:49.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:49.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:49.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:49.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:49.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:49.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:49.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:49.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:49.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:49.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:49.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:49.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:49.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:49.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:49.625][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:49.640][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:49.652][biodb::testThat]
biodb.INFO [2024-11-05 05:55:49.653][biodb::testThat] Running test function test_deleteAllFiles (" We can delete all cache files for a connector ").
biodb.INFO [2024-11-05 05:55:49.655][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:49.656][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:49.660][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:49.662][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:49.664][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:49.666][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:49.667][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:49.669][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:49.670][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:49.671][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:49.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:49.674][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:49.683][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.INFO [2024-11-05 05:55:49.686][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:49.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:49.952][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:49.954][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:49.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:49.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:49.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:49.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:49.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:49.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:49.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:50.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:50.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:50.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:50.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:50.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:50.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:50.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:50.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:50.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:50.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:50.452][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:50.617][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:50.625][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2024-11-05 05:55:50.627][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:55:50.629][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2024-11-05 05:55:50.631][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:55:50.632][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:55:50.634][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:55:50.635][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:55:50.637][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:50.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:50.639][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2024-11-05 05:55:50.648][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.INFO [2024-11-05 05:55:50.651][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.DEBUG[2024-11-05 05:55:50.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:55:50.893][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:50.894][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:55:50.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:50.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:50.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:50.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:50.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:51.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:51.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:51.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:51.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:55:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:55:51.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:55:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:55:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:51.375][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2024-11-05 05:55:51.563][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.INFO [2024-11-05 05:55:51.574][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:55:51.576][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2024-11-05 05:55:51.577][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:55:51.579][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.581][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:55:51.592][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:55:51.595][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:55:51.600][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:51.601][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:55:51.603][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.608][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:55:51.610][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.615][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:55:51.616][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.622][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:55:51.623][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:55:51.625][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:55:51.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.630][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:55:51.631][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:55:51.633][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.638][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:55:51.640][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:55:51.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.645][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:55:51.646][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:55:51.648][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:55:51.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.653][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:55:51.654][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.660][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:55:51.661][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:55:51.663][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:55:51.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.668][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:51.669][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:55:51.671][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:55:51.672][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:55:51.674][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:55:51.675][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:55:51.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.680][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:55:51.682][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:55:51.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.687][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:55:51.689][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:55:51.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.694][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:55:51.696][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:55:51.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.701][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:55:51.703][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:55:51.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.708][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:55:51.709][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:55:51.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.715][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:55:51.716][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:55:51.721][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:55:51.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.727][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:55:51.728][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:55:51.730][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:55:51.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.735][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:55:51.738][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.739][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:55:51.740][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.751][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:51.753][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.755][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.756][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.758][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.760][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:51.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:51.763][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.764][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:55:51.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:51.768][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.769][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.771][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:51.771][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:51.771][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:51.771][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:51.771][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:51.772][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:51.774][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.775][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.776][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:51.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.781][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.782][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.784][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:51.785][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:51.786][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.788][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.790][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:55:51.792][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.794][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:51.795][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.797][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:51.798][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.799][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.801][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.802][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.804][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:51.805][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:51.807][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.808][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:55:51.810][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:51.811][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.813][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.814][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:55:51.814][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:51.814][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:55:51.814][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:55:51.814][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:55:51.816][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:51.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.818][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.820][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:51.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.825][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.827][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:51.828][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:51.829][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.831][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.833][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:51.835][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.837][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:55:51.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.840][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:51.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.842][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.844][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.847][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:55:51.848][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:51.850][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.851][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:55:51.852][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:51.854][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.855][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.857][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.858][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:51.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.862][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:51.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.866][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.868][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.869][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:51.871][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:51.872][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.873][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.875][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:55:51.878][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.879][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:55:51.881][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.882][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:55:51.883][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.885][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.886][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.888][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.889][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:55:51.891][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:55:51.892][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.893][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:55:51.895][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:55:51.896][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.898][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:55:51.899][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.901][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:55:51.902][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.903][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.905][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:55:51.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:55:51.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:55:51.909][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:55:51.910][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.912][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:55:51.913][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:55:51.914][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:55:51.916][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:55:51.918][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:55:51.919][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:51.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:51.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:51.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:51.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:51.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:55:52.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.040][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:55:52.042][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:55:52.044][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:55:52.046][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:55:52.048][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:55:52.050][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:55:52.053][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:52.055][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:52.057][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:55:52.059][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:55:52.061][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:55:52.063][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:55:52.065][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:55:52.067][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:55:52.069][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:55:52.071][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:55:52.073][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:55:52.076][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:55:52.078][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:55:52.080][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:55:52.082][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:55:52.084][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:55:52.086][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:55:52.088][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:55:52.090][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:55:52.092][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:55:52.095][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:55:52.097][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:55:52.099][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:55:52.101][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:55:52.103][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:55:52.105][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:55:52.107][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:55:52.109][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:55:52.111][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:55:52.113][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:55:52.115][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:55:52.117][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:55:52.120][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:55:52.122][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:55:52.124][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:55:52.126][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:55:52.128][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:55:52.130][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:55:52.132][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:55:52.134][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:55:52.136][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:55:52.138][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:55:52.140][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:55:52.142][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:55:52.144][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:55:52.146][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:55:52.148][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:55:52.151][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:55:52.153][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:55:52.155][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:55:52.157][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:55:52.159][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:55:52.161][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:55:52.163][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:55:52.165][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:55:52.167][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:55:52.169][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:55:52.180][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:55:52.183][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:55:52.185][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:55:52.187][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:55:52.190][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:55:52.192][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:55:52.195][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:55:52.197][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:55:52.199][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:55:52.201][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:55:52.204][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:55:52.206][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:55:52.208][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:55:52.210][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:55:52.212][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:55:52.214][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:55:52.217][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:55:52.219][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:55:52.221][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:55:52.223][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:55:52.225][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:55:52.227][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:55:52.229][biodb::testContext]
biodb.INFO [2024-11-05 05:55:52.230][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:52.232][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2024-11-05 05:55:52.233][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:55:52.234][biodb::testContext]
biodb.INFO [2024-11-05 05:55:52.236][biodb::testThat]
biodb.INFO [2024-11-05 05:55:52.238][biodb::testThat] Running test function test.convertEntryIdFieldToDbClass (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2024-11-05 05:55:52.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:52.240][biodb::testThat]
biodb.INFO [2024-11-05 05:55:52.265][biodb::testThat]
biodb.INFO [2024-11-05 05:55:52.267][biodb::testThat] Running test function test.collapseRows (" collapseRows() works correctly. ").
biodb.INFO [2024-11-05 05:55:52.268][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:52.269][biodb::testThat]
biodb.INFO [2024-11-05 05:55:52.350][biodb::testThat]
biodb.INFO [2024-11-05 05:55:52.352][biodb::testThat] Running test function test.entriesToDataframe (" entriesToDataframe() works correctly. ").
biodb.INFO [2024-11-05 05:55:52.353][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:52.354][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:52.360][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:52.361][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:52.365][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:52.373][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.375][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:52.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:52.395][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:55:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:52.403][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.403][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:52.403][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:52.408][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2024-11-05 05:55:52.411][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-05 05:55:52.414][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:52.415][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:52.417][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:52.418][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2024-11-05 05:55:52.425][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 80
biodb.DEBUG[2024-11-05 05:55:52.427][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:52.429][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:52.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:52.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:52.441][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.441][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:52.441][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:52.442][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.442][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:52.442][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:52.444][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:52.444][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:52.444][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:55:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.522][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.565][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.566][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:52.568][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:52.569][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:52.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.576][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.582][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.584][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.588][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.589][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.591][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:52.592][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:52.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:52.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:52.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.819][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.821][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:52.822][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:52.824][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:52.825][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.837][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.839][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.843][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.844][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:52.846][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:52.847][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:52.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:52.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:52.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:52.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:52.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:52.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.051][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:53.052][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:53.053][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.055][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.056][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.067][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:53.068][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.071][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.072][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:53.074][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:53.075][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:53.077][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:53.190][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2024-11-05 05:55:53.242][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:53.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.310][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.311][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.315][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.316][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.327][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.342][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.349][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2024-11-05 05:55:53.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.384][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.385][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.389][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.395][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.400][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.402][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.417][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2024-11-05 05:55:53.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.456][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.457][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.461][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.474][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.476][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.477][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.482][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.483][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2024-11-05 05:55:53.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:53.504][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:53.509][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:53.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.563][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.564][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.568][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.575][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.581][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.582][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.589][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2024-11-05 05:55:53.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.639][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.641][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.645][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.659][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.660][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.667][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2024-11-05 05:55:53.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.706][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.707][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.712][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.713][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.724][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.726][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2024-11-05 05:55:53.727][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.733][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2024-11-05 05:55:53.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2024-11-05 05:55:53.755][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:53.756][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:53.760][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:53.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.791][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.792][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.796][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.801][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.827][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.829][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.831][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.836][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.842][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2024-11-05 05:55:53.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.910][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.911][private$selectFields]
biodb.TRACE[2024-11-05 05:55:53.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:53.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:53.915][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.916][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.925][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.927][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.937][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.938][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:53.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.945][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.950][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2024-11-05 05:55:53.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:53.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:53.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:53.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:53.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.014][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:54.016][private$selectFields]
biodb.TRACE[2024-11-05 05:55:54.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.029][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:54.030][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.037][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.048][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.054][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:54.055][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:54.056][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.067][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2024-11-05 05:55:54.104][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:54.106][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:54.110][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:54.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:54.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:54.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:54.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:54.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.129][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.131][private$selectFields]
biodb.TRACE[2024-11-05 05:55:54.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.134][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.136][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.137][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.141][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.142][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.144][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.145][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.149][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2024-11-05 05:55:54.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:54.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:54.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:54.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:54.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.194][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.195][private$selectFields]
biodb.TRACE[2024-11-05 05:55:54.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.199][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.200][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.202][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.205][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.207][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.208][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.209][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.213][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2024-11-05 05:55:54.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:54.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:54.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:54.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:54.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.261][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.262][private$selectFields]
biodb.TRACE[2024-11-05 05:55:54.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.266][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.267][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.269][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.272][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.274][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:54.275][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.277][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.280][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:54.282][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2024-11-05 05:55:54.300][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:54.301][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:55:54.305][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:54.311][biodb::testThat]
biodb.INFO [2024-11-05 05:55:54.312][biodb::testThat] Running test function test.entriesToDataframe.listOfListInput (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2024-11-05 05:55:54.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:54.315][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:54.320][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:54.322][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:54.323][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:54.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:54.330][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.332][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:54.339][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.339][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:54.341][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:55:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:54.348][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.348][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:54.348][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:54.350][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2024-11-05 05:55:54.352][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-05 05:55:54.354][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:54.355][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:54.356][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:54.358][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2024-11-05 05:55:54.364][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 80
biodb.DEBUG[2024-11-05 05:55:54.366][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:54.367][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:54.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:54.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:54.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:54.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:54.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:54.379][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.379][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:54.379][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:54.381][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.381][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:54.381][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:54.382][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:54.382][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:54.382][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:55:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.739][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.740][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:54.741][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.743][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.744][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.749][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.755][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.756][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.760][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.761][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.763][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:54.764][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:54.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:54.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:54.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:54.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:54.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.880][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:54.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.944][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.945][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:54.947][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:54.948][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:54.949][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:54.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:54.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:54.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.959][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.961][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.962][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.966][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.968][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:54.969][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:54.971][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:54.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.168][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.169][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:55.170][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.171][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:55.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.177][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.178][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.183][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.184][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.188][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.190][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.191][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:55.192][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.301][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2024-11-05 05:55:55.303][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:55.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:55.312][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:55.313][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:55.314][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:55.316][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:55.319][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:55.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:55.328][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:55.330][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:55.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:55.338][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:55.340][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:55.341][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:55.343][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:55.347][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:55.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.363][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.379][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.380][private$selectFields]
biodb.TRACE[2024-11-05 05:55:55.382][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.384][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:55:55.386][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.391][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.395][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.397][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.398][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.413][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.414][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.418][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.420][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.421][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.425][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.427][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.432][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.434][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.438][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:55:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A3, C6H8O7, 100;110;120].
biodb.DEBUG[2024-11-05 05:55:55.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:55.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:55.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:55.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:55.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.524][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.526][private$selectFields]
biodb.TRACE[2024-11-05 05:55:55.527][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.530][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:55:55.531][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.537][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.542][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.544][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.559][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.560][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.564][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.566][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.572][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.578][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.579][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.584][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:55:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A1, C3H10N2, 80].
biodb.TRACE[2024-11-05 05:55:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.672][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:55.674][private$selectFields]
biodb.TRACE[2024-11-05 05:55:55.675][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:55.678][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:55:55.679][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.685][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.689][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.690][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.692][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.701][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.707][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.708][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.712][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.714][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:55:55.715][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.726][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.728][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.732][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:55:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:55.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A2, C6H12O6, 90].
biodb.DEBUG[2024-11-05 05:55:55.789][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:55.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A1|A2, C3H10N2|C6H12O6, 80|90].
biodb.DEBUG[2024-11-05 05:55:55.793][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:55.795][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:55:55.799][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:55.805][biodb::testThat]
biodb.INFO [2024-11-05 05:55:55.806][biodb::testThat] Running test function test.entriesToDataframe.noPeaksDuplication (" entriesToDataframe() does not duplicate peaks. ").
biodb.INFO [2024-11-05 05:55:55.807][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:55.809][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:55.815][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:55.816][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:55:55.820][private$loadEntries] Creating entries from ids [2]: "AU200952, AU200953".
biodb.DEBUG[2024-11-05 05:55:55.821][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:55:55.823][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:55:55.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:55.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:55.828][private$doGetEntryContentFromDb] Entry id: AU200952, AU200953
biodb.INFO [2024-11-05 05:55:55.829][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:55:55.835][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:55.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:55.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.842][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.844][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:55:55.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:55.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.851][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.851][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.853][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:55.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:55.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.861][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.861][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.861][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.863][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:55:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:55.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.877][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.877][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.877][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.877][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.879][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:55.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.886][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.886][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.886][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.886][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.888][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:55.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:55.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.897][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2024-11-05 05:55:55.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.904][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.906][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2024-11-05 05:55:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.913][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.915][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:55.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.923][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.925][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:55:55.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:55.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:55.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.932][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.934][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2024-11-05 05:55:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:55:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:55:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.942][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.944][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2024-11-05 05:55:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:55:55.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:55:55.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.951][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.953][self$setField] Set field cas.id to column(s) cas.id.
biodb.TRACE[2024-11-05 05:55:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:55:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:55:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.961][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:55.963][self$setField] Set field chebi.id to column(s) chebi.id.
biodb.TRACE[2024-11-05 05:55:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:55:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:55:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:55.970][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:55.972][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:55.979][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:55.981][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:55:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:55.988][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:55.990][self$setField] Set field peak.mzexp to column(s) peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:55.997][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:55.999][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.006][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.008][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.015][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.017][self$setField] Set field peak.formula to column(s) peak.formula.
biodb.TRACE[2024-11-05 05:55:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.024][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.026][self$setField] Set field msprecannot to column(s) msprecannot.
biodb.TRACE[2024-11-05 05:55:56.027][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.033][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.035][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:55:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.042][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.044][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:55:56.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.065][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level peak.mzexp peak.intensity chrom.rt.unit peak.formula msprecannot msprecmz peak.attr
AU200952 NA NA neg 161.0246 100 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 6180 s C7H4F3O- [M-H]- 161.022 [M-H]-
AU200952 NA NA neg 141.0184 22.32232 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 1384 s C7H3F2O- [M-H]- 161.022 NA
AU200952 NA NA neg 121.0113 19.01902 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 1180 s C7H2FO- [M-H]- 161.022 NA
AU200952 NA NA neg 162.0282 6.206206 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 388 s C6[13]CH4F3O- [M-H]- 161.022 NA
biodb.DEBUG[2024-11-05 05:55:56.067][self$createEntryFromContent] Creating Mass spectra CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:55:56.069][self$createEntryFromContent] Parsing 2 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:56.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:56.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:56.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:56.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:56.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.085][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.087][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.089][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.091][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.092][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.094][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.097][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.099][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.101][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.103][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.104][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.116][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.118][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.120][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.122][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.126][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.127][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.129][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.131][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:56.133][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.TRACE[2024-11-05 05:55:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:56.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:56.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:55:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:55:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:55:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:55:56.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:55:56.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:55:56.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:55:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:55:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:56.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.313][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.319][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.331][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.428][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:56.430][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:56.431][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:56.432][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:56.434][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.440][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.441][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.445][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.447][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.451][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.452][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.456][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:56.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:56.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.462][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.463][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.468][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.469][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.473][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.475][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.479][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.480][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.484][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.486][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.490][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.491][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.495][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.497][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.499][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.501][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.502][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.506][private$selectFields] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:56.508][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.509][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.513][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.515][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.519][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.520][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.524][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.526][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.530][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.532][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.536][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.537][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.541][private$selectFields] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:56.543][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:55:56.544][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.546][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.548][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.550][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.551][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.555][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.557][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.561][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.562][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.566][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.568][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.572][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.573][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.578][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:56.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:56.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:56.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:56.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:56.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:55:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:55:56.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:55:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:55:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:55:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:55:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:55:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:55:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:55:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:55:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.865][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:55:56.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:55:56.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:55:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:55:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:55:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.944][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.951][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:56.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:57.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.065][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:57.066][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:57.068][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:57.069][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:57.070][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.076][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.077][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.081][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.083][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.087][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.088][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.100][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.105][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.107][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.109][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.110][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.112][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.116][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.117][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.121][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.122][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.126][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.127][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.131][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.132][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.136][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.137][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.141][private$selectFields] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:55:57.143][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.144][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.148][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.149][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.153][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.154][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.158][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.160][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.163][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.165][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.169][private$selectFields] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:55:57.170][private$organizeFieldsByGroups] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:55:57.171][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.173][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.176][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.178][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.182][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.183][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.187][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.188][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.192][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.193][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.197][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:57.390][self$createEntryFromContent] Accession numbers: AU200952, AU200953.
biodb.DEBUG[2024-11-05 05:55:57.392][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:57.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:57.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:57.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:57.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:57.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.415][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:57.416][private$selectFields]
biodb.TRACE[2024-11-05 05:55:57.417][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:57.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:57.420][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.422][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.427][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.429][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.433][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.435][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.439][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.440][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.445][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.450][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.452][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.456][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.458][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.462][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.463][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.467][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.469][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.473][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.475][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.479][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.480][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.485][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.486][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.491][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.492][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.497][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.498][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.502][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.504][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.511][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.513][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.517][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.519][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.523][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.525][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.530][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.536][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.537][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.541][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.543][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.547][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.549][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.553][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.555][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.559][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.560][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.565][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.566][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.570][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.572][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.576][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.578][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.589][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.591][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "ms.level", "chrom.rt.unit", "msprecannot", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:55:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.827][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.857][private$entriesToListOfDataframes] Entry converted to data frame: [4, 14]: [accession, ms.mode, formula, ms.level, chrom.rt.unit, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...].
biodb.DEBUG[2024-11-05 05:55:57.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:57.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:57.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:57.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:57.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.879][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:57.880][private$selectFields]
biodb.TRACE[2024-11-05 05:55:57.882][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:57.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:57.885][private$selectFields] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.891][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.893][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.895][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.899][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.901][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.905][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.906][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.909][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.910][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.914][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.916][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.917][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.922][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.923][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:57.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.927][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.929][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:57.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.933][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.934][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:57.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.938][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.940][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:57.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.944][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.946][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:57.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.950][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.951][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:57.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.955][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.957][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:57.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.961][private$selectFields] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.963][private$organizeFieldsByGroups] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:55:57.964][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:57.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:57.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.970][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.972][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:57.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.976][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.977][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:57.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.982][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.983][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:57.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.987][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:57.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:57.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.993][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.995][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:57.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:57.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:57.999][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.001][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.005][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.006][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.011][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.013][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.017][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.019][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.023][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.025][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.029][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.030][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.034][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.036][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.040][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "ms.level", "chrom.rt.unit", "msprecannot", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.mz"))"
biodb.TRACE[2024-11-05 05:55:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:55:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:55:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:55:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:55:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:55:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:55:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.237][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:55:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.256][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.286][private$entriesToListOfDataframes] Entry converted to data frame: [2, 13]: [accession, ms.mode, formula, ms.level, chrom.rt.unit, ...] [AU200953, neg, C7H5F3O, 2, s, ...] [AU200953, neg, C7H5F3O, 2, s, ...].
biodb.DEBUG[2024-11-05 05:55:58.288][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:58.289][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:55:58.298][self$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:58.303][biodb::testThat]
biodb.INFO [2024-11-05 05:55:58.305][biodb::testThat] Running test function test.entryIdsToDataframe (" entryIdsToDataframe() works correctly. ").
biodb.INFO [2024-11-05 05:55:58.306][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:58.308][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:58.313][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:58.315][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:58.319][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:58.326][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.328][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:58.336][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.336][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:58.337][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:55:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:58.345][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.345][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:58.345][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:58.348][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2024-11-05 05:55:58.350][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-05 05:55:58.352][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:58.353][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:58.354][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:58.356][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2024-11-05 05:55:58.362][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 80
biodb.DEBUG[2024-11-05 05:55:58.364][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:55:58.366][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:58.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:58.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:58.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:58.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:58.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:58.379][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.379][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:58.379][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:58.381][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.381][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:58.381][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:58.383][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:58.383][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:58.383][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:55:58.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.505][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.507][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:58.508][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:58.509][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:58.511][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.515][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.521][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.522][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.524][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.528][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.529][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.531][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:58.532][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:58.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:58.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:58.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:58.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:58.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.741][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.743][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:58.744][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:58.746][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:58.747][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.752][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.753][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.757][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.759][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.760][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.763][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.765][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.766][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.768][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:58.769][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:58.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:58.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:58.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:58.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:58.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:58.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:58.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.950][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.968][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.969][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:58.970][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:58.972][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:58.973][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:58.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:58.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.980][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:58.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.986][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.988][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:58.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:58.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:58.992][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.993][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:58.994][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:58.996][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.021][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:59.123][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2024-11-05 05:55:59.130][self$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:59.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.169][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.170][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.174][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.176][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.181][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.192][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.198][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.199][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.207][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.212][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2024-11-05 05:55:59.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.283][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.285][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.289][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.291][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.297][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.302][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.308][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.314][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.316][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.317][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.323][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.329][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2024-11-05 05:55:59.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.399][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.400][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.404][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.406][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.412][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.418][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.424][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.430][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.431][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2024-11-05 05:55:59.432][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.444][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2024-11-05 05:55:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2024-11-05 05:55:59.482][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:59.483][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:59.488][self$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:59.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.497][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.507][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.509][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.513][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.514][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.515][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.519][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.521][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.525][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.526][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.527][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.529][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.533][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:59.534][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.540][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2024-11-05 05:55:59.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.570][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.571][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.575][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.577][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.578][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.582][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.584][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.588][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.590][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.598][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.600][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.603][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.604][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:59.605][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2024-11-05 05:55:59.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:55:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.641][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.642][private$selectFields]
biodb.TRACE[2024-11-05 05:55:59.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.646][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.647][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.649][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.653][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.654][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.658][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.660][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2024-11-05 05:55:59.661][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.663][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.667][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2024-11-05 05:55:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.679][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2024-11-05 05:55:59.687][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:59.688][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:55:59.692][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:55:59.698][biodb::testThat]
biodb.INFO [2024-11-05 05:55:59.699][biodb::testThat] Running test function test.entryIdsToDataframe.listOfListInput (" entryIdsToDataframe() handles list of list in input. ").
biodb.INFO [2024-11-05 05:55:59.701][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:55:59.702][biodb::testThat]
biodb.DEBUG[2024-11-05 05:55:59.708][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:55:59.709][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:55:59.711][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:55:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:59.719][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.721][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:55:59.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:59.729][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.729][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:59.731][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:55:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:55:59.738][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.738][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:59.738][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:59.740][self$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:59.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:59.750][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:59.751][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:59.753][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:59.754][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:59.758][self$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:55:59.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:59.767][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:59.769][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:59.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:59.778][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:55:59.779][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2024-11-05 05:55:59.781][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:55:59.782][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:55:59.786][private$loadEntries] Creating entries from ids [1]: "A3".
biodb.DEBUG[2024-11-05 05:55:59.787][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:55:59.789][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:55:59.791][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:55:59.792][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:55:59.794][private$doGetEntryContentFromDb] Entry id: A3
biodb.DEBUG[2024-11-05 05:55:59.798][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A3 C6H8O7 100
A3 C6H8O7 110
A3 C6H8O7 120
biodb.DEBUG[2024-11-05 05:55:59.800][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:55:59.802][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:55:59.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:55:59.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:55:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:55:59.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:55:59.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:55:59.814][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.814][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:59.814][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:59.815][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.815][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:59.815][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:55:59.817][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:55:59.817][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:55:59.817][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:55:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:59.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:59.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:55:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:55:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:55:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:55:59.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:55:59.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.936][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:59.938][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:55:59.939][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:55:59.941][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:55:59.942][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:55:59.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:55:59.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:55:59.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:55:59.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.955][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.956][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.959][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.961][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:59.962][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:55:59.964][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:55:59.965][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:55:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:55:59.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:59.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:55:59.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.985][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:55:59.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.990][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:55:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:55:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:55:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:00.048][self$createEntryFromContent] Accession numbers: A3.
biodb.DEBUG[2024-11-05 05:56:00.050][private$loadEntries] Creating entries from ids [2]: "A1, A2".
biodb.DEBUG[2024-11-05 05:56:00.051][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:56:00.053][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:00.055][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:00.056][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:00.057][private$doGetEntryContentFromDb] Entry id: A1, A2
biodb.DEBUG[2024-11-05 05:56:00.062][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 80
biodb.DEBUG[2024-11-05 05:56:00.064][self$createEntryFromContent] Creating Mass spectra CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:56:00.066][self$createEntryFromContent] Parsing 2 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:56:00.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:00.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:00.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:00.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:00.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.206][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.207][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:00.208][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.209][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:00.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.222][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.223][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.227][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.229][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.230][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:00.231][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.272][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:00.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:00.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:00.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:00.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:00.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.339][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:00.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:00.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.421][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.422][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:00.424][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.425][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:00.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.432][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.437][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.439][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.443][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.444][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.446][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:00.447][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:00.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.476][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:00.543][self$createEntryFromContent] Accession numbers: A1, A2.
biodb.DEBUG[2024-11-05 05:56:00.545][self$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:00.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:00.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:00.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:00.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:00.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.574][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.579][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.585][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.586][private$selectFields]
biodb.TRACE[2024-11-05 05:56:00.587][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.590][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:56:00.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.596][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.602][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.603][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.607][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.619][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.620][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.623][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.624][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.626][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.638][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.639][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.642][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.643][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:56:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A3, C6H8O7, 100;110;120].
biodb.DEBUG[2024-11-05 05:56:00.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:00.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:00.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:00.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:00.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.728][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.729][private$selectFields]
biodb.TRACE[2024-11-05 05:56:00.730][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.733][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:56:00.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.740][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.745][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.747][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.751][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.762][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.763][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.767][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.768][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.770][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.774][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.781][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.782][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.786][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:56:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.831][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A1, C3H10N2, 80].
biodb.TRACE[2024-11-05 05:56:00.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:00.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:00.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.862][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:00.863][private$selectFields]
biodb.TRACE[2024-11-05 05:56:00.864][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:00.867][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:56:00.868][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.874][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.877][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.879][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.880][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.888][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.889][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.894][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.896][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.900][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.901][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:00.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.907][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.912][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.914][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.918][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:56:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:00.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:00.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.962][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:00.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:00.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A2, C6H12O6, 90].
biodb.DEBUG[2024-11-05 05:56:00.970][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.TRACE[2024-11-05 05:56:00.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A1|A2, C3H10N2|C6H12O6, 80|90].
biodb.DEBUG[2024-11-05 05:56:00.974][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:00.975][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:56:00.980][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:00.985][biodb::testThat]
biodb.INFO [2024-11-05 05:56:00.986][biodb::testThat] Running test function test.addColsToDataframe (" addColsToDataframe() works correctly. ").
biodb.INFO [2024-11-05 05:56:00.987][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:00.988][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:00.993][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:00.995][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:56:00.999][private$loadEntries] Creating entries from ids [2]: "A2, A3".
biodb.DEBUG[2024-11-05 05:56:01.000][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:56:01.002][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:01.003][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:01.004][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:01.006][private$doGetEntryContentFromDb] Entry id: A2, A3
biodb.DEBUG[2024-11-05 05:56:01.007][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.014][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.016][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:01.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.030][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.030][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.032][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:56:01.033][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.039][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.039][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.039][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.043][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A2 C6H12O6 90
biodb.DEBUG[2024-11-05 05:56:01.045][self$createEntryFromContent] Creating Mass spectra CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:56:01.047][self$createEntryFromContent] Parsing 2 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:56:01.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:01.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:01.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:01.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:01.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:01.058][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.058][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.058][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.059][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.059][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.059][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.061][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.061][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.061][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:56:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.166][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.167][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:01.169][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:01.170][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:01.171][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.176][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.181][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.183][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.186][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.188][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.189][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:01.190][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:01.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:01.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:01.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:01.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:01.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.323][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.368][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.369][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:01.370][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:01.372][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:01.373][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.379][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.384][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.386][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.390][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.391][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.392][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:01.394][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.497][self$createEntryFromContent] Accession numbers: A2, A3.
biodb.DEBUG[2024-11-05 05:56:01.504][self$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:01.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:01.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:01.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:01.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:01.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.534][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.535][private$selectFields]
biodb.TRACE[2024-11-05 05:56:01.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:01.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:01.539][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.545][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.547][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.549][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.551][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.556][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.558][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.562][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.563][private$organizeFieldsByGroups] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.564][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.570][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.571][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.575][private$organizeFieldsByGroups] Groups [2]: "c("formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:56:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.593][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.604][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [formula, msprecmz] [C6H12O6, 90].
biodb.DEBUG[2024-11-05 05:56:01.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:01.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:01.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:01.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:01.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.640][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.642][private$selectFields]
biodb.TRACE[2024-11-05 05:56:01.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:01.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:01.645][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.652][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.654][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.658][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.663][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.664][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.668][private$selectFields] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.670][private$organizeFieldsByGroups] Fields [2]: "formula, msprecmz"
biodb.TRACE[2024-11-05 05:56:01.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.677][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.678][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.682][private$organizeFieldsByGroups] Groups [2]: "c("formula", "msprecmz"), list()"
biodb.TRACE[2024-11-05 05:56:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [formula, msprecmz] [C6H8O7, 100;110].
biodb.DEBUG[2024-11-05 05:56:01.719][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:01.720][self$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:56:01.725][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:01.730][biodb::testThat]
biodb.INFO [2024-11-05 05:56:01.732][biodb::testThat] Running test function test.entriesToSingleFieldValues (" entriesToSingleFieldValues() works correctly. ").
biodb.INFO [2024-11-05 05:56:01.733][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:01.734][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:01.739][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:01.741][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:56:01.743][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.750][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.752][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:01.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.759][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.759][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.761][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:56:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:01.768][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.768][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.768][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.772][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2024-11-05 05:56:01.773][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-05 05:56:01.775][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:01.777][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:01.778][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:01.780][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2024-11-05 05:56:01.786][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 100
biodb.DEBUG[2024-11-05 05:56:01.788][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:56:01.789][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:56:01.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:01.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:01.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:01.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:01.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:01.801][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.801][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.801][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.802][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.802][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.802][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:01.804][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:01.804][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:01.804][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:56:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.906][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:01.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.923][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.924][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:01.925][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:01.926][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:01.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:01.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.939][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.940][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.952][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.954][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:01.955][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:01.956][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:02.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:02.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:02.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:02.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.136][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.138][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:02.139][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:02.140][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:02.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.153][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.154][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.158][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.160][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.161][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:02.163][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:02.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:02.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:02.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:02.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.266][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.331][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.355][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.357][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:02.358][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:02.359][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:02.361][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.366][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.372][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.373][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.377][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.378][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.380][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:02.381][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.429][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.497][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.TRACE[2024-11-05 05:56:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.668][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.679][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.685][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.690][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.695][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:02.703][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:02.708][biodb::testThat]
biodb.INFO [2024-11-05 05:56:02.709][biodb::testThat] Running test function test.entryIdsToSingleFieldValues (" entryIdsToSingleFieldValues() works correctly. ").
biodb.INFO [2024-11-05 05:56:02.711][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:02.712][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:02.717][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:02.719][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:56:02.721][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.727][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.729][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.736][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.736][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:02.737][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:56:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.744][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.744][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:02.744][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:02.749][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2024-11-05 05:56:02.750][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-05 05:56:02.752][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:02.753][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:02.755][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:02.756][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2024-11-05 05:56:02.762][private$doGetEntryContentFromDb] Content of first entry: accession formula msprecmz
A1 C3H10N2 100
biodb.DEBUG[2024-11-05 05:56:02.764][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:56:02.765][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:56:02.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:02.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:02.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:02.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:02.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:02.777][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.777][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:02.777][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:02.778][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.778][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:02.778][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:02.780][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:02.780][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:02.780][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:56:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.808][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.900][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.901][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:02.902][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:02.903][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:02.905][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.909][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.910][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:02.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:02.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.914][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.915][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.917][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.921][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.922][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:02.923][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:02.925][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.953][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:02.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:02.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:02.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:02.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:02.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.017][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.023][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.108][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.110][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:03.111][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:03.112][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:03.114][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.125][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.126][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.130][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.132][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.133][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:03.134][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:03.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:03.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:03.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:03.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:03.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.233][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.323][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.325][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:03.326][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:03.327][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:03.329][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.340][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.341][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.353][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.355][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.357][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:03.358][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.382][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.387][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:03.471][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.TRACE[2024-11-05 05:56:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:03.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.644][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.655][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.667][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.679][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:03.687][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:03.692][biodb::testThat]
biodb.INFO [2024-11-05 05:56:03.694][biodb::testThat] Running test function test.entriesFieldToVctOrLst (" entriesFieldToVctOrLst() works correctly. ").
biodb.INFO [2024-11-05 05:56:03.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:03.696][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:03.701][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:03.703][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:56:03.705][private$loadEntries] Creating entries from ids [1]: "A1".
biodb.DEBUG[2024-11-05 05:56:03.706][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:03.708][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:03.709][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:03.710][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:03.712][private$doGetEntryContentFromDb] Entry id: A1
biodb.DEBUG[2024-11-05 05:56:03.713][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:03.720][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:03.722][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:56:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:03.729][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:03.729][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:03.733][private$doGetEntryContentFromDb] Content of first entry: accession msprecmz
A1 80
A1 90
A1 100
A1 110
A1 120
biodb.DEBUG[2024-11-05 05:56:03.735][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:03.736][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:56:03.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:03.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:03.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:03.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:03.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:03.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:03.748][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:03.749][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:03.749][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:56:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.861][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.862][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:56:03.863][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:03.865][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:56:03.866][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.870][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.872][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.873][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.877][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.879][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:03.880][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:03.881][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:03.963][self$createEntryFromContent] Accession numbers: A1.
biodb.TRACE[2024-11-05 05:56:03.966][self$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.968][self$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.969][self$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.971][self$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.975][self$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.977][self$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.978][self$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.980][self$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:04.003][self$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.004][self$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.006][self$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:04.007][self$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:04.011][self$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.013][self$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.014][self$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:04.015][self$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:04.039][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:04.044][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:04.046][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:04.047][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.050][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:04.057][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:04.060][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:04.065][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:04.066][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:04.068][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.073][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:04.075][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.080][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:04.081][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.087][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:04.088][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:04.089][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.095][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:04.096][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:04.097][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.103][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:04.104][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.109][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:04.110][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:04.112][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:04.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.117][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:04.119][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.124][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:04.125][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:04.127][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.132][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:04.133][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:04.135][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:04.136][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:04.137][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:04.139][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:04.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.144][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:04.146][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:04.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.151][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:04.152][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:04.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.157][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:04.159][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.164][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:04.166][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:04.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.172][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:04.174][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:04.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.179][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:04.180][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:04.185][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:04.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.190][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:04.192][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:04.193][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:04.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.198][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:04.201][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.203][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:04.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.207][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.208][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.210][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.211][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.212][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:04.214][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.215][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.216][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:04.218][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.219][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.221][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.222][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:04.222][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:04.222][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:04.222][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:04.222][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:04.223][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.231][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.233][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.234][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.235][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.237][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.238][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.240][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:04.242][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.244][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:04.245][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.246][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.248][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.249][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.250][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.252][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.253][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:04.255][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.256][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.257][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:04.259][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.260][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.261][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.263][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:04.263][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:04.263][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:04.263][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:04.263][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:04.264][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.268][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.272][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.274][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.275][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.276][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.278][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.279][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.281][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:04.284][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.285][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:04.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.288][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.289][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.291][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.292][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.293][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.295][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:04.296][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.298][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.299][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:04.300][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.302][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.313][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.314][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.316][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.320][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.324][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.325][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.326][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.329][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.331][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.332][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:04.335][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.337][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:04.338][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.340][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.341][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.343][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.344][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.346][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.347][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:04.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.350][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.351][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:04.353][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.354][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.355][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.357][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.358][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.362][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.367][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.369][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.370][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.371][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.373][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.374][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:04.376][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.487][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:04.489][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:04.491][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:04.493][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:04.495][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:04.497][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:04.499][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:04.501][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:04.503][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:04.505][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:04.507][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:04.509][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:04.511][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:04.513][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:04.515][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:04.517][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:04.519][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:04.521][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:04.523][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:04.525][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:04.527][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:04.529][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:04.531][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:04.533][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:04.535][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:04.537][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:04.539][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:04.541][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:04.543][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:04.545][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:04.547][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:04.549][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:04.551][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:04.553][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:04.556][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:04.558][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:04.560][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:04.562][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:04.564][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:04.566][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:04.568][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:04.570][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:04.572][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:04.574][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:04.576][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:04.578][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:04.581][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:04.583][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:04.585][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:04.587][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:04.589][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:04.591][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:04.593][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:04.595][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:04.597][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:04.599][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:04.601][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:04.603][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:04.605][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:04.607][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:04.609][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:04.611][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:04.613][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:04.615][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:04.617][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:04.619][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:04.621][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:04.623][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:04.625][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:04.627][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:04.629][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:04.631][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:04.633][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:04.635][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:04.637][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:04.639][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:04.641][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:04.643][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:04.645][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:04.647][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:04.649][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:04.651][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:04.653][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:04.655][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:04.657][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:04.658][biodb::testContext]
biodb.INFO [2024-11-05 05:56:04.660][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:04.661][biodb::testContext] Test context - Test BiodbDbInfo.
biodb.INFO [2024-11-05 05:56:04.662][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:04.664][biodb::testContext]
biodb.INFO [2024-11-05 05:56:04.666][biodb::testThat]
biodb.INFO [2024-11-05 05:56:04.667][biodb::testThat] Running test function test.namedProp (" Named properties work correctly. ").
biodb.INFO [2024-11-05 05:56:04.668][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:04.670][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:04.673][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.674][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.676][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.677][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.679][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.680][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.681][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.684][self$setPropertyValue] Setting property "entry.content.type" to "txt".
biodb.DEBUG[2024-11-05 05:56:04.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.687][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.688][self$setPropertyValue] Setting property "name" to "MyDb".
biodb.DEBUG[2024-11-05 05:56:04.690][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.691][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.692][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.694][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.695][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.698][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.699][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.704][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.706][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.707][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.708][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.710][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.711][self$setPropertyValue] Setting property "urls" to "http://some/url/that/points/somewhere".
biodb.DEBUG[2024-11-05 05:56:04.713][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.714][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.INFO [2024-11-05 05:56:04.720][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:04.722][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:04.723][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:04.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:04.725][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:04.733][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:04.735][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:04.740][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:04.742][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:04.743][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.748][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:04.750][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.754][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:04.756][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.761][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:04.762][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:04.764][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.769][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:04.770][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:04.772][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.793][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:04.794][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.800][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:04.801][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:04.803][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:04.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.807][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:04.809][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.814][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:04.815][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:04.816][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:04.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.821][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:04.822][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:04.824][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:04.825][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:04.826][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:04.828][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:04.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.833][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:04.834][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:04.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.839][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:04.840][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:04.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.845][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:04.846][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:04.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.851][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:04.852][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:04.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.857][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:04.859][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:04.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.864][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:04.865][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:04.870][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:04.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.876][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:04.877][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:04.879][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:04.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:04.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:04.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:04.884][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:04.887][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.888][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:04.890][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.891][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.892][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.893][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.895][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.897][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:04.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.900][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.901][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:04.903][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.904][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.905][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.906][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:04.906][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:04.906][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:04.906][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:04.906][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:04.908][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.915][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.917][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.919][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.920][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.922][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.923][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:04.926][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.927][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:04.928][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.930][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.931][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.932][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.933][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.935][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.936][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:04.937][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.939][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.940][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:04.941][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.943][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.944][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.945][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:04.945][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:04.945][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:04.945][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:04.945][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:04.946][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.948][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.949][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.950][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.953][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.954][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.955][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.956][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.958][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.959][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.960][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.962][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:04.964][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.965][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:04.967][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.968][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:04.969][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.971][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.972][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.973][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.975][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:04.976][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:04.977][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:04.979][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:04.980][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:04.982][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.983][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:04.984][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.986][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:04.987][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.988][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.989][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:04.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:04.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:04.993][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:04.994][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:04.996][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:04.997][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:04.998][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:05.000][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:05.001][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:05.004][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:05.005][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:05.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:05.008][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:05.009][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:05.010][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:05.012][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:05.013][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:05.014][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:05.016][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:05.017][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:05.018][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:05.020][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:05.021][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:05.022][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:05.024][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:05.025][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:05.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:05.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:05.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:05.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:05.031][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:05.033][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:05.034][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:05.035][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:05.037][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:05.038][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:05.039][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:05.041][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:05.042][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.148][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:05.150][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:05.152][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:05.154][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:05.156][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:05.158][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:05.159][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:05.161][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:05.163][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:05.165][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:05.167][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:05.169][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:05.171][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:05.173][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:05.175][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:05.177][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:05.179][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:05.181][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:05.183][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:05.185][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:05.187][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:05.190][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:05.192][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:05.194][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:05.196][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:05.198][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:05.200][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:05.202][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:05.204][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:05.206][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:05.208][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:05.210][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:05.212][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:05.214][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:05.216][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:05.218][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:05.220][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:05.222][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:05.224][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:05.226][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:05.228][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:05.230][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:05.233][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:05.235][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:05.237][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:05.248][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:05.250][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:05.253][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:05.255][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:05.257][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:05.259][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:05.262][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:05.264][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:05.266][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:05.268][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:05.270][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:05.272][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:05.274][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:05.276][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:05.278][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:05.281][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:05.283][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:05.285][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:05.287][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:05.289][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:05.292][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:05.294][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:05.296][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:05.298][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:05.300][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:05.303][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:05.305][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:05.307][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:05.309][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:05.312][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:05.314][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:05.316][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:05.318][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:05.320][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:05.323][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:05.325][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:05.327][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:05.329][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:05.331][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:05.334][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:05.336][biodb::testContext]
biodb.INFO [2024-11-05 05:56:05.337][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:05.339][biodb::testContext] Test context - Test BiodbEntry.
biodb.INFO [2024-11-05 05:56:05.341][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:05.342][biodb::testContext]
biodb.INFO [2024-11-05 05:56:05.345][biodb::testThat]
biodb.INFO [2024-11-05 05:56:05.346][biodb::testThat] Running test function test.getFieldValue (" getFieldValue() works correctly. ").
biodb.INFO [2024-11-05 05:56:05.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:05.349][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:05.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:05.456][biodb::testThat]
biodb.INFO [2024-11-05 05:56:05.458][biodb::testThat] Running test function test.getFieldsAsDataframe (" getFieldsAsDataframe() works correctly. ").
biodb.INFO [2024-11-05 05:56:05.459][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:05.460][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.489][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.490][private$selectFields]
biodb.TRACE[2024-11-05 05:56:05.492][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.494][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.496][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.497][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2024-11-05 05:56:05.499][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2024-11-05 05:56:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.531][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.533][private$selectFields]
biodb.TRACE[2024-11-05 05:56:05.534][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.537][private$selectFields] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:56:05.538][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.548][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.549][private$selectFields] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:56:05.550][private$organizeFieldsByGroups] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:56:05.552][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.557][private$organizeFieldsByGroups] Groups [2]: "accession, list()"
biodb.TRACE[2024-11-05 05:56:05.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.628][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.629][private$selectFields]
biodb.TRACE[2024-11-05 05:56:05.630][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.633][private$selectFields] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.640][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.641][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.644][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.645][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.646][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.655][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.657][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.661][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.662][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.666][private$selectFields] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.667][private$organizeFieldsByGroups] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.669][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.674][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.675][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.678][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.679][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.680][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.684][private$organizeFieldsByGroups] Groups [2]: "accession, list(peaks = c("peak.mztheo", "peak.mz"))"
biodb.TRACE[2024-11-05 05:56:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.760][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:05.761][private$selectFields]
biodb.TRACE[2024-11-05 05:56:05.762][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:05.765][private$selectFields] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.766][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.771][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.773][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.777][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.778][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.782][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.787][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.789][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.792][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.794][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.798][private$selectFields] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.799][private$organizeFieldsByGroups] Fields [3]: "accession, peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:56:05.800][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.806][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.807][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.810][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.811][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.812][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.816][private$organizeFieldsByGroups] Groups [2]: "accession, list(peaks = c("peak.mztheo", "peak.mz"))"
biodb.TRACE[2024-11-05 05:56:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:05.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:05.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:05.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:05.874][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:05.876][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:05.877][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:05.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:05.879][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:05.886][biodb::testContext]
biodb.INFO [2024-11-05 05:56:05.888][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:05.889][biodb::testContext] Test context - Test chebi.ex connector.
biodb.INFO [2024-11-05 05:56:05.891][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:05.892][biodb::testContext]
biodb.INFO [2024-11-05 05:56:05.895][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:05.897][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:05.902][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:05.904][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:05.905][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.910][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:05.912][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.916][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:05.918][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.923][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:05.924][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:05.925][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:05.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.930][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:05.932][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:05.933][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.938][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:05.939][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:05.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.944][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:05.945][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:05.947][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:05.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.951][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:05.953][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.958][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:05.959][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:05.960][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:05.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.965][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:05.966][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:05.968][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:05.969][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:05.970][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:05.972][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:05.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.977][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:05.978][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:05.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.983][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:05.984][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:05.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.989][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:05.990][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:05.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:05.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:05.995][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:05.996][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:05.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:05.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.001][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:06.003][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:06.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.007][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:06.009][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:06.014][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:06.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.019][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:06.020][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:06.021][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:06.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.026][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:06.029][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.030][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:06.032][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:06.034][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.036][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.037][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.038][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.040][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:06.041][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:06.042][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.044][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:06.045][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:06.046][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.047][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.049][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:06.049][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:06.049][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:06.049][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:06.049][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:06.050][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:06.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.053][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.054][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:06.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.058][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.059][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:06.062][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:06.063][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.064][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.066][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:06.068][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.070][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:06.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:06.074][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.075][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.076][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.078][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.079][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:06.080][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:06.082][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.083][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:06.084][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:06.086][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.087][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.089][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:06.089][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:06.089][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:06.089][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:06.089][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:06.090][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:06.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.094][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:06.095][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.098][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.099][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.100][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:06.101][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:06.103][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.104][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.106][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:06.108][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.110][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:06.111][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:06.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.116][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.117][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.119][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:06.120][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:06.121][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.123][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:06.124][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:06.125][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.127][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.128][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:06.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.133][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:06.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.138][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.139][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:06.140][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:06.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.143][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.145][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:06.147][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.148][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:06.150][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.151][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:06.152][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.153][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.155][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.156][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.157][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:06.159][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:06.160][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.161][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:06.163][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:06.164][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.165][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.166][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.168][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:06.169][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.170][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.172][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:06.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.185][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.186][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.188][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:06.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:06.191][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.192][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:06.194][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:06.195][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:06.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.295][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:06.297][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:06.299][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:06.301][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:06.302][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:06.304][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:06.306][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:06.308][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:06.310][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:06.312][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:06.313][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:06.315][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:06.317][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:06.319][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:06.321][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:06.322][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:06.324][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:06.326][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:06.328][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:06.330][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:06.332][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:06.333][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:06.335][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:06.337][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:06.339][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:06.341][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:06.343][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:06.344][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:06.346][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:06.348][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:06.350][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:06.352][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:06.354][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:06.355][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:06.357][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:06.359][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:06.361][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:06.363][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:06.365][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:06.366][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:06.368][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:06.370][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:06.372][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:06.374][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:06.376][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:06.378][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:06.379][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:06.381][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:06.383][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:06.385][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:06.387][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:06.389][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:06.390][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:06.392][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:06.394][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:06.396][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:06.398][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:06.400][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:06.401][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:06.403][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:06.405][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:06.407][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:06.409][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:06.410][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:06.412][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:06.414][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:06.416][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:06.418][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:06.420][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:06.421][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:06.423][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:06.425][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:06.427][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:06.429][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:06.431][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:06.432][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:06.434][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:06.436][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:06.438][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:06.440][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:06.442][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:06.443][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:06.445][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:06.447][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:06.449][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:06.460][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:06.474][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:06.477][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.478][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:06.479][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.481][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:06.482][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.483][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.484][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.486][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:06.487][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:06.488][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:06.490][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.491][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:06.492][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:06.493][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:06.495][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:06.496][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:06.496][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:06.496][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:06.497][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:06.499][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.500][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.501][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:06.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:06.503][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:06.504][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:06.506][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:06.506][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:06.507][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:06.508][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:06.509][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:06.511][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:06.511][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:06.519][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:06.557][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:06.558][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:06.560][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:06.561][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:06.567][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:06.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:06.570][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:06.571][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.INFO [2024-11-05 05:56:06.575][biodb::testThat]
biodb.INFO [2024-11-05 05:56:06.576][biodb::testThat] Running test function test_chebiex_getEntryPageUrl (" getEntryPageUrl() works. ").
biodb.INFO [2024-11-05 05:56:06.577][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:06.579][biodb::testThat]
biodb.INFO [2024-11-05 05:56:06.596][biodb::testThat]
biodb.INFO [2024-11-05 05:56:06.598][biodb::testThat] Running test function test_chebiex_getEntryImageUrl (" getEntryImageUrl() works. ").
biodb.INFO [2024-11-05 05:56:06.599][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:06.600][biodb::testThat]
biodb.INFO [2024-11-05 05:56:06.630][biodb::testThat]
biodb.INFO [2024-11-05 05:56:06.632][biodb::testThat] Running test function test_getEntry (" We can retrieve entries. ").
biodb.INFO [2024-11-05 05:56:06.633][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:06.634][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:06.637][private$loadEntries] Creating entries from ids [1]: "17001".
biodb.DEBUG[2024-11-05 05:56:06.639][conn$getEntryContent] Get ChEBI example connector entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:56:06.642][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17001".
biodb.INFO [2024-11-05 05:56:06.644][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649" for "chebi.ex-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2024-11-05 05:56:06.646][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-05 05:56:06.647][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:56:06.648][conn$getEntryContent] 0 ChEBI example connector entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:06.650][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI example connector database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:06.651][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:06.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:06.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:06.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:06.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:06.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:06.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:06.667][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17001".
biodb.DEBUG[2024-11-05 05:56:06.672][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:06.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:06.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17001".
biodb.TRACE[2024-11-05 05:56:08.920][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17001).
biodb.DEBUG[2024-11-05 05:56:09.665][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-05 05:56:09.668][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/a70ec92c96b0eb4663e32837028a7a51.content"
biodb.TRACE[2024-11-05 05:56:09.673][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/a70ec92c96b0eb4663e32837028a7a51.request"
biodb.TRACE[2024-11-05 05:56:09.676][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/17001.xml"
biodb.DEBUG[2024-11-05 05:56:09.678][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:56:09.680][self$createEntryFromContent] Creating ChEBI example connector entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:09.682][self$createEntryFromContent] Parsing 1 ChEBI example connector entries.
biodb.DEBUG[2024-11-05 05:56:09.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:09.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:09.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:09.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:09.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:09.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.710][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:09.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:09.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:09.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:09.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:09.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:09.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:09.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.746][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:09.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:09.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:09.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:09.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.768][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:09.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:09.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:09.781][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:09.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:09.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:09.848][self$createEntryFromContent] Accession numbers: 17001.
biodb.DEBUG[2024-11-05 05:56:09.851][private$loadEntries] Creating entries from ids [1]: "17001".
biodb.DEBUG[2024-11-05 05:56:09.852][conn$getEntryContent] Get ChEBI example connector entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:56:09.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17001".
biodb.TRACE[2024-11-05 05:56:09.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-05 05:56:09.858][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/17001.xml".
biodb.DEBUG[2024-11-05 05:56:09.860][conn$getEntryContent] 1 ChEBI example connector entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:09.862][self$createEntryFromContent] Creating ChEBI example connector entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:09.864][self$createEntryFromContent] Parsing 1 ChEBI example connector entries.
biodb.DEBUG[2024-11-05 05:56:09.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:09.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:09.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:09.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:09.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:09.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:09.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.979][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:09.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:09.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.991][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:09.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:09.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:10.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:10.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.010][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:10.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:10.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:10.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:10.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.034][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:10.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:10.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.047][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:10.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:10.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:10.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:10.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:10.138][self$createEntryFromContent] Accession numbers: 17001.
biodb.DEBUG[2024-11-05 05:56:10.142][private$loadEntries] Creating entries from ids [1]: "foo".
biodb.DEBUG[2024-11-05 05:56:10.143][conn$getEntryContent] Get ChEBI example connector entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:56:10.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "foo".
biodb.TRACE[2024-11-05 05:56:10.147][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-05 05:56:10.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:56:10.150][conn$getEntryContent] 0 ChEBI example connector entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:10.152][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI example connector database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:10.153][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:10.154][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:10.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:10.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:10.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:10.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:10.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:10.210][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=foo".
biodb.DEBUG[2024-11-05 05:56:10.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:10.234][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:10.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=foo".
biodb.TRACE[2024-11-05 05:56:11.000][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=foo).
biodb.DEBUG[2024-11-05 05:56:11.732][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-05 05:56:11.735][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/39e2c70f5ec6cfc8778096ee6be1d7c7.content"
biodb.TRACE[2024-11-05 05:56:11.740][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/39e2c70f5ec6cfc8778096ee6be1d7c7.request"
biodb.TRACE[2024-11-05 05:56:11.744][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/foo.xml"
biodb.DEBUG[2024-11-05 05:56:11.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:56:11.748][self$createEntryFromContent] Creating ChEBI example connector entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:11.750][self$createEntryFromContent] Parsing 1 ChEBI example connector entries.
biodb.DEBUG[2024-11-05 05:56:11.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:11.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:11.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:11.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:11.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:11.762][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:11.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:11.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:11.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:11.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:11.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:11.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.792][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.794][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:11.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:11.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:11.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:11.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:11.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:11.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:11.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.818][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:11.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:11.874][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-11-05 05:56:11.876][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-05 05:56:11.882][private$loadEntries] Creating entries from ids [3]: "2528, 15440, 7799".
biodb.DEBUG[2024-11-05 05:56:11.884][conn$getEntryContent] Get ChEBI example connector entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-05 05:56:11.886][cch$loadFileContent] Trying to load 3 files from cache: [3]: "2528, 15440, 7799".
biodb.TRACE[2024-11-05 05:56:11.888][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-05 05:56:11.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:56:11.891][conn$getEntryContent] 0 ChEBI example connector entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:11.892][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI example connector database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:11.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:11.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:11.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:11.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:11.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:11.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:11.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:11.907][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2024-11-05 05:56:11.911][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:11.912][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:11.914][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2024-11-05 05:56:12.639][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2024-11-05 05:56:13.562][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-05 05:56:13.565][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2024-11-05 05:56:13.570][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2024-11-05 05:56:13.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:13.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:13.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:13.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:13.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:13.579][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-11-05 05:56:13.583][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:13.584][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:13.586][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-11-05 05:56:14.318][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-11-05 05:56:15.224][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-05 05:56:15.227][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-11-05 05:56:15.232][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2024-11-05 05:56:15.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:15.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:15.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:15.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:15.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:15.240][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2024-11-05 05:56:15.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:15.246][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:15.248][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2024-11-05 05:56:16.513][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2024-11-05 05:56:18.449][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-05 05:56:18.452][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2024-11-05 05:56:18.486][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2024-11-05 05:56:18.490][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2024-11-05 05:56:18.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:56:18.495][self$createEntryFromContent] Creating ChEBI example connector entries from 3 content(s).
biodb.DEBUG[2024-11-05 05:56:18.497][self$createEntryFromContent] Parsing 3 ChEBI example connector entries.
biodb.DEBUG[2024-11-05 05:56:18.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:18.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:18.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:18.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:18.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:18.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.525][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.560][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.566][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.587][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:18.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:18.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:18.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:18.603][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:18.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:18.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:18.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:18.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:18.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:18.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:18.672][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.729][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.736][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.757][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:18.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:18.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:18.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:18.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:18.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:18.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:18.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:18.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:18.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:18.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:18.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:18.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.905][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:18.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.955][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:18.991][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:18.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:18.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:18.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:19.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:19.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:19.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:19.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:19.175][self$createEntryFromContent] Accession numbers: 2528, 15440, 7799.
biodb.TRACE[2024-11-05 05:56:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:19.284][biodb::testThat]
biodb.INFO [2024-11-05 05:56:19.285][biodb::testThat] Running test function test_urlChange (" We can add or change URLs. ").
biodb.INFO [2024-11-05 05:56:19.287][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:19.289][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:19.292][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:19.292][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:19.292][self$setPropertyValue] Setting property "urls" to "/some/path/to/local/file".
biodb.DEBUG[2024-11-05 05:56:19.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:19.295][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:19.296][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:19.298][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:19.299][self$registerConnector] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:19.328][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:19.330][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:19.332][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:19.334][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:19.336][private$addConnectorRules] Create new rule for URL "/some/path/to/local/file" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:19.338][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:19.339][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-11-05 05:56:19.347][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:19.354][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:19.367][self$deleteConn] Connector "chebi.ex" deleted.
biodb.DEBUG[2024-11-05 05:56:19.369][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:19.370][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.373][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:19.386][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:19.388][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:19.395][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:19.397][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:19.399][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.406][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:19.408][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.415][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:19.418][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.424][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:19.425][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:19.427][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:19.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.432][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:19.433][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:19.435][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.440][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:19.442][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:19.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.447][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:19.449][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:19.451][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:19.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.456][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:19.458][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.463][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:19.465][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:19.467][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:19.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.472][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:19.473][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:19.475][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:19.476][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:19.478][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:19.480][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:19.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.485][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:19.487][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:19.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.492][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:19.494][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:19.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.500][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:19.502][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:19.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.508][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:19.510][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:19.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.515][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:19.517][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:19.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.522][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:19.524][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:19.529][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:19.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.535][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:19.537][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:19.538][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:19.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.544][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:19.547][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.549][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:19.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.552][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:19.553][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.555][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.557][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.558][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.560][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:19.561][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:19.563][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.565][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:19.566][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:19.568][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.569][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.571][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:19.571][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:19.571][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:19.571][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:19.571][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:19.572][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:19.574][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.576][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:19.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.580][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.582][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.583][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:19.585][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:19.586][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.588][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.589][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:19.592][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.594][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:19.595][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.597][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:19.598][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.600][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.601][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.603][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.604][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:19.606][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:19.607][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.609][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:19.610][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:19.612][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.613][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.614][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:19.614][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:19.614][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:19.614][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:19.614][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:19.616][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:19.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.620][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:19.622][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.623][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.625][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.626][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.628][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:19.629][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:19.630][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.632][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.645][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:19.648][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.650][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:19.652][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.653][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:19.655][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.657][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.658][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.660][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.661][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:19.663][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:19.664][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.666][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:19.667][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:19.669][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.670][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.672][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.673][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:19.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.677][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:19.679][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.682][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.683][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.684][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:19.686][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:19.687][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.688][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.690][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:19.693][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.695][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:19.696][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.698][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:19.699][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.702][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.705][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:19.706][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:19.708][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.709][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:19.711][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:19.712][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.714][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:19.715][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.717][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:19.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.721][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:19.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:19.724][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:19.726][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:19.727][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.729][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:19.730][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:19.732][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:19.733][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:19.736][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:19.737][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:19.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:19.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:19.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:19.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:19.850][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:19.852][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:19.855][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:19.857][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:19.859][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:19.862][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:19.864][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:19.866][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:19.868][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:19.871][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:19.873][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:19.875][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:19.877][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:19.880][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:19.882][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:19.884][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:19.886][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:19.888][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:19.891][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:19.893][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:19.895][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:19.897][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:19.899][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:19.902][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:19.904][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:19.906][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:19.908][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:19.910][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:19.913][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:19.915][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:19.917][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:19.919][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:19.922][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:19.924][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:19.926][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:19.928][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:19.930][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:19.933][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:19.935][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:19.937][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:19.939][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:19.942][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:19.944][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:19.946][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:19.948][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:19.951][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:19.953][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:19.955][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:19.957][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:19.959][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:19.962][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:19.964][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:19.966][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:19.968][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:19.970][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:19.973][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:19.975][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:19.977][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:19.979][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:19.981][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:19.984][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:19.986][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:19.988][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:19.990][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:19.993][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:19.995][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:19.997][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:19.999][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:20.001][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:20.003][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:20.006][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:20.008][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:20.010][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:20.012][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:20.014][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:20.016][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:20.019][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:20.021][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:20.023][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:20.025][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:20.027][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:20.029][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:20.032][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:20.034][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:20.036][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:20.038][biodb::testContext]
biodb.INFO [2024-11-05 05:56:20.039][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:20.041][biodb::testContext] Test context - Test BiodbFactory.
biodb.INFO [2024-11-05 05:56:20.042][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:20.043][biodb::testContext]
biodb.INFO [2024-11-05 05:56:20.045][biodb::testThat]
biodb.INFO [2024-11-05 05:56:20.047][biodb::testThat] Running test function test.connectorAlreadyExistsMassCsvFile (" We forbid identical connectors (MassCsvFile test). ").
biodb.INFO [2024-11-05 05:56:20.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:20.050][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:20.060][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:20.062][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:56:20.067][super$initialize] Initialize connector mass.csv.file.1.
biodb.ERROR[2024-11-05 05:56:20.069][biodb$getFactory()$createConn] A connector (mass.csv.file) already exists for database mass.csv.file with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv).
biodb.DEBUG[2024-11-05 05:56:20.089][super$initialize] Initialize connector mass.csv.file.1.
biodb.ERROR[2024-11-05 05:56:20.091][biodb$getFactory()$createConn] A connector (mass.csv.file) already exists for database mass.csv.file with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/../biodb/extdata/massbank_extract_lcms_1.tsv).
biodb.DEBUG[2024-11-05 05:56:20.112][super$initialize] Initialize connector mass.csv.file.1.
biodb.WARN [2024-11-05 05:56:20.126][biodb$getFactory()$createConn] A connector (mass.csv.file) already exists for database mass.csv.file with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/../biodb/extdata/massbank_extract_lcms_1.tsv).
biodb.INFO [2024-11-05 05:56:20.133][self$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:20.144][biodb::testThat]
biodb.INFO [2024-11-05 05:56:20.145][biodb::testThat] Running test function test.connectorAlreadyExistsChebiEx (" We forbid identical connectors (ChebiEx test). ").
biodb.INFO [2024-11-05 05:56:20.147][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:20.149][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:20.158][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:20.173][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.177][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.178][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:20.180][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:20.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:20.184][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:20.185][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:20.187][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:20.189][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:20.190][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:20.192][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:20.194][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:20.195][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:20.197][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.199][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.201][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.203][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:20.203][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:20.203][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:20.204][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:20.206][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.207][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.208][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:20.210][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.211][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.212][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:20.214][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:20.214][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:20.216][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:20.217][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:20.218][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:20.220][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:20.220][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:20.222][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:20.228][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.230][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.231][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.233][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:20.235][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.237][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.238][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.240][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:20.246][super$initialize] Initialize connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.248][super$initialize] Register connector chebi.ex.1 with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.249][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.251][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.253][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.254][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.274][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.276][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.278][rule$addConnector] Connector "chebi.ex.1" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.279][conn$.__enclos_env__$private$terminate] Unregister connector chebi.ex.1 from the request scheduler
biodb.ERROR[2024-11-05 05:56:20.281][biodb$getFactory()$createConn] A connector (chebi.ex) already exists for database chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.300][super$initialize] Initialize connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.302][super$initialize] Register connector chebi.ex.1 with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.303][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.319][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.320][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.322][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.323][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.325][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.327][rule$addConnector] Connector "chebi.ex.1" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.329][conn$.__enclos_env__$private$terminate] Unregister connector chebi.ex.1 from the request scheduler
biodb.WARN [2024-11-05 05:56:20.330][biodb$getFactory()$createConn] A connector (chebi.ex) already exists for database chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.336][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:20.338][self$deleteConn] Connector "chebi.ex" deleted.
biodb.INFO [2024-11-05 05:56:20.347][biodb::testThat]
biodb.INFO [2024-11-05 05:56:20.349][biodb::testThat] Running test function test.connectorDefaultValues (" A newly created connector get the default values. ").
biodb.INFO [2024-11-05 05:56:20.350][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:20.352][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:20.361][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:20.363][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.365][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:20.366][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:20.368][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.369][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:20.371][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.373][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.378][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.380][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.382][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.383][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.386][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:20.386][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:20.386][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:20.388][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.389][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:20.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.393][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:20.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.397][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:20.397][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:20.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:20.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:20.401][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:20.401][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:20.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:20.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:20.405][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:20.405][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:20.406][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:20.406][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:20.407][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:20.409][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:20.415][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.416][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.418][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.420][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:20.422][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.423][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.425][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.426][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:20.464][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:20.469][self$deleteConn] Connector "chebi.ex" deleted.
biodb.INFO [2024-11-05 05:56:20.490][biodb::testThat]
biodb.INFO [2024-11-05 05:56:20.492][biodb::testThat] Running test function test.connectorDeletion (" Connectors are deleted. ").
biodb.INFO [2024-11-05 05:56:20.493][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:20.495][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:20.508][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:20.511][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.533][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:20.535][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:20.537][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.538][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:20.540][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.542][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.544][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.546][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.550][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:20.556][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:20.557][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:20.557][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:20.557][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:20.559][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:20.561][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:20.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.565][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:20.567][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:20.568][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:20.570][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:20.570][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:20.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:20.573][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:20.574][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:20.574][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:20.576][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:20.577][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:20.579][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:20.579][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:20.581][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:20.581][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:20.582][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:20.584][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:20.634][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.636][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.638][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.641][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:20.643][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.644][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.647][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.648][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:20.752][super$initialize] Initialize connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.755][super$initialize] Register connector chebi.ex.1 with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.757][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.762][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.763][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.765][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.767][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.769][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.772][rule$addConnector] Connector "chebi.ex.1" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:20.774][conn$.__enclos_env__$private$terminate] Unregister connector chebi.ex.1 from the request scheduler
biodb.WARN [2024-11-05 05:56:20.777][biodb$getFactory()$createConn] A connector (chebi.ex) already exists for database chebi.ex.
biodb.DEBUG[2024-11-05 05:56:20.788][super$initialize] Initialize connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.789][super$initialize] Register connector chebi.ex.1 with the request scheduler
biodb.DEBUG[2024-11-05 05:56:20.791][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:20.794][private$addConnectorRules] Create new rule for URL "some.fake.chebi.site" of connector "chebi.ex.1".
biodb.DEBUG[2024-11-05 05:56:20.797][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.799][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.801][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.803][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.805][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:20.807][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.809][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:20.811][biodb$getFactory()$createConn] Creating new connector chebi.ex.1 for database class chebi.ex , with base URL "http://some.fake.chebi.site/".
biodb.DEBUG[2024-11-05 05:56:20.829][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:20.831][self$deleteConn] Connector "chebi.ex" deleted.
biodb.DEBUG[2024-11-05 05:56:20.833][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex.1 from the request scheduler
biodb.INFO [2024-11-05 05:56:20.835][self$deleteConn] Connector "chebi.ex.1" deleted.
biodb.INFO [2024-11-05 05:56:20.847][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:20.850][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:20.852][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:20.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:20.856][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:20.869][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:20.873][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:20.879][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:20.881][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:20.883][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.891][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:20.893][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.900][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:20.902][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.909][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:20.910][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:20.913][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:20.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.920][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:20.922][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:20.924][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.932][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:20.934][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:20.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.942][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:20.944][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:20.946][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:20.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.953][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:20.956][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.963][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:20.965][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:20.967][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:20.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.974][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:20.976][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:20.978][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:20.980][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:20.982][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:20.984][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:20.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:20.991][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:20.994][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:20.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:20.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:20.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.001][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:21.003][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:21.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.010][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:21.012][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:21.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.019][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:21.021][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:21.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.028][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:21.030][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:21.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.037][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:21.040][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:21.047][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:21.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.053][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:21.055][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:21.057][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:21.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.064][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:21.067][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.069][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:21.070][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.075][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.076][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.078][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.080][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:21.081][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.083][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.084][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:21.086][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.088][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.089][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.091][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:21.091][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:21.091][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:21.091][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:21.091][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:21.093][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.095][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.098][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.103][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.104][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.106][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.109][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.110][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.112][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:21.115][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.117][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:21.118][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.123][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.124][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.126][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.127][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:21.129][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.130][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.132][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:21.133][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.134][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.136][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.137][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:21.137][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:21.137][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:21.137][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:21.137][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:21.139][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.143][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.148][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.151][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.154][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.155][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:21.158][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.159][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:21.161][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.162][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.164][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.165][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.167][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.168][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.169][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:21.171][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.172][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.174][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:21.175][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.177][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.178][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.179][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.181][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.189][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.190][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.192][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.193][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.194][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.196][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.197][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:21.200][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.201][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:21.203][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.204][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.207][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.209][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.211][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:21.213][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.214][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.216][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:21.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.219][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.220][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.221][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.223][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.224][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.231][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.232][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.234][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.235][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.237][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.238][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.240][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:21.242][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.370][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:21.372][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:21.375][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:21.377][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:21.379][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:21.381][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:21.383][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:21.386][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:21.388][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:21.390][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:21.392][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:21.394][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:21.396][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:21.398][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:21.400][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:21.402][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:21.404][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:21.406][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:21.409][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:21.411][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:21.413][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:21.415][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:21.417][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:21.419][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:21.421][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:21.423][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:21.425][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:21.427][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:21.430][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:21.432][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:21.434][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:21.436][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:21.438][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:21.440][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:21.442][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:21.445][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:21.447][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:21.449][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:21.451][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:21.453][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:21.456][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:21.458][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:21.460][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:21.462][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:21.464][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:21.466][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:21.469][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:21.471][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:21.473][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:21.475][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:21.477][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:21.479][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:21.481][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:21.483][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:21.486][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:21.488][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:21.490][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:21.492][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:21.494][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:21.496][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:21.499][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:21.501][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:21.503][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:21.505][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:21.507][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:21.509][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:21.512][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:21.514][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:21.516][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:21.518][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:21.520][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:21.522][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:21.525][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:21.527][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:21.529][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:21.531][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:21.533][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:21.535][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:21.537][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:21.539][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:21.541][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:21.544][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:21.546][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:21.548][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:21.550][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:21.552][biodb::testContext]
biodb.INFO [2024-11-05 05:56:21.554][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:21.555][biodb::testContext] Test context - Test BiodbEntryField.
biodb.INFO [2024-11-05 05:56:21.556][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:21.558][biodb::testContext]
biodb.INFO [2024-11-05 05:56:21.560][biodb::testThat]
biodb.INFO [2024-11-05 05:56:21.561][biodb::testThat] Running test function test_entryFields (" BiodbEntryFields class works fine. ").
biodb.INFO [2024-11-05 05:56:21.563][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:21.564][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:21.567][biodb$getEntryFields()$get] Asked field names are: monoisotopic.mass, nominal.mass.
biodb.TRACE[2024-11-05 05:56:21.568][biodb$getEntryFields()$get] Realnames of fields are: monoisotopic.mass, nominal.mass.
biodb.TRACE[2024-11-05 05:56:21.570][biodb$getEntryFields()$get] 2 fields were returned.
biodb.TRACE[2024-11-05 05:56:21.571][biodb$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:21.582][biodb::testThat]
biodb.INFO [2024-11-05 05:56:21.584][biodb::testThat] Running test function test_newAlias (" We can add a new alias. ").
biodb.INFO [2024-11-05 05:56:21.585][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:21.586][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:21.589][efs$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:21.591][efs$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:21.592][efs$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:21.593][efs$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:21.603][biodb::testThat]
biodb.INFO [2024-11-05 05:56:21.605][biodb::testThat] Running test function test_newComputableFrom (" We can add new database for ComputableFrom. ").
biodb.INFO [2024-11-05 05:56:21.606][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:21.608][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:21.610][efs$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:21.612][efs$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:21.613][efs$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:21.615][efs$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:21.624][biodb::testThat]
biodb.INFO [2024-11-05 05:56:21.626][biodb::testThat] Running test function test_updateEntryField (" We can update an entry field. ").
biodb.INFO [2024-11-05 05:56:21.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:21.629][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:21.631][efs$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:21.633][efs$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:21.634][efs$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:21.635][efs$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:21.645][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:21.647][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:21.648][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:21.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:21.651][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:21.661][biodb::testContext]
biodb.INFO [2024-11-05 05:56:21.662][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:21.664][biodb::testContext] Test context - Test scheduler.
biodb.INFO [2024-11-05 05:56:21.665][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:21.667][biodb::testContext]
biodb.INFO [2024-11-05 05:56:21.670][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:21.672][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:21.677][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:21.679][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:21.681][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.686][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:21.688][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.693][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:21.695][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.700][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:21.702][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:21.703][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:21.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.709][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:21.710][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:21.712][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.718][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:21.719][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:21.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.725][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:21.726][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:21.728][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:21.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.733][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:21.735][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.740][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:21.742][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:21.744][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:21.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.749][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:21.751][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:21.752][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:21.754][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:21.755][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:21.757][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:21.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.762][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:21.764][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:21.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.769][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:21.771][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:21.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.788][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:21.790][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:21.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.797][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:21.799][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:21.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.805][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:21.807][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:21.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.812][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:21.814][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:21.819][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:21.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.824][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:21.825][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:21.827][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:21.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:21.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:21.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:21.833][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:21.835][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.837][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:21.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.840][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.842][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.844][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.847][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:21.848][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.850][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.851][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:21.853][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.854][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.856][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:21.857][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:21.857][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:21.857][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:21.857][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:21.858][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.863][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.867][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.868][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.870][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.871][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.873][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.874][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.876][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:21.879][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.880][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:21.882][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.883][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.885][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.886][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.887][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.889][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.890][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:21.892][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.893][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.895][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:21.896][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.898][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.899][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.901][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:21.901][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:21.901][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:21.901][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:21.901][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:21.902][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.907][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.911][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.913][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.914][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.915][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.917][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.918][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.920][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:21.923][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.924][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:21.926][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.927][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.929][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.930][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.932][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.933][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.935][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:21.936][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.938][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.939][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:21.941][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.942][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.944][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.945][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.947][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.948][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.950][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.951][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.953][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.954][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.955][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.957][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.958][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:21.960][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:21.961][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.963][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.964][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:21.967][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.969][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:21.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.972][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:21.973][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.975][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.976][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.978][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:21.979][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:21.981][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:21.982][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:21.984][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:21.985][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:21.987][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.988][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:21.990][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:21.991][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:21.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.995][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:21.997][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:21.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:21.999][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:22.001][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:22.002][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.004][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.005][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.006][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:22.008][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:22.010][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:22.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:22.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:22.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:22.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:22.127][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:22.129][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:22.131][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:22.133][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:22.135][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:22.137][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:22.139][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:22.141][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:22.143][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:22.146][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:22.148][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:22.150][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:22.152][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:22.154][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:22.156][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:22.158][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:22.160][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:22.162][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:22.164][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:22.166][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:22.168][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:22.170][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:22.172][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:22.174][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:22.176][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:22.178][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:22.180][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:22.182][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:22.184][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:22.186][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:22.189][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:22.191][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:22.193][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:22.195][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:22.197][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:22.199][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:22.201][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:22.203][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:22.205][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:22.207][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:22.210][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:22.212][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:22.214][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:22.216][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:22.218][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:22.220][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:22.222][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:22.224][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:22.226][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:22.228][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:22.230][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:22.233][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:22.235][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:22.237][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:22.239][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:22.250][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:22.253][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:22.255][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:22.257][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:22.259][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:22.261][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:22.263][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:22.265][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:22.268][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:22.270][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:22.272][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:22.274][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:22.276][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:22.279][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:22.281][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:22.283][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:22.286][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:22.288][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:22.290][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:22.292][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:22.294][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:22.296][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:22.298][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:22.300][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:22.303][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:22.305][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:22.307][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:22.309][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:22.311][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:22.313][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:22.315][biodb::testThat]
biodb.INFO [2024-11-05 05:56:22.317][biodb::testThat] Running test function test.schedulerRightRule (" Right rule is created. ").
biodb.INFO [2024-11-05 05:56:22.318][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:22.319][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:22.330][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:22.332][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.335][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.336][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:22.338][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:22.339][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:22.340][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:22.342][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:22.343][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:22.345][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:22.346][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:22.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:22.349][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:22.351][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:22.352][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.354][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.355][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.357][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:22.357][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:22.357][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:22.358][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.362][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:22.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:22.368][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:22.368][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:22.369][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.370][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.372][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:22.373][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:22.373][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:22.375][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:22.381][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.383][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:22.384][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.386][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:22.388][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.389][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.391][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:22.392][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:22.406][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:22.408][self$deleteConn] Connector "chebi.ex" deleted.
biodb.INFO [2024-11-05 05:56:22.421][biodb::testThat]
biodb.INFO [2024-11-05 05:56:22.422][biodb::testThat] Running test function test.schedulerRuleFrequency (" Frequency is updated correctly. ").
biodb.INFO [2024-11-05 05:56:22.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:22.425][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:22.436][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:22.438][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.439][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:22.441][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:22.442][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.444][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:22.445][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.447][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.448][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.450][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.452][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.453][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.455][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.457][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.458][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.460][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:22.460][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:22.460][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:22.461][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.463][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:22.464][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.465][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.466][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.468][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.469][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.471][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:22.471][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:22.472][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.473][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.475][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:22.475][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:22.476][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.477][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.479][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:22.479][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:22.480][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:22.480][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:22.482][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:22.483][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:22.490][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.491][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:22.492][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.495][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:22.496][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.498][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.499][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:22.501][biodb$getFactory()$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:22.502][chebi$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.504][chebi$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.506][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.507][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.509][o[[.notifyFct]]] Frequency changed for connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.510][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.511][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.513][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.515][chebi$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:22.517][chebi$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.518][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.519][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.520][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.522][o[[.notifyFct]]] Frequency changed for connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.523][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.524][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.526][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.527][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.532][function(biodb)] Hosts: none
biodb.DEBUG[2024-11-05 05:56:22.533][function(biodb)] Connector IDs: none
biodb.DEBUG[2024-11-05 05:56:22.543][super$initialize] Initialize connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.544][super$initialize] Register connector chebi.ex.1 with the request scheduler
biodb.DEBUG[2024-11-05 05:56:22.545][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.547][private$addConnectorRules] Create new rule for URL "some.fake.chebi.site" of connector "chebi.ex.1".
biodb.DEBUG[2024-11-05 05:56:22.549][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.550][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.552][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.554][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.555][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.556][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.558][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.559][biodb$getFactory()$createConn] Creating new connector chebi.ex.1 for database class chebi.ex , with base URL "http://some.fake.chebi.site/".
biodb.DEBUG[2024-11-05 05:56:22.561][function(biodb)] Hosts: none
biodb.DEBUG[2024-11-05 05:56:22.562][function(biodb)] Connector IDs: none
biodb.DEBUG[2024-11-05 05:56:22.573][function(biodb)] test.schedulerRuleFrequency 100
biodb.DEBUG[2024-11-05 05:56:22.574][chebi.2$setPropertyValue] Setting property "scheduler.n" to "4".
biodb.DEBUG[2024-11-05 05:56:22.576][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.577][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.578][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.579][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.581][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.582][rule$recomputeFrequency] t.conn=1.000000, n.conn=4.000000
biodb.DEBUG[2024-11-05 05:56:22.584][rule$recomputeFrequency] t=1.000000, n=4.000000
biodb.DEBUG[2024-11-05 05:56:22.585][self$setFrequency] t=1.000000, n=4.000000
biodb.DEBUG[2024-11-05 05:56:22.586][self$setFrequency] t=1.000000, n=4.000000
biodb.DEBUG[2024-11-05 05:56:22.588][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.589][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.590][rule$recomputeFrequency] t.conn=1.000000, n.conn=4.000000
biodb.DEBUG[2024-11-05 05:56:22.592][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.593][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.594][function(biodb)] test.schedulerRuleFrequency 101
biodb.DEBUG[2024-11-05 05:56:22.597][function(biodb)] test.schedulerRuleFrequency 102
biodb.DEBUG[2024-11-05 05:56:22.599][chebi.2$setPropertyValue] Setting property "scheduler.n" to "2".
biodb.DEBUG[2024-11-05 05:56:22.600][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.601][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.602][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.604][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.605][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.606][rule$recomputeFrequency] t.conn=1.000000, n.conn=2.000000
biodb.DEBUG[2024-11-05 05:56:22.608][rule$recomputeFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.609][self$setFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.610][self$setFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.612][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.613][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.615][rule$recomputeFrequency] t.conn=1.000000, n.conn=2.000000
biodb.DEBUG[2024-11-05 05:56:22.616][rule$recomputeFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.617][self$setFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.618][self$setFrequency] t=1.000000, n=2.000000
biodb.DEBUG[2024-11-05 05:56:22.620][function(biodb)] test.schedulerRuleFrequency 103
biodb.DEBUG[2024-11-05 05:56:22.623][function(biodb)] test.schedulerRuleFrequency 104
biodb.DEBUG[2024-11-05 05:56:22.624][chebi.2$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.626][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.627][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.628][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.629][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.631][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.632][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.633][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.635][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.636][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.638][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.639][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.640][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.643][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.644][function(biodb)] test.schedulerRuleFrequency 105
biodb.DEBUG[2024-11-05 05:56:22.647][function(biodb)] test.schedulerRuleFrequency 106
biodb.DEBUG[2024-11-05 05:56:22.649][chebi.2$setPropertyValue] Setting property "scheduler.t" to "1.5".
biodb.DEBUG[2024-11-05 05:56:22.650][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.652][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.654][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.655][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.656][rule$recomputeFrequency] t.conn=1.500000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.658][rule$recomputeFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.659][self$setFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.660][self$setFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.662][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.663][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.664][rule$recomputeFrequency] t.conn=1.500000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.666][rule$recomputeFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.667][self$setFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.668][self$setFrequency] t=1.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.672][chebi.2$setPropertyValue] Setting property "scheduler.t" to "0.5".
biodb.DEBUG[2024-11-05 05:56:22.673][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.676][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.677][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.678][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.680][rule$recomputeFrequency] t.conn=0.500000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.681][rule$recomputeFrequency] t=0.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.683][self$setFrequency] t=0.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.694][self$setFrequency] t=0.500000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.696][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.697][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.699][rule$recomputeFrequency] t.conn=0.500000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.701][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.702][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.706][chebi.2$setPropertyValue] Setting property "scheduler.t" to "2".
biodb.DEBUG[2024-11-05 05:56:22.707][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.708][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.710][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.711][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.712][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.714][rule$recomputeFrequency] t.conn=2.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.715][rule$recomputeFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.716][self$setFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.718][self$setFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.719][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.720][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.722][rule$recomputeFrequency] t.conn=2.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.723][rule$recomputeFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.724][self$setFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.726][self$setFrequency] t=2.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.729][chebi.2$setPropertyValue] Setting property "scheduler.n" to "6".
biodb.DEBUG[2024-11-05 05:56:22.731][chebi.2$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.733][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.735][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.736][o[[.notifyFct]]] Frequency changed for connector chebi.ex.1.
biodb.DEBUG[2024-11-05 05:56:22.737][rule$recomputeFrequency] t.conn=2.000000, n.conn=6.000000
biodb.DEBUG[2024-11-05 05:56:22.739][rule$recomputeFrequency] t=2.000000, n=6.000000
biodb.DEBUG[2024-11-05 05:56:22.740][self$setFrequency] t=2.000000, n=6.000000
biodb.DEBUG[2024-11-05 05:56:22.741][self$setFrequency] t=2.000000, n=6.000000
biodb.DEBUG[2024-11-05 05:56:22.743][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.744][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.746][rule$recomputeFrequency] t.conn=2.000000, n.conn=6.000000
biodb.DEBUG[2024-11-05 05:56:22.747][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.748][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.756][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:22.757][self$deleteConn] Connector "chebi.ex" deleted.
biodb.DEBUG[2024-11-05 05:56:22.759][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex.1 from the request scheduler
biodb.INFO [2024-11-05 05:56:22.760][self$deleteConn] Connector "chebi.ex.1" deleted.
biodb.INFO [2024-11-05 05:56:22.769][biodb::testThat]
biodb.INFO [2024-11-05 05:56:22.770][biodb::testThat] Running test function test.schedulerSleepTime (" Sleep time is computed correctly. ").
biodb.INFO [2024-11-05 05:56:22.771][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:22.773][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:22.777][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:22.779][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.781][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:22.782][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:22.783][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.785][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:22.786][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.788][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.791][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.792][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.794][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.796][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.797][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:22.799][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:22.800][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:22.800][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:22.800][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:22.802][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:22.803][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:22.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.806][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.807][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.811][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:22.811][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:22.812][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.815][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:22.815][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:22.816][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:22.818][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:22.819][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:22.819][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:22.820][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:22.820][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:22.822][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:22.823][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:22.829][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.831][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:22.832][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.834][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:22.836][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.837][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.839][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:22.840][self$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:22.841][chebi$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:22.843][chebi$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.845][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.846][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.848][o[[.notifyFct]]] Frequency changed for connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.849][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.851][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.852][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.853][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.855][chebi$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:22.856][chebi$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:22.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:22.858][FUN] Trying to call function notifyConnSchedulerFrequencyUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-05 05:56:22.860][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-05 05:56:22.861][o[[.notifyFct]]] Frequency changed for connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:22.862][rule$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-05 05:56:22.864][rule$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.865][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.866][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-11-05 05:56:22.918][biodb::testThat]
biodb.INFO [2024-11-05 05:56:22.920][biodb::testThat] Running test function test_directRequestToChebi (" We can send a direct request to ChEBI. ").
biodb.INFO [2024-11-05 05:56:22.921][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:22.922][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:22.925][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:22.926][self$deleteConn] Connector "chebi.ex" deleted.
biodb.INFO [2024-11-05 05:56:22.935][self$findRule] No rule exists for domain "www.ebi.ac.uk". Creating a default one.
biodb.DEBUG[2024-11-05 05:56:22.937][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.938][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:22.940][sched$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-11-05 05:56:22.943][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:22.944][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:22.946][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-11-05 05:56:24.189][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.INFO [2024-11-05 05:56:26.738][biodb::testThat]
biodb.INFO [2024-11-05 05:56:26.739][biodb::testThat] Running test function test_directRequestToUniprot (" We can send a direct request to UniProt. ").
biodb.INFO [2024-11-05 05:56:26.741][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:26.742][biodb::testThat]
biodb.INFO [2024-11-05 05:56:26.752][self$findRule] No rule exists for domain "rest.uniprot.org". Creating a default one.
biodb.DEBUG[2024-11-05 05:56:26.753][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:26.755][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:26.756][sched$sendRequest] Getting content of get URL request "https://rest.uniprot.org/uniprotkb/search?query=e&fields=id&format=tsv&size=2".
biodb.DEBUG[2024-11-05 05:56:26.760][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:26.761][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:26.764][private$doSendRequestOnce] Sent URL is "https://rest.uniprot.org/uniprotkb/search?query=e&fields=id&format=tsv&size=2".
biodb.TRACE[2024-11-05 05:56:27.486][getRCurlRequestResult] Using RCurl package for sending request (https://rest.uniprot.org/uniprotkb/search?query=e&fields=id&format=tsv&size=2).
biodb.INFO [2024-11-05 05:56:28.225][biodb::testThat]
biodb.INFO [2024-11-05 05:56:28.226][biodb::testThat] Running test function test_wrongURL (" We can handle correctly a wrong URL. ").
biodb.INFO [2024-11-05 05:56:28.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:28.229][biodb::testThat]
biodb.INFO [2024-11-05 05:56:28.234][self$findRule] No rule exists for domain "rest.kegg.jp". Creating a default one.
biodb.DEBUG[2024-11-05 05:56:28.236][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:28.237][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:28.239][sched$sendRequest] Getting content of get URL request "http://rest.kegg.jp/get/mmu00627".
biodb.DEBUG[2024-11-05 05:56:28.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:28.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:28.245][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:31.713][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:31.714][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:31.716][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:31.717][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:32.183][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:32.184][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:32.186][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:32.187][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:32.653][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:32.654][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:32.655][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:32.657][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:33.135][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:33.136][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:33.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:33.139][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:33.606][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:33.607][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:33.608][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:33.610][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:34.100][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:34.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:34.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:34.104][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:34.588][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:34.589][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:34.591][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:34.592][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:35.062][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:35.064][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:35.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:35.067][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:35.548][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:35.549][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:35.551][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:35.552][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:36.045][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:36.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:36.048][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:36.050][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:36.537][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:36.538][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:36.540][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:36.541][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:37.055][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:37.057][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:37.058][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:37.060][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:37.526][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:37.527][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:37.529][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:37.530][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:38.051][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:38.052][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:38.053][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:38.055][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:38.555][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:38.560][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:38.562][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:38.564][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:39.071][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:39.072][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:39.074][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:39.076][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:39.549][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:39.551][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:39.552][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:39.554][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:40.018][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.DEBUG[2024-11-05 05:56:40.020][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-05 05:56:40.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-05 05:56:40.023][private$doSendRequestOnce] Sent URL is "http://rest.kegg.jp/get/mmu00627".
biodb.TRACE[2024-11-05 05:56:40.539][doesRCurlRequestUrlExist] According to RCurl, URL http://rest.kegg.jp/get/mmu00627 does not exist.
biodb.TRACE[2024-11-05 05:56:40.540][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-05 05:56:40.542][getUrlRequestResult] URL "http://rest.kegg.jp/get/mmu00627" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-05 05:56:40.543][getBaseUrlRequestResult] Using base::url() for sending request (http://rest.kegg.jp/get/mmu00627).
biodb.INFO [2024-11-05 05:56:41.008][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "http://rest.kegg.jp/get/mmu00627". Retrying connection to server...
biodb.INFO [2024-11-05 05:56:41.020][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:41.021][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:41.023][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.025][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:41.035][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:41.037][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:41.042][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:41.043][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:41.045][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.050][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:41.052][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.057][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:41.058][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.063][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:41.065][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:41.066][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:41.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.071][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:41.072][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:41.074][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.079][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:41.080][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:41.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.085][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:41.087][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:41.088][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:41.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.093][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:41.095][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.100][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:41.101][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:41.102][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:41.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.107][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:41.109][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:41.110][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:41.111][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:41.113][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:41.114][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:41.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.119][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:41.121][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:41.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.126][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:41.127][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:41.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.132][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:41.134][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:41.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.139][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:41.140][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:41.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.145][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:41.147][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:41.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.152][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:41.153][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:41.158][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:41.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.163][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:41.165][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:41.166][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:41.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.171][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:41.174][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.175][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:41.177][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.178][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.180][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.181][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.182][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.184][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.185][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:41.187][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.188][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.189][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:41.191][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.192][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.194][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.195][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:41.195][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:41.195][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:41.195][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:41.195][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:41.196][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:41.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.199][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.200][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.205][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.211][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.212][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:41.215][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.216][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:41.218][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.221][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.222][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.223][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.225][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.226][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:41.228][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.229][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.230][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:41.232][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.233][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.234][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.236][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:41.236][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:41.236][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:41.236][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:41.236][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:41.237][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:41.239][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.241][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.242][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.247][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.248][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.251][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.252][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.253][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.255][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:41.258][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.259][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:41.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.264][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.265][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.267][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.268][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.269][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:41.271][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.272][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.274][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:41.275][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.276][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.278][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.279][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.281][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:41.282][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.284][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.288][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.290][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.291][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.292][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.294][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.295][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.297][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:41.299][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.301][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:41.302][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.304][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.308][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.309][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.310][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:41.312][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.313][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.315][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:41.317][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.318][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.320][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.321][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.323][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:41.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.327][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.329][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.330][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.331][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.333][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.334][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.336][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.337][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.339][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.341][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:41.342][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:41.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:41.476][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:41.478][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:41.480][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:41.482][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:41.484][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:41.486][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:41.488][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:41.490][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:41.493][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:41.495][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:41.497][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:41.499][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:41.502][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:41.504][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:41.507][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:41.509][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:41.511][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:41.513][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:41.515][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:41.517][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:41.519][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:41.521][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:41.523][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:41.525][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:41.527][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:41.529][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:41.531][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:41.533][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:41.535][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:41.537][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:41.539][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:41.541][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:41.544][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:41.546][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:41.548][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:41.550][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:41.552][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:41.554][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:41.556][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:41.558][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:41.560][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:41.562][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:41.564][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:41.566][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:41.569][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:41.571][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:41.573][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:41.575][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:41.577][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:41.579][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:41.581][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:41.584][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:41.586][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:41.588][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:41.590][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:41.592][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:41.594][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:41.596][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:41.598][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:41.600][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:41.602][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:41.604][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:41.607][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:41.609][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:41.611][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:41.613][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:41.615][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:41.617][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:41.620][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:41.622][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:41.624][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:41.626][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:41.629][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:41.631][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:41.633][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:41.635][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:41.637][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:41.639][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:41.641][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:41.644][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:41.646][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:41.648][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:41.650][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:41.652][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:41.654][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:56:41.656][biodb::testContext]
biodb.INFO [2024-11-05 05:56:41.658][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:41.659][biodb::testContext] Test context - Test definition of extensions.
biodb.INFO [2024-11-05 05:56:41.660][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:41.662][biodb::testContext]
biodb.INFO [2024-11-05 05:56:41.664][biodb::testThat]
biodb.INFO [2024-11-05 05:56:41.665][biodb::testThat] Running test function test_getReposName (" We can get the remote repository name. ").
biodb.INFO [2024-11-05 05:56:41.667][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:41.668][biodb::testThat]
biodb.INFO [2024-11-05 05:56:41.726][biodb::testThat]
biodb.INFO [2024-11-05 05:56:41.728][biodb::testThat] Running test function test_new_field (" We can define a new field. ").
biodb.INFO [2024-11-05 05:56:41.729][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:41.730][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:41.733][ef$define] Define field n_stars.
biodb.INFO [2024-11-05 05:56:41.744][biodb::testThat]
biodb.INFO [2024-11-05 05:56:41.745][biodb::testThat] Running test function test_load_definitions (" We can load definitions from a file. ").
biodb.INFO [2024-11-05 05:56:41.747][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:41.748][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:41.752][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/hmdb.yml".
biodb.DEBUG[2024-11-05 05:56:41.767][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-11-05 05:56:41.769][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.771][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.772][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.774][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.775][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.776][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.778][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.779][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.780][self$setPropertyValue] Setting property "entry.content.type" to "txt".
biodb.DEBUG[2024-11-05 05:56:41.782][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.783][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.785][self$setPropertyValue] Setting property "name" to "HMDB".
biodb.DEBUG[2024-11-05 05:56:41.786][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.787][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.789][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.790][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.792][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:41.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.795][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.801][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.805][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.806][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:41.807][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/hmdb_sec_acc_def.yml".
biodb.DEBUG[2024-11-05 05:56:41.810][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-11-05 05:56:41.812][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-11-05 05:56:41.813][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.815][self$getEntryFields()$define] Define field secondary_accessions.
biodb.INFO [2024-11-05 05:56:41.825][biodb::testThat]
biodb.INFO [2024-11-05 05:56:41.827][biodb::testThat] Running test function test_new_parsing_expr (" We can define a new parsing expression. ").
biodb.INFO [2024-11-05 05:56:41.828][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:41.830][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:41.834][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:41.836][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:41.839][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.840][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:41.842][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.843][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:41.844][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.847][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.848][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:41.850][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:41.851][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:41.853][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.854][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:41.855][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:41.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:41.858][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:41.859][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:41.859][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:41.859][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:41.861][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:41.862][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.865][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:41.866][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:41.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:41.869][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:41.870][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:41.870][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:41.871][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:41.872][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:41.874][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:41.875][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:41.875][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:41.877][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.DEBUG[2024-11-05 05:56:41.881][ef$define] Define field n_stars.
biodb.DEBUG[2024-11-05 05:56:41.888][di$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:41.890][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:41.891][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:41.896][super$initialize] Initialize connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:41.897][super$initialize] Register connector chebi.ex with the request scheduler
biodb.DEBUG[2024-11-05 05:56:41.899][private$bdb$getRequestScheduler()$re ...] Register connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:41.901][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi.ex".
biodb.DEBUG[2024-11-05 05:56:41.915][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:41.916][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-05 05:56:41.918][rule$addConnector] Connector "chebi.ex" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-11-05 05:56:41.920][self$createConn] Creating new connector chebi.ex for database class chebi.ex .
biodb.DEBUG[2024-11-05 05:56:41.922][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-11-05 05:56:41.924][conn$getEntryContent] Get ChEBI example connector entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:56:41.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-11-05 05:56:41.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-05 05:56:41.931][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi.ex-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-11-05 05:56:41.932][conn$getEntryContent] 1 ChEBI example connector entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:41.934][self$createEntryFromContent] Creating ChEBI example connector entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:41.936][self$createEntryFromContent] Parsing 1 ChEBI example connector entries.
biodb.DEBUG[2024-11-05 05:56:41.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:41.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:41.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:41.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:41.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:41.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:41.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:41.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.958][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:41.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:41.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:41.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:41.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:41.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:41.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:41.994][ef$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:41.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:41.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:41.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-11-05 05:56:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:42.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.017][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:42.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:42.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:42.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-11-05 05:56:42.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-11-05 05:56:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.ex.id.
biodb.TRACE[2024-11-05 05:56:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:42.107][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-11-05 05:56:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-11-05 05:56:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-11-05 05:56:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:42.133][biodb::testThat]
biodb.INFO [2024-11-05 05:56:42.134][biodb::testThat] Running test function test_chebiExShow (" print() method works correctly. ").
biodb.INFO [2024-11-05 05:56:42.135][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:42.137][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:42.141][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_ex.yml".
biodb.DEBUG[2024-11-05 05:56:42.143][self$getDbsInfo()$define] Define connector chebi.ex.
biodb.DEBUG[2024-11-05 05:56:42.145][self$setPropertyValue] Setting property "name" to "ChEBI example connector".
biodb.DEBUG[2024-11-05 05:56:42.146][self$setPropertyValue] Setting property "description" to "An example connector for ChEBI.".
biodb.DEBUG[2024-11-05 05:56:42.147][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:42.149][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-11-05 05:56:42.150][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.152][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.155][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.160][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.161][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:chebiAsciiName".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-11-05 05:56:42.163][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-11-05 05:56:42.164][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:42.164][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:42.164][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:42.166][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:42.167][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:42.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:42.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:42.171][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-05 05:56:42.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:42.173][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:42.175][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:42.175][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:42.176][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:42.177][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:42.179][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-11-05 05:56:42.179][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-11-05 05:56:42.180][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:42.181][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:42.183][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:42.183][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:42.184][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-11-05 05:56:42.184][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-11-05 05:56:42.185][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:42.187][self$getEntryFields()$define] Define field chebi.ex.id.
biodb.INFO [2024-11-05 05:56:42.200][biodb::testThat]
biodb.INFO [2024-11-05 05:56:42.202][biodb::testThat] Running test function test_newExtPkgSkeletonGeneration (" We can generate a skeleton for a new extension package. ").
biodb.INFO [2024-11-05 05:56:42.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:42.204][biodb::testThat]
biodb.INFO [2024-11-05 05:56:46.011][biodb::testThat]
biodb.INFO [2024-11-05 05:56:46.013][biodb::testThat] Running test function test_upgradeExtPkg (" We can upgrade the files of an extension package. ").
biodb.INFO [2024-11-05 05:56:46.014][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:46.015][biodb::testThat]
biodb.INFO [2024-11-05 05:56:46.263][private[[private$upgrader]]] Upgrade to latest version (1.4.14) of Makefile.
biodb.INFO [2024-11-05 05:56:46.588][private[[private$upgrader]]] Upgrade to latest version (1.4.14) of Makefile.
biodb.INFO [2024-11-05 05:56:46.948][private[[private$upgrader]]] Upgrade to latest version (1.4.14) of Makefile.
biodb.INFO [2024-11-05 05:56:47.011][biodb::testThat]
biodb.INFO [2024-11-05 05:56:47.012][biodb::testThat] Running test function test_useDotForCurrentDir (" We can use '.' (current directory) for the package path. ").
biodb.INFO [2024-11-05 05:56:47.014][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:47.015][biodb::testThat]
biodb.INFO [2024-11-05 05:56:47.247][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-05 05:56:47.249][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi.ex from the request scheduler
biodb.INFO [2024-11-05 05:56:47.251][self$deleteConn] Connector "chebi.ex" deleted.
biodb.DEBUG[2024-11-05 05:56:47.252][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:47.253][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.255][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:47.264][biodb::testContext]
biodb.INFO [2024-11-05 05:56:47.266][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:47.267][biodb::testContext] Test context - CompCsvFile generic tests
biodb.INFO [2024-11-05 05:56:47.268][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:47.270][biodb::testContext]
biodb.INFO [2024-11-05 05:56:47.272][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:47.275][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:47.280][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:47.281][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:47.283][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.288][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:47.289][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.294][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:47.296][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.300][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:47.302][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:47.303][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:47.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.308][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:47.309][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:47.311][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.316][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:47.317][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:47.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.322][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:47.323][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:47.325][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:47.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.330][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:47.331][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.336][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:47.337][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:47.339][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.344][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:47.345][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:47.346][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:47.348][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:47.349][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:47.350][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:47.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.355][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:47.357][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:47.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.362][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:47.363][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:47.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.368][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:47.369][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:47.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.374][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:47.376][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:47.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.381][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:47.382][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:47.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.387][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:47.389][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:47.393][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:47.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.398][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:47.400][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:47.401][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:47.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.406][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:47.409][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.410][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:47.412][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.413][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:47.414][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.415][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.417][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.431][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.432][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:47.434][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:47.436][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.437][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:47.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:47.441][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.442][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.444][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:47.444][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.444][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.444][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:47.444][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:47.445][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:47.447][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.448][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.450][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:47.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.454][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.455][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.456][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:47.458][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:47.459][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.460][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.462][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:47.464][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.466][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:47.467][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.469][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:47.470][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.472][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.473][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.475][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.476][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:47.478][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:47.480][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.481][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:47.483][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:47.484][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.486][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.487][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:47.487][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.487][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.487][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:47.487][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:47.488][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:47.490][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.492][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:47.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.497][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.499][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:47.500][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:47.501][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.503][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.504][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:47.507][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.508][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:47.510][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:47.512][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.514][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.515][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.516][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.518][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:47.519][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:47.521][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.522][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:47.523][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:47.525][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.526][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.527][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.529][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:47.530][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.531][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.533][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:47.534][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.535][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.536][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.538][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.539][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:47.540][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:47.541][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.543][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.544][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:47.547][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.548][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:47.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.551][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:47.552][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.554][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.555][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.556][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.558][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:47.559][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:47.560][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.562][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:47.563][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:47.564][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.566][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:47.567][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.568][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:47.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.572][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:47.574][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:47.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:47.576][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:47.577][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.579][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:47.580][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:47.581][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:47.582][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:47.584][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:47.586][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.692][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:47.694][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:47.696][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:47.698][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:47.699][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:47.701][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:47.703][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:47.705][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:47.707][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:47.709][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:47.711][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:47.713][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:47.715][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:47.717][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:47.719][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:47.721][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:47.723][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:47.725][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:47.727][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:47.729][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:47.731][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:47.733][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:47.735][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:47.737][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:47.739][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:47.741][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:47.743][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:47.745][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:47.746][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:47.748][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:47.750][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:47.752][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:47.754][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:47.756][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:47.758][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:47.760][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:47.762][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:47.764][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:47.766][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:47.768][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:47.770][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:47.772][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:47.774][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:47.776][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:47.778][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:47.779][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:47.781][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:47.783][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:47.785][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:47.788][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:47.790][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:47.792][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:47.793][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:47.795][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:47.797][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:47.799][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:47.801][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:47.803][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:47.805][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:47.807][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:47.809][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:47.811][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:47.812][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:47.814][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:47.827][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:47.829][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:47.832][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:47.834][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:47.836][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:47.839][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:47.841][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:47.843][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:47.845][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:47.847][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:47.849][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:47.851][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:47.853][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:47.855][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:47.857][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:47.859][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:47.861][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:47.863][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:47.865][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:47.867][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:47.869][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:47.874][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:47.876][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2024-11-05 05:56:47.884][biodb::testThat]
biodb.INFO [2024-11-05 05:56:47.886][biodb::testThat] Running test function test_cache_for_local_db (" We can use the cache system for a local database. ").
biodb.INFO [2024-11-05 05:56:47.887][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:47.888][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:47.891][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:56:47.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:47.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:47.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:47.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:47.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:47.900][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2024-11-05 05:56:47.903][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-05 05:56:47.906][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2024-11-05 05:56:47.908][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e" for "comp.csv.file-b51027d8b03dcf9cbf719d053509462e".
biodb.TRACE[2024-11-05 05:56:47.909][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-05 05:56:47.911][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:56:47.912][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:47.914][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:56:47.915][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:47.916][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:47.918][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.INFO [2024-11-05 05:56:47.919][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:56:47.922][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.929][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.931][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.938][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.938][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.940][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:47.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.947][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.947][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.947][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.949][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.955][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.955][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.955][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.955][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.957][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:47.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.964][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.964][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.964][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.964][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.964][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:47.966][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:47.973][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:47.975][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:47.982][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:47.984][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:56:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:47.991][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:47.998][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O
biodb.TRACE[2024-11-05 05:56:48.002][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-b51027d8b03dcf9cbf719d053509462e/15939.tsv"
biodb.DEBUG[2024-11-05 05:56:48.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:56:48.005][self$createEntryFromContent] Creating Compound CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:56:48.007][self$createEntryFromContent] Parsing 2 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:48.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:48.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:48.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:48.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:48.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.020][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.022][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.023][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.025][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.027][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.028][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.030][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:48.031][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:56:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:48.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:48.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:48.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:48.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:48.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:48.365][self$createEntryFromContent] Accession numbers: 1018, 15939.
biodb.TRACE[2024-11-05 05:56:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:48.486][bdb$getConfig()$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:48.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:48.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:48.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:48.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:48.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:48.498][biodb::testThat]
biodb.INFO [2024-11-05 05:56:48.500][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-11-05 05:56:48.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:48.502][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:48.506][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/entry-comp.csv.file-1018-content.tsv".
biodb.DEBUG[2024-11-05 05:56:48.508][biodb$getFactory()$createEntryFromCo ...] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:48.510][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:48.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:48.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:48.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:48.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:48.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:48.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.601][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:48.680][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 1018.
biodb.TRACE[2024-11-05 05:56:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:48.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.860][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:48.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.898][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.899][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.902][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.939][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:49.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:49.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.135][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:49.136][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:49.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:49.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:49.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:49.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:49.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.203][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:49.214][biodb::testThat]
biodb.INFO [2024-11-05 05:56:49.216][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-05 05:56:49.217][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:49.218][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:49.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:49.247][biodb::testThat]
biodb.INFO [2024-11-05 05:56:49.249][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-05 05:56:49.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:49.251][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:49.256][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.260][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.262][function(conn, opt)] Testing searchForEntries() with entry "1018" and field "name".
biodb.TRACE[2024-11-05 05:56:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.299][function(conn, opt)] With value "2-Aminoethylarsonate".
biodb.DEBUG[2024-11-05 05:56:49.303][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.305][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.310][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.312][function(conn, opt)] With found IDs [1]: "1018".
biodb.TRACE[2024-11-05 05:56:49.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.335][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.340][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.341][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:49.343][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:49.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.347][ef$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:49.349][ef$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.352][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:49.358][biodb::testThat]
biodb.INFO [2024-11-05 05:56:49.359][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-11-05 05:56:49.361][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:49.362][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.495][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.498][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.503][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:49.528][biodb::testThat]
biodb.INFO [2024-11-05 05:56:49.529][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-11-05 05:56:49.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:49.532][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:49.569][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:49.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.625][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.631][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:49.634][biodb::testThat]
biodb.INFO [2024-11-05 05:56:49.636][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-11-05 05:56:49.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:49.638][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.715][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.717][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.721][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.747][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.749][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:49.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.817][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.821][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.824][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2024-11-05 05:56:49.827][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:49.858][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.860][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.869][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.917][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2024-11-05 05:56:49.920][private$selectByRange] 1 values to filter on field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:49.949][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:49.951][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:49.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:49.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.960][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:49.963][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.042].
biodb.DEBUG[2024-11-05 05:56:49.965][private$selectByRange] 1 values to filter on field molecular.mass.
biodb.TRACE[2024-11-05 05:56:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.025][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.027][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97202].
biodb.DEBUG[2024-11-05 05:56:50.030][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:50.061][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:50.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:50.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:50.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.072][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.075][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97202].
biodb.DEBUG[2024-11-05 05:56:50.078][private$selectByRange] 1 values to filter on field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:50.107][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2024-11-05 05:56:50.109][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:50.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:50.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.118][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.121][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97204].
biodb.DEBUG[2024-11-05 05:56:50.124][private$selectByRange] 1 values to filter on field monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:50.163][biodb::testThat]
biodb.INFO [2024-11-05 05:56:50.164][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-11-05 05:56:50.166][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:50.167][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.211][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.215][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.218][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2024-11-05 05:56:50.221][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:50.224][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:50.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.245][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.247][private$selectFields]
biodb.TRACE[2024-11-05 05:56:50.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:50.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:50.251][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.252][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.254][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.258][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.259][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.263][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.265][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.266][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.268][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.272][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:50.291][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:50.292][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.436][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.439][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2024-11-05 05:56:50.441][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:50.445][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:50.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.465][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.466][private$selectFields]
biodb.TRACE[2024-11-05 05:56:50.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:50.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:50.470][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.472][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.473][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.477][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.479][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.483][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.484][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.485][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.487][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.491][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:50.511][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:50.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:50.534][biodb::testThat]
biodb.INFO [2024-11-05 05:56:50.535][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-11-05 05:56:50.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:50.538][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.588][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.590][private$selectByRange] Filtering on field "molecular.mass", with range: [169.00946482, 169.01453518].
biodb.DEBUG[2024-11-05 05:56:50.593][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:50.597][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:50.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.616][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.618][private$selectFields]
biodb.TRACE[2024-11-05 05:56:50.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:50.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:50.621][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.623][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.624][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.628][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.630][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.634][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.635][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.636][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.638][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.642][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:50.661][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:50.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.727][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.730][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96947541985, 168.97454458015].
biodb.DEBUG[2024-11-05 05:56:50.732][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:50.736][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:50.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.756][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.757][private$selectFields]
biodb.TRACE[2024-11-05 05:56:50.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:50.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:50.761][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.762][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.764][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.768][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.769][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.773][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.774][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.776][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.777][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.781][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:50.801][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:50.802][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:50.824][biodb::testThat]
biodb.INFO [2024-11-05 05:56:50.825][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-11-05 05:56:50.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:50.828][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:50.832][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:50.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.881][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:50.884][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2024-11-05 05:56:50.887][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:50.890][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:50.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:50.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:50.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:50.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:50.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.910][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.912][private$selectFields]
biodb.TRACE[2024-11-05 05:56:50.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:50.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:50.915][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.917][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.918][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.922][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.924][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.928][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.929][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:50.930][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.932][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.936][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:50.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:50.955][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:50.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.024][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.027][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2024-11-05 05:56:51.030][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:51.034][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:51.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.054][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.056][private$selectFields]
biodb.TRACE[2024-11-05 05:56:51.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:56:51.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:51.060][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.061][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.063][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.065][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.067][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.068][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.071][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.072][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.074][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.075][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.077][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.081][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2024-11-05 05:56:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2024-11-05 05:56:51.113][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:51.115][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:51.154][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.156][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-11-05 05:56:51.157][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.158][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:51.161][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-11-05 05:56:51.162][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:51.164][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:56:51.166][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:51.167][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:51.168][private$doGetEntryContentFromDb] Entry id: WRONGA
biodb.DEBUG[2024-11-05 05:56:51.173][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:51.176][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:51.177][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:51.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.231][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:51.233][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-05 05:56:51.243][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.245][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-11-05 05:56:51.246][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.248][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:51.269][function(conn, opt)] IDS: [3]: "WRONGB, 1018, 15939"
biodb.DEBUG[2024-11-05 05:56:51.271][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-11-05 05:56:51.273][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:51.275][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2024-11-05 05:56:51.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:51.278][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:51.279][private$doGetEntryContentFromDb] Entry id: WRONGB
biodb.DEBUG[2024-11-05 05:56:51.284][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:51.287][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:51.289][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:51.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.346][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:51.347][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-05 05:56:51.349][function(conn, opt)] Entries: [3]: "NULL, <environment>, <environment>"
biodb.INFO [2024-11-05 05:56:51.367][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.369][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-11-05 05:56:51.370][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.371][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.400][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.402][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-11-05 05:56:51.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.405][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.419][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.420][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-11-05 05:56:51.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.423][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.439][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.441][biodb::testThat] Running test function test.db.editing (" We can edit a database. ").
biodb.INFO [2024-11-05 05:56:51.442][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.444][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:51.451][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:51.453][conn$getBiodb()$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file .
biodb.TRACE[2024-11-05 05:56:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.482][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:56:51.483][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:51.486][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:51.487][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:51.489][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:51.491][private$doGetEntryContentFromDb] Entry id: 1018
biodb.INFO [2024-11-05 05:56:51.493][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:56:51.495][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.504][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:51.507][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:51.510][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:51.512][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:51.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:51.581][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:51.582][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:56:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:51.627][conn.2$getBiodb()$getFactory()$delet ...] Connector "comp.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:56:51.633][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.634][biodb::testThat] Running test function test.create.conn.with.same.url (" Creating another connector with the same URL is forbidden. ").
biodb.INFO [2024-11-05 05:56:51.636][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.637][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:51.645][super$initialize] Initialize connector comp.csv.file.1.
biodb.ERROR[2024-11-05 05:56:51.647][conn$getBiodb()$getFactory()$createConn] A connector (comp.csv.file) already exists for database comp.csv.file with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract.tsv).
biodb.INFO [2024-11-05 05:56:51.668][biodb::testThat]
biodb.INFO [2024-11-05 05:56:51.669][biodb::testThat] Running test function test.db.writing (" Database writing works. ").
biodb.INFO [2024-11-05 05:56:51.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:51.672][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:51.677][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:51.679][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file .
biodb.ERROR[2024-11-05 05:56:51.681][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:56:51.722][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:51.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:51.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:51.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:51.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:51.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.754][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:51.755][private$selectFields]
biodb.TRACE[2024-11-05 05:56:51.757][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:51.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:51.759][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:51.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:51.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:51.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:51.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.797][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.798][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:51.799][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:51.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.803][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.805][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.809][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.810][private$organizeFieldsByGroups] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:51.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.817][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:51.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.827][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.837][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:51.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:51.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.842][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:51.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:51.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.847][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.848][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:51.850][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.852][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.854][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.855][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.858][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.859][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "description", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:51.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:51.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.001][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, ...] [1018, C2H8AsNO3, 168.97201, 169.012, C07279, ...].
biodb.DEBUG[2024-11-05 05:56:52.031][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:52.032][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:56:52.034][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:52.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:52.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:52.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:52.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:52.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:52.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:52.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.065][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:52.066][private$selectFields]
biodb.TRACE[2024-11-05 05:56:52.068][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:52.069][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:52.070][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.072][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.103][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.109][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.110][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.114][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.116][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.120][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.121][private$organizeFieldsByGroups] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.149][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.160][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.161][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.165][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.166][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.170][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "description", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, ...] [1018, C2H8AsNO3, 168.97201, 169.012, C07279, ...].
biodb.DEBUG[2024-11-05 05:56:52.342][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:52.343][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.367][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:56:52.369][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:52.371][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "NA".
biodb.DEBUG[2024-11-05 05:56:52.372][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:52.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:52.375][private$doGetEntryContentFromDb] Entry id: 1018
biodb.INFO [2024-11-05 05:56:52.376][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:56:52.378][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.386][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:52.389][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:52.391][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:52.393][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:52.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:52.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:52.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:52.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:52.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.447][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:52.449][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.ERROR[2024-11-05 05:56:52.457][private$checkEditingIsAllowed] Editing is not enabled for this database. However this database type is editable. Please call allowEditing() method to enable editing.
biodb.TRACE[2024-11-05 05:56:52.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:56:52.528][conn.2$addNewEntry] Impossible to add entry as a new entry. The passed entry is already part of a connector.
biodb.ERROR[2024-11-05 05:56:52.557][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:56:52.576][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:52.577][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:52.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.ERROR[2024-11-05 05:56:52.580][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.INFO [2024-11-05 05:56:52.597][private$doWrite] Write all entries into "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:52.600][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:52.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:52.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:52.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:52.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:52.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.634][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:52.636][private$selectFields]
biodb.TRACE[2024-11-05 05:56:52.637][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:52.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:52.640][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.642][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.672][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.684][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.686][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.690][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.692][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.694][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.696][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.697][private$organizeFieldsByGroups] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:52.699][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.706][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.751][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.753][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.757][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.759][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.763][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "description", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:52.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:52.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, ...] [1018, C2H8AsNO3, 168.97201, 169.012, C07279, ...].
biodb.DEBUG[2024-11-05 05:56:52.921][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:52.922][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:56:52.930][biodb$getFactory()$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:56:52.935][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:52.937][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.csv.file.db".
biodb.TRACE[2024-11-05 05:56:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.956][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:56:52.957][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:52.959][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:52.961][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:52.962][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:52.963][private$doGetEntryContentFromDb] Entry id: 1018
biodb.INFO [2024-11-05 05:56:52.965][private$initDb] Loading file database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:52.967][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.975][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:52.977][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.984][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:52.984][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:52.986][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:52.993][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:52.993][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:52.993][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:52.995][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.003][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.003][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.003][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.003][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.005][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.012][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.012][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.012][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.012][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.012][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.015][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.022][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.025][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.032][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.034][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:56:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.042][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.044][self$setField] Set field comp.csv.file.id to column(s) comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.053][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.059][private$doGetEntryContentFromDb] Content of first entry: accession formula monoisotopic.mass molecular.mass kegg.compound.id name smiles description comp.csv.file.id
1018 C2H8AsNO3 168.97201 169.012 C07279 2-Aminoethylarsonate NCC[As](O)(O)=O NA 1018
biodb.DEBUG[2024-11-05 05:56:53.062][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:53.064][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:53.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:53.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:53.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:53.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:53.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.077][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.079][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.081][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.082][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.084][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.086][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.087][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.089][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:53.090][self$setPropertyValue] Setting property "parsing.expr" to "comp.csv.file.id".
biodb.TRACE[2024-11-05 05:56:53.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:53.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.277][self$createEntryFromContent] Accession numbers: 1018.
biodb.INFO [2024-11-05 05:56:53.281][biodb$getFactory()$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:56:53.287][biodb::testThat]
biodb.INFO [2024-11-05 05:56:53.289][biodb::testThat] Running test function test.db.writing.with.col.add (" We can write entries having new fields. ").
biodb.INFO [2024-11-05 05:56:53.290][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:53.292][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:53.299][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:53.301][conn$getBiodb()$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.comp.csv.file.db".
biodb.TRACE[2024-11-05 05:56:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.331][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:56:53.332][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:53.334][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:53.336][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:53.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:53.338][private$doGetEntryContentFromDb] Entry id: 1018
biodb.INFO [2024-11-05 05:56:53.340][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:56:53.342][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.349][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:53.352][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:53.354][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:53.356][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:53.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:53.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:53.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:53.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:53.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.410][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:53.411][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:56:53.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.456][conn.2$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:53.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:53.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:53.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:53.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:53.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:53.464][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:53.466][private$selectFields]
biodb.TRACE[2024-11-05 05:56:53.467][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:53.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:53.469][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:53.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.480][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.496][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.497][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:53.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:53.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.508][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.509][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.513][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.515][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.531][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:53.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.555][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:53.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.601][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.606][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.608][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.613][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.615][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.628][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.646][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.650][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.652][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.656][private$selectFields] Fields [6]: "accession, formula, monoisotopic.mass, molecular.mass, smiles, description"
biodb.TRACE[2024-11-05 05:56:53.657][private$organizeFieldsByGroups] Fields [6]: "accession, formula, monoisotopic.mass, molecular.mass, smiles, description"
biodb.TRACE[2024-11-05 05:56:53.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.686][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.688][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.692][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "smiles", "description"), list()"
biodb.TRACE[2024-11-05 05:56:53.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 6]: [accession, formula, monoisotopic.mass, molecular.mass, smiles, ...] [1018, C2H8AsNO3, 168.97201, 169.012, NCC[As](O)(O)=O, ...].
biodb.DEBUG[2024-11-05 05:56:53.802][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:53.804][conn.2$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:56:53.806][fields.def$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:53.807][fields.def$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:53.809][fields.def$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.810][fields.def$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.851][private$loadEntries] Creating entries from ids [1]: "anewentry".
biodb.DEBUG[2024-11-05 05:56:53.853][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:53.854][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:53.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:53.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:53.859][private$doGetEntryContentFromDb] Entry id: anewentry
biodb.DEBUG[2024-11-05 05:56:53.861][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:56:53.864][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:53.865][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:53.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:53.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:53.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:53.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:53.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:53.920][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:56:53.922][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:56:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:53.952][private$doWrite] Write all entries into "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.comp.csv.file.db".
biodb.DEBUG[2024-11-05 05:56:53.954][self$getBiodb()$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:56:53.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:53.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:53.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:53.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:53.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:53.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:53.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.986][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:53.988][private$selectFields]
biodb.TRACE[2024-11-05 05:56:53.989][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:53.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:53.992][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:53.993][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:53.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:53.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:53.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:53.998][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.025][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.028][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.049][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.050][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.055][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.056][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.060][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:54.062][private$organizeFieldsByGroups] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:54.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.073][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.080][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.085][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.091][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.102][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.103][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.107][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.109][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.113][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "description", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, ...] [1018, C2H8AsNO3, 168.97201, 169.012, C07279, ...].
biodb.DEBUG[2024-11-05 05:56:54.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:54.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:54.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:54.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:54.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:54.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.307][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:54.308][private$selectFields]
biodb.TRACE[2024-11-05 05:56:54.309][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:54.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:54.312][private$selectFields] Fields [10]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id, aa.seq"
biodb.TRACE[2024-11-05 05:56:54.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.318][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.319][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.340][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.341][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.345][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.353][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.354][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.359][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.360][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.365][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.366][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.371][private$selectFields] Fields [10]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id, aa.seq"
biodb.TRACE[2024-11-05 05:56:54.372][private$organizeFieldsByGroups] Fields [10]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, description, comp.csv.file.id, aa.seq"
biodb.TRACE[2024-11-05 05:56:54.374][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.380][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.384][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.409][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.414][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.433][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.435][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.441][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.443][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.448][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.450][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.455][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "description", "comp.csv.file.id", "aa.seq"), list()"
biodb.TRACE[2024-11-05 05:56:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.623][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.634][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, ...] [anewentry, C2H8AsNO3, 168.97201, 169.012, C07279, ...].
biodb.DEBUG[2024-11-05 05:56:54.649][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:56:54.650][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:56:54.654][conn.2$getBiodb()$getFactory()$delet ...] Connector "comp.csv.file.1" deleted.
biodb.TRACE[2024-11-05 05:56:54.659][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:54.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.669][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:54.672][biodb::testThat]
biodb.INFO [2024-11-05 05:56:54.674][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-11-05 05:56:54.675][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:54.676][biodb::testThat]
biodb.ERROR[2024-11-05 05:56:54.696][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-11-05 05:56:54.721][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-11-05 05:56:54.740][biodb::testContext]
biodb.INFO [2024-11-05 05:56:54.741][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:54.742][biodb::testContext] Test context - CompCsvFile specific tests
biodb.INFO [2024-11-05 05:56:54.744][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:54.745][biodb::testContext]
biodb.INFO [2024-11-05 05:56:54.747][biodb::testThat]
biodb.INFO [2024-11-05 05:56:54.748][biodb::testThat] Running test function test_unmapped_col (" We receive a warning for unmapped columns. ").
biodb.INFO [2024-11-05 05:56:54.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:54.751][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:54.756][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:54.758][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.INFO [2024-11-05 05:56:54.760][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:54.763][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.770][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.WARN [2024-11-05 05:56:54.772][private$autoSetFields] Column "elecCharge" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:56:54.774][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.781][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.781][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.783][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.790][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.790][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.790][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.792][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.799][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.799][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.799][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.799][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.801][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.808][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.808][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.808][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.808][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.808][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.810][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.817][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:54.818][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:54.826][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.INFO [2024-11-05 05:56:54.841][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:56:54.857][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:54.859][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.INFO [2024-11-05 05:56:54.861][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:54.864][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.872][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.874][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.882][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.882][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.884][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.891][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.891][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.891][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.893][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.900][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.900][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.900][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.900][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.902][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.909][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.909][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.909][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.909][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.909][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.911][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:54.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.918][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:54.920][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:54.927][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.INFO [2024-11-05 05:56:54.930][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:56:54.935][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:54.936][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.INFO [2024-11-05 05:56:54.938][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:54.941][conn$setField] Set field charge to column(s) elecCharge.
biodb.TRACE[2024-11-05 05:56:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.948][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.950][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.957][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.957][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.959][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.966][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.966][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.966][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.968][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.976][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.976][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.976][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.976][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.977][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.985][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.985][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.985][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.985][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.985][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.987][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:54.995][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:54.997][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.004][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.006][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.013][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.INFO [2024-11-05 05:56:55.018][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:56:55.024][biodb::testThat]
biodb.INFO [2024-11-05 05:56:55.025][biodb::testThat] Running test function test.comp.csv.file.dynamic.field.set (" We can define a new field even after loading an entry. ").
biodb.INFO [2024-11-05 05:56:55.026][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:55.028][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:55.033][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:55.035][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:55.037][private$loadEntries] Creating entries from ids [1]: "1932".
biodb.DEBUG[2024-11-05 05:56:55.038][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:55.040][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:55.042][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:55.043][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:55.045][private$doGetEntryContentFromDb] Entry id: 1932
biodb.INFO [2024-11-05 05:56:55.046][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:55.049][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:56:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.056][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.WARN [2024-11-05 05:56:55.058][private$autoSetFields] Column "elecCharge" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:56:55.060][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.067][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.067][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.069][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.076][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.076][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.076][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.078][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.085][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.085][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.085][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.085][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.087][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.095][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.095][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.095][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.095][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.095][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.096][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.104][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.105][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.113][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.118][private$doGetEntryContentFromDb] Content of first entry: accession elecCharge formula monoisotopic.mass molecular.mass kegg.compound.id name smiles
1932 0 C6H6NR 92.05002 92.119 C03084 4-Substituted aniline Nc1ccc([*])cc1
biodb.DEBUG[2024-11-05 05:56:55.120][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:55.122][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:55.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:55.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:55.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:55.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:55.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.135][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.136][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.138][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.140][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.141][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.143][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.145][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2024-11-05 05:56:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.298][self$createEntryFromContent] Accession numbers: 1932.
biodb.TRACE[2024-11-05 05:56:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.324][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:55.325][private$selectFields]
biodb.TRACE[2024-11-05 05:56:55.327][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:55.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:55.329][private$selectFields] Fields [8]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.336][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.370][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.372][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.376][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.398][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.399][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.401][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.405][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.410][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.414][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.416][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.417][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.421][private$selectFields] Fields [8]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.423][private$organizeFieldsByGroups] Fields [8]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.424][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.430][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.441][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.452][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.463][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.465][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.469][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.622][conn$setField] Set field charge to column(s) elecCharge.
biodb.TRACE[2024-11-05 05:56:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:55.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:55.630][self$setPropertyValue] Setting property "parsing.expr" to "elecCharge".
biodb.INFO [2024-11-05 05:56:55.632][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-faea223077e5b5702767b3c58422e777" for "comp.csv.file-faea223077e5b5702767b3c58422e777".
biodb.DEBUG[2024-11-05 05:56:55.633][private$loadEntries] Creating entries from ids [1]: "1932".
biodb.DEBUG[2024-11-05 05:56:55.635][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:56:55.637][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_with_unknown_column.tsv".
biodb.DEBUG[2024-11-05 05:56:55.638][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:55.639][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:56:55.641][private$doGetEntryContentFromDb] Entry id: 1932
biodb.DEBUG[2024-11-05 05:56:55.646][private$doGetEntryContentFromDb] Content of first entry: accession elecCharge formula monoisotopic.mass molecular.mass kegg.compound.id name smiles
1932 0 C6H6NR 92.05002 92.119 C03084 4-Substituted aniline Nc1ccc([*])cc1
biodb.DEBUG[2024-11-05 05:56:55.648][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:55.650][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2024-11-05 05:56:55.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:55.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:55.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:55.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:55.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:55.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:55.825][self$createEntryFromContent] Accession numbers: 1932.
biodb.TRACE[2024-11-05 05:56:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:55.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:55.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:55.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.851][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:56:55.852][private$selectFields]
biodb.TRACE[2024-11-05 05:56:55.853][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:56:55.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:56:55.856][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, charge, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.858][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.874][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.879][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.885][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.891][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.897][ef$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:55.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.902][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.904][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.913][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.929][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.930][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.936][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.947][ef$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:55.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:55.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.952][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.954][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:55.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.958][private$selectFields] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, charge, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.960][private$organizeFieldsByGroups] Fields [9]: "accession, formula, monoisotopic.mass, molecular.mass, kegg.compound.id, name, smiles, charge, comp.csv.file.id"
biodb.TRACE[2024-11-05 05:56:55.961][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:55.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:55.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:55.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:55.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:55.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:55.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:55.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:55.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:55.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:55.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:55.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:55.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.000][ef$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:56.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.005][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.007][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.011][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "monoisotopic.mass", "molecular.mass", "kegg.compound.id", "name", "smiles", "charge", "comp.csv.file.id"), list()"
biodb.TRACE[2024-11-05 05:56:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:56.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:56.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:56.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:56.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:56.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:56.193][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:56:56.199][biodb::testThat]
biodb.INFO [2024-11-05 05:56:56.200][biodb::testThat] Running test function test_comp.csv.file_wrong_field (" We can redefine wrongly mapped field. ").
biodb.INFO [2024-11-05 05:56:56.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:56.203][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:56.209][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:56.210][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_custom.csv".
biodb.INFO [2024-11-05 05:56:56.214][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_custom.csv".
biodb.WARN [2024-11-05 05:56:56.218][private$autoSetFields] Column "ID" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:56:56.219][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.227][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.229][self$setField] Set field molecular.mass to column(s) mass.
biodb.TRACE[2024-11-05 05:56:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.236][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.236][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.WARN [2024-11-05 05:56:56.237][private$autoSetFields] Column "molmass" does not match any biodb field.
biodb.WARN [2024-11-05 05:56:56.239][private$autoSetFields] Column "kegg" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:56:56.241][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.248][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.248][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.248][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.250][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.257][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.257][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.257][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.257][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.259][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:56:56.261][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.266][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.266][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.266][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.266][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.266][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:56.273][compdb$setField] Set field accession to column(s) ID.
biodb.TRACE[2024-11-05 05:56:56.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:56.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:56.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:56.281][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.282][compdb$setField] Set field kegg.compound.id to column(s) kegg.
biodb.TRACE[2024-11-05 05:56:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.290][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.ERROR[2024-11-05 05:56:56.292][compdb$setField] Field "molecular.mass" is already set to "mass".
biodb.INFO [2024-11-05 05:56:56.307][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:56:56.311][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2024-11-05 05:56:56.313][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_custom.csv".
biodb.INFO [2024-11-05 05:56:56.315][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/chebi_extract_custom.csv".
biodb.DEBUG[2024-11-05 05:56:56.318][compdb$setField] Set field accession to column(s) ID.
biodb.TRACE[2024-11-05 05:56:56.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.325][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.326][compdb$setField] Set field kegg.compound.id to column(s) kegg.
biodb.TRACE[2024-11-05 05:56:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.334][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.334][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.335][compdb$setField] Set field monoisotopic.mass to column(s) mass.
biodb.TRACE[2024-11-05 05:56:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.343][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.343][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.343][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.345][compdb$setField] Set field molecular.mass to column(s) molmass.
biodb.TRACE[2024-11-05 05:56:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.352][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.352][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.352][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.352][self$setPropertyValue] Setting property "parsing.expr" to "molmass".
biodb.DEBUG[2024-11-05 05:56:56.354][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:56:56.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.361][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.361][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.361][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.361][self$setPropertyValue] Setting property "parsing.expr" to "molmass".
biodb.DEBUG[2024-11-05 05:56:56.361][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.363][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:56:56.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "molmass".
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.370][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.372][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:56:56.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "molmass".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.379][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.381][self$setField] Set field description to column(s) description.
biodb.TRACE[2024-11-05 05:56:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "ID".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "kegg".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "mass".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "molmass".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:56.388][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2024-11-05 05:56:56.404][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:56:56.406][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.INFO [2024-11-05 05:56:56.408][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:56:56.409][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:56:56.410][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.412][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:56.425][biodb::testContext]
biodb.INFO [2024-11-05 05:56:56.426][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:56.428][biodb::testContext] Test context - CompSqlite generic tests
biodb.INFO [2024-11-05 05:56:56.429][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:56:56.430][biodb::testContext]
biodb.INFO [2024-11-05 05:56:56.433][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:56.435][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:56:56.440][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:56.442][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:56:56.443][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.448][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:56:56.450][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.455][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:56:56.457][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.462][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:56:56.463][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:56:56.465][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:56:56.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.470][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:56:56.471][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:56:56.473][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.478][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:56:56.479][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:56.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.484][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:56:56.486][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:56:56.498][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:56:56.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.504][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:56:56.506][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.512][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:56:56.513][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:56:56.515][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:56:56.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.520][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:56.522][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:56:56.523][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:56:56.525][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:56:56.526][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:56:56.528][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:56:56.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.533][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:56:56.534][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:56:56.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.539][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:56:56.541][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:56:56.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.546][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:56:56.547][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:56:56.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.552][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:56:56.554][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:56:56.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.559][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:56:56.560][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:56:56.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.566][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:56:56.567][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:56:56.572][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:56:56.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.578][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:56:56.579][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:56:56.581][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:56:56.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.586][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:56:56.589][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.590][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:56:56.592][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.593][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:56.594][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.596][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.597][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.599][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.600][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:56.602][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:56.603][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.605][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:56:56.606][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:56.608][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.609][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.611][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:56.611][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:56.611][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:56.611][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:56.611][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:56.612][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:56.614][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.616][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:56.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.620][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.622][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.623][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:56.624][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:56.626][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.627][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.629][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:56.631][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.633][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:56.634][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.636][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:56.637][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.640][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.641][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.642][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:56.644][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:56.645][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.647][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:56:56.648][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:56.649][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.651][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.652][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:56:56.652][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:56.652][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:56.652][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:56.652][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:56.654][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:56.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.658][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:56.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.662][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.663][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.664][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:56.666][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:56.667][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.669][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.670][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:56:56.673][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.674][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:56:56.676][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.677][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:56.678][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.680][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.681][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.684][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:56:56.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:56.687][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.688][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:56:56.690][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:56.691][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.693][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.694][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.696][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:56.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.698][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.700][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:56.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.704][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.705][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.707][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:56.708][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:56.709][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.711][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.712][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:56:56.715][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.716][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:56:56.718][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:56:56.721][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.722][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.723][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.725][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.726][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:56:56.728][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:56:56.729][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.731][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:56:56.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:56:56.734][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.735][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:56:56.736][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.738][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:56:56.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.741][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.742][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:56:56.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:56:56.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:56:56.746][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:56:56.747][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.749][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:56:56.750][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:56:56.751][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:56:56.753][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:56:56.755][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:56:56.756][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:56.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:56.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:56.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:56.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:56.869][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:56:56.871][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:56:56.873][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:56:56.875][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:56:56.877][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:56:56.879][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:56:56.881][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:56.883][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:56.885][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:56:56.887][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:56:56.900][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:56:56.902][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:56:56.905][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:56:56.907][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:56:56.910][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:56:56.912][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:56:56.914][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:56:56.916][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:56:56.919][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:56:56.921][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:56:56.923][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:56:56.925][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:56:56.927][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:56:56.929][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:56:56.931][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:56:56.933][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:56:56.935][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:56:56.938][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:56:56.940][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:56:56.942][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:56:56.944][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:56:56.946][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:56:56.948][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:56:56.950][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:56:56.952][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:56:56.954][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:56:56.956][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:56:56.958][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:56:56.960][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:56:56.962][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:56:56.964][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:56:56.966][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:56:56.968][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:56:56.970][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:56:56.972][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:56:56.974][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:56:56.976][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:56:56.978][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:56:56.980][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:56:56.982][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:56:56.984][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:56:56.986][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:56:56.988][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:56:56.990][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:56:56.992][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:56:56.994][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:56:56.996][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:56:56.998][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:56:57.000][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:56:57.002][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:56:57.004][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:56:57.006][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:56:57.008][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:56:57.010][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:56:57.012][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:56:57.014][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:56:57.016][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:56:57.018][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:56:57.020][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:56:57.022][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:56:57.024][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:56:57.026][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:56:57.028][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:56:57.030][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:56:57.032][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:56:57.034][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:56:57.036][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:56:57.038][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:56:57.040][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:56:57.042][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:56:57.044][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:56:57.046][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:56:57.048][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:56:57.050][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:56:57.052][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:56:57.064][super$initialize] Initialize connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:56:57.066][biodb$getFactory()$createConn] Creating new connector comp.sqlite for database class comp.sqlite , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/chebi_extract.sqlite".
biodb.INFO [2024-11-05 05:56:57.070][biodb::testThat]
biodb.INFO [2024-11-05 05:56:57.072][biodb::testThat] Running test function test_cache_for_local_db (" We can use the cache system for a local database. ").
biodb.INFO [2024-11-05 05:56:57.073][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:57.075][biodb::testThat]
biodb.DEBUG[2024-11-05 05:56:57.077][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:56:57.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:57.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:57.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:57.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:57.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:56:57.086][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:56:57.089][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:56:57.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2024-11-05 05:56:57.094][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.sqlite-e8dea48970489d0239361429505f8379" for "comp.sqlite-e8dea48970489d0239361429505f8379".
biodb.TRACE[2024-11-05 05:56:57.096][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-05 05:56:57.097][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:56:57.099][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:56:57.100][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2024-11-05 05:56:57.102][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:56:57.103][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:56:57.112][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2024-11-05 05:56:57.114][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.119][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2024-11-05 05:56:57.121][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.128][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:56:57.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:57.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:57.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:57.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/comp.sqlite-e8dea48970489d0239361429505f8379/1018.json"
biodb.DEBUG[2024-11-05 05:56:57.146][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:56:57.148][self$createEntryFromContent] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:57.152][self$createEntryFromContent] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:56:57.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:57.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:57.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:57.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:57.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:57.165][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:56:57.167][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:56:57.168][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.169][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.171][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2024-11-05 05:56:57.172][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2024-11-05 05:56:57.174][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2024-11-05 05:56:57.175][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.177][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.178][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.178][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2024-11-05 05:56:57.180][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-05 05:56:57.181][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-05 05:56:57.182][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.184][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2024-11-05 05:56:57.187][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.188][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.189][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.191][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.192][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2024-11-05 05:56:57.194][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:57.195][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:57.196][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.198][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.199][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.199][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.199][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.199][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.199][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2024-11-05 05:56:57.201][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:56:57.202][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:56:57.204][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.205][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.206][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2024-11-05 05:56:57.208][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2024-11-05 05:56:57.209][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2024-11-05 05:56:57.211][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.212][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.214][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2024-11-05 05:56:57.215][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:56:57.216][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:56:57.218][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.219][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.221][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2024-11-05 05:56:57.222][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:56:57.224][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:56:57.225][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.226][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.228][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2024-11-05 05:56:57.230][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-05 05:56:57.231][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-05 05:56:57.232][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.234][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.235][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2024-11-05 05:56:57.237][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:56:57.238][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:56:57.240][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.241][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2024-11-05 05:56:57.244][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:56:57.246][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:56:57.247][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.248][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2024-11-05 05:56:57.251][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:57.253][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:56:57.254][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.255][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.257][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2024-11-05 05:56:57.258][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2024-11-05 05:56:57.260][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2024-11-05 05:56:57.261][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.263][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.264][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2024-11-05 05:56:57.266][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:56:57.267][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:56:57.268][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.270][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.271][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2024-11-05 05:56:57.273][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:57.274][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:56:57.276][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.277][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.278][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2024-11-05 05:56:57.280][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:56:57.282][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:56:57.283][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.284][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.286][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2024-11-05 05:56:57.287][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:56:57.289][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:56:57.290][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.291][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.293][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2024-11-05 05:56:57.295][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:57.296][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:57.298][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.312][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2024-11-05 05:56:57.316][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:57.317][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:57.319][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.320][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.322][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2024-11-05 05:56:57.324][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:57.325][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:57.327][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.328][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.330][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2024-11-05 05:56:57.332][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:56:57.333][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:56:57.335][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.336][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2024-11-05 05:56:57.339][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2024-11-05 05:56:57.341][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2024-11-05 05:56:57.342][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.344][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2024-11-05 05:56:57.347][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2024-11-05 05:56:57.348][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2024-11-05 05:56:57.350][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.351][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.352][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2024-11-05 05:56:57.354][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.356][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.357][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.358][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.360][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2024-11-05 05:56:57.361][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:56:57.363][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:56:57.364][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.365][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2024-11-05 05:56:57.369][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:56:57.370][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:56:57.372][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.373][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2024-11-05 05:56:57.376][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:56:57.378][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:56:57.379][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.380][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.382][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2024-11-05 05:56:57.384][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:56:57.385][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:56:57.386][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.388][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.389][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2024-11-05 05:56:57.391][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:56:57.392][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:56:57.394][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.395][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.396][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2024-11-05 05:56:57.398][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.400][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.401][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.402][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.404][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2024-11-05 05:56:57.406][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-05 05:56:57.407][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-05 05:56:57.408][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.410][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.411][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2024-11-05 05:56:57.413][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2024-11-05 05:56:57.414][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2024-11-05 05:56:57.416][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.417][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.419][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2024-11-05 05:56:57.420][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2024-11-05 05:56:57.422][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2024-11-05 05:56:57.423][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.425][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.426][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2024-11-05 05:56:57.428][entry.fields$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:57.429][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:57.431][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.432][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.434][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:56:57.435][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2024-11-05 05:56:57.437][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2024-11-05 05:56:57.438][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.439][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.441][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2024-11-05 05:56:57.443][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2024-11-05 05:56:57.444][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2024-11-05 05:56:57.445][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.447][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.448][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2024-11-05 05:56:57.450][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:56:57.452][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:56:57.453][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.454][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.456][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2024-11-05 05:56:57.457][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:57.459][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:57.460][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.462][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.463][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2024-11-05 05:56:57.465][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-05 05:56:57.466][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-05 05:56:57.468][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.469][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.470][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2024-11-05 05:56:57.472][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:56:57.474][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:56:57.475][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.476][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.478][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2024-11-05 05:56:57.480][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:56:57.481][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:56:57.483][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.484][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.486][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2024-11-05 05:56:57.487][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:56:57.489][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:56:57.490][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.491][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.493][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2024-11-05 05:56:57.495][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:57.496][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:57.498][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.499][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.501][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2024-11-05 05:56:57.503][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:56:57.504][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:56:57.505][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.507][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.508][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2024-11-05 05:56:57.510][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2024-11-05 05:56:57.512][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-05 05:56:57.513][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.514][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.516][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2024-11-05 05:56:57.518][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.519][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.520][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.522][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.523][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2024-11-05 05:56:57.525][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.527][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.528][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.530][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.531][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2024-11-05 05:56:57.533][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:57.535][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:57.536][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.537][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.539][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2024-11-05 05:56:57.541][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:57.542][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:57.544][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.545][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.547][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2024-11-05 05:56:57.549][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:56:57.550][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:56:57.551][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.553][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.554][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2024-11-05 05:56:57.556][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:56:57.558][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:56:57.559][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.560][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.562][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2024-11-05 05:56:57.564][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2024-11-05 05:56:57.565][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2024-11-05 05:56:57.567][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.568][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.569][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2024-11-05 05:56:57.571][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2024-11-05 05:56:57.573][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2024-11-05 05:56:57.574][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.576][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.577][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2024-11-05 05:56:57.579][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:56:57.581][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:56:57.582][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.583][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.585][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2024-11-05 05:56:57.587][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:56:57.588][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:56:57.590][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.591][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.593][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:56:57.594][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2024-11-05 05:56:57.596][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2024-11-05 05:56:57.597][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.599][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.600][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2024-11-05 05:56:57.602][entry.fields$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:57.604][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:57.605][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.606][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.608][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:56:57.610][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2024-11-05 05:56:57.611][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2024-11-05 05:56:57.613][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.614][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.616][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2024-11-05 05:56:57.617][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2024-11-05 05:56:57.619][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2024-11-05 05:56:57.620][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.622][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.623][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2024-11-05 05:56:57.626][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:56:57.627][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:56:57.628][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.630][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.632][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2024-11-05 05:56:57.634][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:56:57.635][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:56:57.637][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.638][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.640][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2024-11-05 05:56:57.642][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:57.643][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:57.644][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.646][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.647][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2024-11-05 05:56:57.649][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2024-11-05 05:56:57.651][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2024-11-05 05:56:57.652][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.654][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.655][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2024-11-05 05:56:57.657][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2024-11-05 05:56:57.659][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2024-11-05 05:56:57.660][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.661][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.663][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2024-11-05 05:56:57.665][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2024-11-05 05:56:57.666][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2024-11-05 05:56:57.668][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.669][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.671][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2024-11-05 05:56:57.673][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2024-11-05 05:56:57.674][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2024-11-05 05:56:57.676][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.677][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.679][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2024-11-05 05:56:57.681][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:56:57.682][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:56:57.684][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.685][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.686][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2024-11-05 05:56:57.688][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:56:57.690][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:56:57.691][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.693][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.694][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2024-11-05 05:56:57.696][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:56:57.698][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:56:57.699][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.701][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.702][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2024-11-05 05:56:57.704][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:56:57.706][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:56:57.707][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.708][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.710][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2024-11-05 05:56:57.723][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:56:57.725][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:56:57.726][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.728][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2024-11-05 05:56:57.732][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2024-11-05 05:56:57.734][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2024-11-05 05:56:57.735][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.737][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.738][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2024-11-05 05:56:57.741][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.742][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.744][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.745][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.747][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2024-11-05 05:56:57.749][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.751][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.752][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.754][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.755][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2024-11-05 05:56:57.758][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.759][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.760][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.762][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2024-11-05 05:56:57.766][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:56:57.767][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:56:57.768][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.770][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.771][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2024-11-05 05:56:57.774][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:56:57.775][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:56:57.776][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.778][entry.fields$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.779][entry.fields$get] Asked field names are: products.
biodb.TRACE[2024-11-05 05:56:57.781][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2024-11-05 05:56:57.782][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.783][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:56:57.785][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2024-11-05 05:56:57.787][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:57.789][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:57.790][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.792][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:56:57.793][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2024-11-05 05:56:57.796][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-05 05:56:57.797][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-05 05:56:57.799][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.800][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:57.802][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2024-11-05 05:56:57.804][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:56:57.805][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:56:57.807][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.808][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:56:57.810][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2024-11-05 05:56:57.812][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2024-11-05 05:56:57.813][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2024-11-05 05:56:57.815][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.816][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2024-11-05 05:56:57.818][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2024-11-05 05:56:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:57.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:57.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:57.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:57.943][self$createEntryFromContent] Accession numbers: 1018.
biodb.TRACE[2024-11-05 05:56:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:57.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:57.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:58.014][bdb$getConfig()$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:56:58.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:56:58.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:58.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:58.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:58.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:56:58.025][biodb::testThat]
biodb.INFO [2024-11-05 05:56:58.027][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-11-05 05:56:58.028][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:58.029][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:58.033][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/entry-comp.sqlite-1018-content.json".
biodb.DEBUG[2024-11-05 05:56:58.035][biodb$getFactory()$createEntryFromCo ...] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:56:58.037][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:56:58.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:56:58.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:56:58.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:56:58.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:56:58.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:56:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:58.201][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 1018.
biodb.TRACE[2024-11-05 05:56:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:58.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.374][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.376][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.415][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.416][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.419][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:56:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.455][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.456][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.459][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.554][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:56:58.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:56:58.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.744][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.746][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:56:58.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.755][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:56:58.757][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:56:58.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:56:58.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:56:58.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:56:58.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.787][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.808][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:56:58.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:56:58.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.823][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:58.833][biodb::testThat]
biodb.INFO [2024-11-05 05:56:58.835][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-05 05:56:58.836][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:58.837][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:58.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:58.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:56:58.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:56:58.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:58.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:56:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:58.866][biodb::testThat]
biodb.INFO [2024-11-05 05:56:58.867][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-05 05:56:58.869][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:58.870][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:58.874][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.879][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:58.880][function(conn, opt)] Testing searchForEntries() with entry "1018" and field "name".
biodb.TRACE[2024-11-05 05:56:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:58.917][function(conn, opt)] With value "2-Aminoethylarsonate".
biodb.TRACE[2024-11-05 05:56:58.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:58.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:58.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:58.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:58.968][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:58.977][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate"));".
biodb.DEBUG[2024-11-05 05:56:58.979][function(conn, opt)] With found IDs [1]: "1018".
biodb.TRACE[2024-11-05 05:56:58.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:58.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.006][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.007][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.009][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.013][ef$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.014][ef$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.017][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:59.022][biodb::testThat]
biodb.INFO [2024-11-05 05:56:59.024][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-11-05 05:56:59.025][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:59.026][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:59.029][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.139][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.146][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate"));".
biodb.INFO [2024-11-05 05:56:59.168][biodb::testThat]
biodb.INFO [2024-11-05 05:56:59.169][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-11-05 05:56:59.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:59.172][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:56:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:59.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:56:59.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:56:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.238][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.254][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:59.259][biodb::testThat]
biodb.INFO [2024-11-05 05:56:59.260][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-11-05 05:56:59.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:59.263][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:59.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.363][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.376][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.380][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.387][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate"));".
biodb.TRACE[2024-11-05 05:56:59.407][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.432][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.436][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.443][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate"));".
biodb.TRACE[2024-11-05 05:56:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.469][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.471][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.532][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.536][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.545][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."molecular.mass" >= 169.002) and ("entries"."molecular.mass" <= 169.022)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.568][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.608][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.612][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.624][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate") and ("entries"."molecular.mass" >= 169.002) and ("entries"."molecular.mass" <= 169.022)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.649][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.669][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.679][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.691][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate") and ("entries"."molecular.mass" >= 169.002) and ("entries"."molecular.mass" <= 169.042)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.769][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.778][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.786][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."monoisotopic.mass" >= 168.972) and ("entries"."monoisotopic.mass" <= 168.97202)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.808][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.821][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.851][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.863][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate") and ("entries"."monoisotopic.mass" >= 168.972) and ("entries"."monoisotopic.mass" <= 168.97202)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.904][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.909][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:56:59.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:56:59.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.913][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:56:59.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.919][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:56:59.931][self$getQuery] Running query "select distinct "entries"."accession" from "entries" join "name" on "name"."accession" = "entries"."accession" where (("name"."name" = "2-Aminoethylarsonate") and ("entries"."monoisotopic.mass" >= 168.972) and ("entries"."monoisotopic.mass" <= 168.97204)) limit 3;".
biodb.TRACE[2024-11-05 05:56:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.960][ef$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.961][ef$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:56:59.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.964][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:56:59.976][biodb::testThat]
biodb.INFO [2024-11-05 05:56:59.977][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-11-05 05:56:59.979][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:56:59.980][biodb::testThat]
biodb.TRACE[2024-11-05 05:56:59.984][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:56:59.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:56:59.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:56:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:56:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.014][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.019][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.036][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.044][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.053][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."molecular.mass" >= 169.002) and ("entries"."molecular.mass" <= 169.022)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.056][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.077][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.078][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.082][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.083][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.085][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.088][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.089][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.091][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.107][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.108][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.110][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.111][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.116][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.136][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.176][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.202][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.211][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."monoisotopic.mass" >= 168.96201) and ("entries"."monoisotopic.mass" <= 168.98201)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.214][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.234][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.236][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.240][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.241][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.243][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.247][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.249][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.253][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.254][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.256][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.257][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.262][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.283][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.284][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.296][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:00.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:00.306][biodb::testThat]
biodb.INFO [2024-11-05 05:57:00.307][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-11-05 05:57:00.309][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:00.310][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:57:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:57:00.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.349][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.362][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.375][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.384][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."molecular.mass" >= 169.00946482) and ("entries"."molecular.mass" <= 169.01453518)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.387][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.407][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.409][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.413][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.414][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.416][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.419][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.420][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.422][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.426][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.427][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.429][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.430][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.434][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.455][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.457][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.509][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.535][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.544][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."monoisotopic.mass" >= 168.96947541985) and ("entries"."monoisotopic.mass" <= 168.97454458015)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.547][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.568][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.569][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.573][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.574][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.576][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.580][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.582][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.586][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.587][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.589][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.590][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.594][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.615][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.617][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.629][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:00.640][biodb::testThat]
biodb.INFO [2024-11-05 05:57:00.642][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-11-05 05:57:00.644][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:00.645][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:57:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:57:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.687][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.701][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:00.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.713][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.722][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."molecular.mass" >= 169.002) and ("entries"."molecular.mass" <= 169.022)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.725][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.745][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.747][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.751][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.752][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.754][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.758][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.759][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.763][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.765][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.766][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.768][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.772][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.792][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.794][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.851][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:00.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.890][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:00.900][self$getQuery] Running query "select distinct "entries"."accession" from "entries" where (("entries"."monoisotopic.mass" >= 168.96201) and ("entries"."monoisotopic.mass" <= 168.98201)) limit 3;".
biodb.DEBUG[2024-11-05 05:57:00.902][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:00.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:00.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:00.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:00.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:00.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:00.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.923][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.925][private$selectFields]
biodb.TRACE[2024-11-05 05:57:00.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:00.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:00.929][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.930][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.932][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.936][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.937][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.941][private$selectFields] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.943][private$organizeFieldsByGroups] Fields [1]: "comp.sqlite.id"
biodb.TRACE[2024-11-05 05:57:00.944][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.946][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.950][private$organizeFieldsByGroups] Groups [2]: "comp.sqlite.id, list()"
biodb.TRACE[2024-11-05 05:57:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:00.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:00.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.sqlite.id] [1018].
biodb.DEBUG[2024-11-05 05:57:00.970][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:00.972][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:00.998][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:01.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:01.007][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.009][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-11-05 05:57:01.010][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.011][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:01.014][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-11-05 05:57:01.015][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:01.017][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2024-11-05 05:57:01.019][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:01.020][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:01.049][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2024-11-05 05:57:01.051][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.057][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2024-11-05 05:57:01.058][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.065][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:01.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.077][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:01.080][self$createEntryFromContent] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:01.081][self$createEntryFromContent] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:57:01.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:01.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:01.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:01.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:01.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:01.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:01.139][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:01.140][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-05 05:57:01.151][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.152][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-11-05 05:57:01.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.155][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:01.160][function(conn, opt)] IDS: [2]: "WRONGB, 1018"
biodb.DEBUG[2024-11-05 05:57:01.162][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-11-05 05:57:01.163][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:01.165][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2024-11-05 05:57:01.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:01.168][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:01.173][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2024-11-05 05:57:01.175][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.177][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.180][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2024-11-05 05:57:01.182][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.189][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:01.191][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.197][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.201][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:01.204][self$createEntryFromContent] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:01.205][self$createEntryFromContent] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:57:01.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:01.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:01.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:01.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:01.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:01.274][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:01.275][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-05 05:57:01.276][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-11-05 05:57:01.293][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.294][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-11-05 05:57:01.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.297][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.313][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.315][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-11-05 05:57:01.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.317][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.328][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.330][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-11-05 05:57:01.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.332][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.348][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.349][biodb::testThat] Running test function test.db.editing (" We can edit a database. ").
biodb.INFO [2024-11-05 05:57:01.350][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.352][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:01.358][super$initialize] Initialize connector comp.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:01.360][conn$getBiodb()$getFactory()$createConn] Creating new connector comp.sqlite.1 for database class comp.sqlite .
biodb.TRACE[2024-11-05 05:57:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:01.430][conn.2$getBiodb()$getFactory()$delet ...] Connector "comp.sqlite.1" deleted.
biodb.INFO [2024-11-05 05:57:01.435][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.437][biodb::testThat] Running test function test.create.conn.with.same.url (" Creating another connector with the same URL is forbidden. ").
biodb.INFO [2024-11-05 05:57:01.438][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.439][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:01.448][super$initialize] Initialize connector comp.sqlite.1.
biodb.ERROR[2024-11-05 05:57:01.450][conn$getBiodb()$getFactory()$createConn] A connector (comp.sqlite) already exists for database comp.sqlite with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/chebi_extract.sqlite).
biodb.INFO [2024-11-05 05:57:01.469][biodb::testThat]
biodb.INFO [2024-11-05 05:57:01.470][biodb::testThat] Running test function test.db.writing (" Database writing works. ").
biodb.INFO [2024-11-05 05:57:01.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:01.473][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:01.478][super$initialize] Initialize connector comp.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:01.479][biodb$getFactory()$createConn] Creating new connector comp.sqlite.1 for database class comp.sqlite .
biodb.ERROR[2024-11-05 05:57:01.481][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:01.508][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:01.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:01.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:01.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:01.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:01.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:01.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:01.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:01.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.542][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:01.543][private$selectFields]
biodb.TRACE[2024-11-05 05:57:01.544][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:01.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:01.547][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.554][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.555][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.559][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.561][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.565][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.566][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.570][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.593][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.604][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.605][private$organizeFieldsByGroups] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.607][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.623][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.626][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.630][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.632][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.636][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.638][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.653][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.664][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.675][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "comp.sqlite.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:01.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, comp.csv.file.id, comp.sqlite.id, description, formula, ...] [1018, 1018, 1018, , C2H8AsNO3, ...].
biodb.DEBUG[2024-11-05 05:57:01.863][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:01.864][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:01.866][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:01.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:01.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:01.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:01.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:01.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:01.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.899][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:01.900][private$selectFields]
biodb.TRACE[2024-11-05 05:57:01.902][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:01.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:01.904][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.910][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.911][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.913][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.917][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.919][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.923][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.924][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.928][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:01.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:01.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.933][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:01.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:01.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.951][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:01.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:01.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:01.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:01.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.963][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.964][private$organizeFieldsByGroups] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:01.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:01.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:01.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.971][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.973][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:01.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.977][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.979][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:01.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:01.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:01.983][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:01.985][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:01.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.031][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.040][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.056][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.057][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.068][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.069][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "comp.sqlite.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, comp.csv.file.id, comp.sqlite.id, description, formula, ...] [1018, 1018, 1018, , C2H8AsNO3, ...].
biodb.DEBUG[2024-11-05 05:57:02.261][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:02.263][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:02.285][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:57:02.287][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:02.289][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "NA".
biodb.DEBUG[2024-11-05 05:57:02.290][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:02.291][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:02.294][self$createEntryFromContent] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:02.295][self$createEntryFromContent] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:57:02.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:02.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:02.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:02.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:02.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:02.349][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:02.350][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.ERROR[2024-11-05 05:57:02.358][private$checkEditingIsAllowed] Editing is not enabled for this database. However this database type is editable. Please call allowEditing() method to enable editing.
biodb.TRACE[2024-11-05 05:57:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:02.440][conn.2$addNewEntry] Impossible to add entry as a new entry. The passed entry is already part of a connector.
biodb.ERROR[2024-11-05 05:57:02.462][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:02.481][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.sqlite.db".
biodb.DEBUG[2024-11-05 05:57:02.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:02.484][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.ERROR[2024-11-05 05:57:02.485][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.TRACE[2024-11-05 05:57:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:02.522][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:02.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:02.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:02.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:02.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:02.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:02.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.554][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:02.556][private$selectFields]
biodb.TRACE[2024-11-05 05:57:02.557][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:02.558][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:02.560][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:02.561][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.567][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.568][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.572][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.574][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.578][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.579][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.605][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.622][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.623][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.627][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.629][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.633][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.634][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.648][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:02.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:02.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.672][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.678][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.679][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.683][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.705][private$selectFields] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:02.707][private$organizeFieldsByGroups] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:02.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.714][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.715][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.718][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.725][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.729][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.741][private$organizeFieldsByGroups] Groups [2]: "c("accession", "description", "formula", "molecular.mass", "monoisotopic.mass", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:02.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 6]: [accession, description, formula, molecular.mass, monoisotopic.mass, ...] [1018, , C2H8AsNO3, 169.012, 168.97201, ...].
biodb.DEBUG[2024-11-05 05:57:02.861][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:02.862][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:03.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:03.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:03.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:03.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:03.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:03.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:03.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:03.163][biodb$getFactory()$deleteConn] Connector "comp.sqlite.1" deleted.
biodb.DEBUG[2024-11-05 05:57:03.167][super$initialize] Initialize connector comp.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:03.169][biodb$getFactory()$createConn] Creating new connector comp.sqlite.1 for database class comp.sqlite , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.sqlite.db".
biodb.TRACE[2024-11-05 05:57:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.188][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2024-11-05 05:57:03.190][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:03.191][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.comp.sqlite.db".
biodb.DEBUG[2024-11-05 05:57:03.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:03.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:03.202][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2024-11-05 05:57:03.203][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.210][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2024-11-05 05:57:03.211][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.218][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:03.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.226][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.230][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.233][self$createEntryFromContent] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:03.235][self$createEntryFromContent] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2024-11-05 05:57:03.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:03.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:03.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:03.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:03.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:03.245][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:03.246][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:03.248][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.249][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.251][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2024-11-05 05:57:03.252][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:03.254][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:03.255][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.256][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.258][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.258][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2024-11-05 05:57:03.259][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:03.261][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:03.262][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.264][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.265][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.265][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.265][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2024-11-05 05:57:03.267][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.268][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.270][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.271][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.272][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2024-11-05 05:57:03.274][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:57:03.275][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:57:03.277][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.278][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.280][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.280][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.280][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.280][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.280][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2024-11-05 05:57:03.281][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:03.283][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:03.284][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.285][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.287][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2024-11-05 05:57:03.289][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:03.290][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:03.291][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.293][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.294][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2024-11-05 05:57:03.296][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:57:03.297][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:57:03.299][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.300][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.302][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2024-11-05 05:57:03.303][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:03.305][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:03.306][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.308][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.309][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2024-11-05 05:57:03.311][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:03.313][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:03.314][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.315][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.317][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2024-11-05 05:57:03.319][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:03.320][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:03.322][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.323][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.325][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2024-11-05 05:57:03.326][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:03.328][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:03.329][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.331][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.332][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2024-11-05 05:57:03.334][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:03.335][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:03.337][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.338][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.340][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2024-11-05 05:57:03.341][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:03.343][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:03.344][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.346][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2024-11-05 05:57:03.349][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:03.350][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:03.352][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.353][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.355][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2024-11-05 05:57:03.356][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:03.358][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:03.359][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.361][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2024-11-05 05:57:03.364][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:03.365][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:03.367][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.368][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.370][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2024-11-05 05:57:03.371][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:03.373][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:03.374][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.376][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.377][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2024-11-05 05:57:03.379][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:03.381][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:03.382][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.383][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.385][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2024-11-05 05:57:03.387][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:03.388][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:03.390][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.391][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.392][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2024-11-05 05:57:03.394][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:03.396][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:03.397][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.398][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2024-11-05 05:57:03.402][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:03.403][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:03.405][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.406][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.408][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2024-11-05 05:57:03.409][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:03.411][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:03.412][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.414][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.415][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2024-11-05 05:57:03.417][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2024-11-05 05:57:03.418][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2024-11-05 05:57:03.420][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.421][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.423][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2024-11-05 05:57:03.424][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.426][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.427][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.429][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.430][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2024-11-05 05:57:03.432][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:03.434][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:03.435][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.436][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.438][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2024-11-05 05:57:03.440][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:03.441][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:03.442][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.444][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.445][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2024-11-05 05:57:03.447][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:03.449][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:03.450][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.451][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.453][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2024-11-05 05:57:03.455][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:03.456][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:03.458][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.459][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.460][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2024-11-05 05:57:03.462][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:03.464][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:03.465][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.466][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.468][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2024-11-05 05:57:03.470][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.471][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.473][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.474][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.476][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2024-11-05 05:57:03.477][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:03.479][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:03.480][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.482][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.483][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2024-11-05 05:57:03.485][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2024-11-05 05:57:03.487][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2024-11-05 05:57:03.488][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.489][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.491][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2024-11-05 05:57:03.493][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2024-11-05 05:57:03.494][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2024-11-05 05:57:03.496][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.497][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.499][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2024-11-05 05:57:03.500][entry.fields$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:03.502][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:03.503][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.505][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.506][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:57:03.508][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2024-11-05 05:57:03.510][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2024-11-05 05:57:03.511][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.512][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.514][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2024-11-05 05:57:03.516][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2024-11-05 05:57:03.529][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2024-11-05 05:57:03.531][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.532][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.534][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2024-11-05 05:57:03.536][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:03.538][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:03.540][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.541][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.543][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2024-11-05 05:57:03.545][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:03.546][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:03.548][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.549][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.551][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2024-11-05 05:57:03.552][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:03.554][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:03.556][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.557][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.559][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2024-11-05 05:57:03.560][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:03.562][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:03.563][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.565][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.566][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2024-11-05 05:57:03.568][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:03.570][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:03.571][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.572][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.574][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2024-11-05 05:57:03.576][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:03.577][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:03.579][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.580][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.582][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2024-11-05 05:57:03.584][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.585][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.587][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.588][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.589][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2024-11-05 05:57:03.591][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:03.593][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:03.594][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.596][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.597][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2024-11-05 05:57:03.599][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2024-11-05 05:57:03.601][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-05 05:57:03.602][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.603][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.605][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2024-11-05 05:57:03.607][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.608][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.610][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.611][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.612][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2024-11-05 05:57:03.614][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.616][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.617][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.619][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.620][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2024-11-05 05:57:03.622][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.624][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.625][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.626][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.628][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2024-11-05 05:57:03.630][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.632][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.633][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.634][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.636][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2024-11-05 05:57:03.638][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:03.639][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:03.641][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.642][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.644][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2024-11-05 05:57:03.646][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:03.647][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:03.649][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.650][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.651][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2024-11-05 05:57:03.653][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2024-11-05 05:57:03.655][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2024-11-05 05:57:03.656][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.658][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.659][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2024-11-05 05:57:03.661][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2024-11-05 05:57:03.663][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2024-11-05 05:57:03.664][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.666][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.667][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2024-11-05 05:57:03.669][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:03.671][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:03.672][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.673][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.675][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2024-11-05 05:57:03.677][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:03.679][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:03.680][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.682][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.683][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:57:03.685][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2024-11-05 05:57:03.687][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2024-11-05 05:57:03.688][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.690][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.691][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2024-11-05 05:57:03.694][entry.fields$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.695][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.697][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.698][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.700][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:57:03.702][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:03.703][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:03.705][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.706][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.708][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2024-11-05 05:57:03.710][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:03.712][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:03.713][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.714][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.716][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2024-11-05 05:57:03.718][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:03.720][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:03.721][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.723][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.724][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2024-11-05 05:57:03.726][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:03.728][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:03.729][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.731][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.732][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2024-11-05 05:57:03.735][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:03.736][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:03.738][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.739][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.741][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2024-11-05 05:57:03.743][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2024-11-05 05:57:03.744][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2024-11-05 05:57:03.746][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.747][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.749][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2024-11-05 05:57:03.751][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:03.753][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:03.754][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.755][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.757][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2024-11-05 05:57:03.759][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2024-11-05 05:57:03.761][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2024-11-05 05:57:03.762][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.764][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.765][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2024-11-05 05:57:03.767][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2024-11-05 05:57:03.769][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2024-11-05 05:57:03.770][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.772][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.774][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2024-11-05 05:57:03.776][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:03.777][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:03.779][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.780][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.782][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2024-11-05 05:57:03.784][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:03.785][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:03.787][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.788][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.790][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2024-11-05 05:57:03.792][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:03.794][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:03.795][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.797][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.798][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2024-11-05 05:57:03.800][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:03.802][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:03.804][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.805][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.807][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2024-11-05 05:57:03.809][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:03.810][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:03.812][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.813][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.815][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2024-11-05 05:57:03.817][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2024-11-05 05:57:03.819][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2024-11-05 05:57:03.820][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.821][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.823][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2024-11-05 05:57:03.825][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:03.827][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:03.828][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.830][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.831][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2024-11-05 05:57:03.834][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:03.835][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:03.837][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.838][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.840][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2024-11-05 05:57:03.842][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:03.844][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:03.845][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.846][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.848][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2024-11-05 05:57:03.850][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:03.852][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:03.853][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.855][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.856][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2024-11-05 05:57:03.859][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:03.860][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:03.862][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.863][entry.fields$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.865][entry.fields$get] Asked field names are: products.
biodb.TRACE[2024-11-05 05:57:03.866][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2024-11-05 05:57:03.868][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.869][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:03.871][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2024-11-05 05:57:03.874][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:03.875][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:03.877][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.878][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:03.880][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2024-11-05 05:57:03.882][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:03.884][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:03.885][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.887][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:03.889][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2024-11-05 05:57:03.891][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:03.893][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:03.894][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.896][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:03.897][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2024-11-05 05:57:03.900][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2024-11-05 05:57:03.902][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2024-11-05 05:57:03.903][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.905][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2024-11-05 05:57:03.906][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2024-11-05 05:57:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:03.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:03.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:03.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:04.044][self$createEntryFromContent] Accession numbers: 1018.
biodb.INFO [2024-11-05 05:57:04.048][biodb$getFactory()$deleteConn] Connector "comp.sqlite.1" deleted.
biodb.INFO [2024-11-05 05:57:04.053][biodb::testThat]
biodb.INFO [2024-11-05 05:57:04.054][biodb::testThat] Running test function test.db.writing.with.col.add (" We can write entries having new fields. ").
biodb.INFO [2024-11-05 05:57:04.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:04.057][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:04.064][super$initialize] Initialize connector comp.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:04.066][conn$getBiodb()$getFactory()$createConn] Creating new connector comp.sqlite.1 for database class comp.sqlite , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.comp.sqlite.db".
biodb.TRACE[2024-11-05 05:57:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:04.143][conn.2$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:04.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:04.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:04.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:04.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:04.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:04.151][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:04.153][private$selectFields]
biodb.TRACE[2024-11-05 05:57:04.154][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:04.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:04.157][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:04.158][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.164][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.165][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.169][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.171][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.175][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.176][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.180][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.191][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.195][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.198][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.202][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:04.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:04.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.219][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.220][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.224][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.226][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.230][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.231][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.235][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.255][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.257][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:04.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.261][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.268][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.273][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.275][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.279][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.284][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.301][private$selectFields] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:04.302][private$organizeFieldsByGroups] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:04.303][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.321][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.323][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.327][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.333][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.349][private$organizeFieldsByGroups] Groups [2]: "c("accession", "description", "formula", "molecular.mass", "monoisotopic.mass", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.367][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 6]: [accession, description, formula, molecular.mass, monoisotopic.mass, ...] [1018, , C2H8AsNO3, 169.012, 168.97201, ...].
biodb.DEBUG[2024-11-05 05:57:04.459][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:04.460][conn.2$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:04.462][fields.def$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:04.464][fields.def$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:04.465][fields.def$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.466][fields.def$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:04.556][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:04.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:04.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:04.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:04.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:04.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:04.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:04.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:04.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:04.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:04.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.589][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:04.590][private$selectFields]
biodb.TRACE[2024-11-05 05:57:04.592][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:04.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:04.595][private$selectFields] Fields [10]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2024-11-05 05:57:04.596][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.602][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.603][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.607][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.609][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.613][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.614][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.618][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.628][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.630][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:04.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:04.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.653][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.658][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.660][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.664][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.666][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.670][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.695][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:04.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.711][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:04.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:04.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.722][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.727][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.729][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.755][private$selectFields] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:04.756][private$organizeFieldsByGroups] Fields [6]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles"
biodb.TRACE[2024-11-05 05:57:04.758][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.763][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.765][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.774][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.778][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.791][private$organizeFieldsByGroups] Groups [2]: "c("accession", "description", "formula", "molecular.mass", "monoisotopic.mass", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:04.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:04.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:04.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 6]: [accession, description, formula, molecular.mass, monoisotopic.mass, ...] [1018, , C2H8AsNO3, 169.012, 168.97201, ...].
biodb.DEBUG[2024-11-05 05:57:04.901][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:04.902][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:04.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:04.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:05.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:05.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:05.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:05.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:05.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:05.158][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:05.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:05.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:05.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:05.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:05.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:05.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:05.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.192][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:05.194][private$selectFields]
biodb.TRACE[2024-11-05 05:57:05.195][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:05.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:05.198][private$selectFields] Fields [11]: "accession, comp.csv.file.id, comp.sqlite.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, ..."
biodb.TRACE[2024-11-05 05:57:05.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.205][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.207][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.211][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.213][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.217][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.219][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.227][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.230][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.246][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.258][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.259][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.263][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.269][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.271][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.275][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.276][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.281][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.282][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.292][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.309][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.321][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.322][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.332][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.334][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.338][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.343][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.360][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.366][private$selectFields] Fields [7]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles, aa.seq"
biodb.TRACE[2024-11-05 05:57:05.368][private$organizeFieldsByGroups] Fields [7]: "accession, description, formula, molecular.mass, monoisotopic.mass, smiles, aa.seq"
biodb.TRACE[2024-11-05 05:57:05.369][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.375][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.376][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.380][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.399][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.403][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.404][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "description", "formula", "molecular.mass", "monoisotopic.mass", "smiles", "aa.seq"), list()"
biodb.TRACE[2024-11-05 05:57:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, description, formula, molecular.mass, monoisotopic.mass, ...] [anewentry, , C2H8AsNO3, 169.012, 168.97201, ...].
biodb.DEBUG[2024-11-05 05:57:05.551][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:05.552][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:05.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:05.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:05.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:05.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:05.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:05.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:05.825][conn.2$getBiodb()$getFactory()$delet ...] Connector "comp.sqlite.1" deleted.
biodb.TRACE[2024-11-05 05:57:05.831][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:05.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:05.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:05.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:05.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:05.849][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:05.852][biodb::testThat]
biodb.INFO [2024-11-05 05:57:05.854][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-11-05 05:57:05.855][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:05.856][biodb::testThat]
biodb.ERROR[2024-11-05 05:57:05.875][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-11-05 05:57:05.898][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-11-05 05:57:05.916][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:57:05.918][self$deleteConn] Connector "comp.sqlite" deleted.
biodb.DEBUG[2024-11-05 05:57:05.920][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:57:05.921][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:05.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:05.923][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:05.937][biodb::testContext]
biodb.INFO [2024-11-05 05:57:05.939][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:05.940][biodb::testContext] Test context - MassCsvFile generic tests
biodb.INFO [2024-11-05 05:57:05.942][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:05.943][biodb::testContext]
biodb.INFO [2024-11-05 05:57:05.946][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:57:05.948][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:57:05.953][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:05.954][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:57:05.956][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:57:05.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.961][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:57:05.963][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:57:05.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.968][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:57:05.969][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:57:05.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.975][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:57:05.976][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:57:05.978][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:57:05.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.983][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:57:05.984][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:57:05.986][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:57:05.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.991][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:57:05.992][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:57:05.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:05.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:05.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:05.997][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:57:05.999][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:57:06.000][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:57:06.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.005][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:57:06.007][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:57:06.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.012][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:57:06.014][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:57:06.015][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:57:06.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.020][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:06.022][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:57:06.023][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:57:06.024][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:57:06.026][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:57:06.027][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:57:06.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.032][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:57:06.034][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:57:06.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.039][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:57:06.041][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:57:06.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.046][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:57:06.048][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:57:06.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.053][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:57:06.054][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:57:06.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.059][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:57:06.061][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:57:06.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.066][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:06.068][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:57:06.072][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:57:06.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.078][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:57:06.079][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:57:06.081][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:57:06.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.086][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:57:06.089][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.090][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:57:06.091][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.093][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:06.094][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.096][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.097][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.098][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.100][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:06.101][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:06.103][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.104][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:57:06.106][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:06.107][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.108][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.110][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:06.110][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.110][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:06.110][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:06.110][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:06.111][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:06.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.115][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:06.117][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.118][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.119][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.121][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:06.123][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:06.125][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.126][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.128][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:57:06.130][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.132][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:06.133][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.134][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:06.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.137][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.139][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.140][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.141][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:06.143][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:06.144][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.146][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:57:06.147][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:06.148][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.150][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.151][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:06.151][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.151][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:06.151][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:06.151][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:06.153][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:06.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.157][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:06.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.159][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.161][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.162][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.163][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:06.165][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:06.166][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.167][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.169][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:57:06.171][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.173][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:57:06.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.176][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:06.177][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.178][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.180][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.181][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.183][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:06.196][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:06.199][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.200][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:57:06.202][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:06.204][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.206][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.207][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.209][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:06.210][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.211][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.213][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:06.214][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.216][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.217][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.218][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.220][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:06.221][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:06.222][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.224][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.226][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:57:06.228][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.230][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:06.231][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.232][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:06.234][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.235][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.237][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.238][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.240][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:06.241][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:06.242][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.244][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:57:06.245][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:06.247][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.248][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:06.249][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.251][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:06.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.255][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:06.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:06.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:06.259][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:06.260][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.261][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:06.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:06.264][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:06.265][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:06.267][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:06.268][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.379][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:57:06.381][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:57:06.383][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:57:06.385][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:57:06.387][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:57:06.388][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:57:06.390][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:06.392][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:06.394][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:57:06.396][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:57:06.398][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:57:06.400][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:57:06.402][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:06.404][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:06.406][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:57:06.408][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:57:06.410][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:57:06.412][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:57:06.414][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:57:06.416][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:57:06.418][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:57:06.420][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:57:06.422][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:57:06.424][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:57:06.426][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:57:06.428][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:57:06.430][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:57:06.432][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:06.434][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:06.436][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:57:06.438][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:57:06.440][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:57:06.442][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:57:06.444][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:57:06.446][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:57:06.449][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:57:06.451][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:57:06.452][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:57:06.454][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:57:06.456][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:57:06.458][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:57:06.460][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:57:06.462][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:57:06.464][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:57:06.466][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:57:06.468][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:57:06.470][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:57:06.472][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:57:06.474][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:57:06.476][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:57:06.478][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:57:06.480][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:57:06.482][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:57:06.484][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:57:06.487][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:57:06.489][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:57:06.491][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:57:06.493][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:57:06.495][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:57:06.497][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:57:06.499][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:57:06.501][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:57:06.503][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:57:06.505][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:57:06.508][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:57:06.510][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:57:06.512][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:57:06.514][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:57:06.516][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:57:06.518][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:57:06.520][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:57:06.522][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:57:06.524][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:57:06.526][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:57:06.528][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:57:06.530][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:57:06.532][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:57:06.534][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:57:06.536][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:57:06.538][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:57:06.540][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:57:06.542][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:57:06.556][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:57:06.558][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:57:06.561][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:57:06.566][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:57:06.567][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:06.572][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:06.573][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:06.575][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.INFO [2024-11-05 05:57:06.582][biodb::testThat]
biodb.INFO [2024-11-05 05:57:06.583][biodb::testThat] Running test function test_cache_for_local_db (" We can use the cache system for a local database. ").
biodb.INFO [2024-11-05 05:57:06.584][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:06.586][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:06.588][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:57:06.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:06.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.597][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:06.599][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:57:06.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2024-11-05 05:57:06.603][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/mass.csv.file-c54dcc2f7135960834ac703432f83297" for "mass.csv.file-c54dcc2f7135960834ac703432f83297".
biodb.TRACE[2024-11-05 05:57:06.604][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-05 05:57:06.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:57:06.607][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:57:06.609][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:06.610][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:06.612][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:06.613][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2024-11-05 05:57:06.614][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:06.618][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.626][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.628][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:57:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.635][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.635][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.637][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.644][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.644][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.644][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.646][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.654][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.654][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.654][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.654][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.656][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.664][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.664][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.664][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.664][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.664][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.665][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.673][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.675][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.682][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.684][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2024-11-05 05:57:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.691][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.693][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:06.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.701][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.703][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.710][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.712][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2024-11-05 05:57:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.720][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.722][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2024-11-05 05:57:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.729][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.731][self$setField] Set field cas.id to column(s) cas.id.
biodb.TRACE[2024-11-05 05:57:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:06.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.739][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.741][self$setField] Set field chebi.id to column(s) chebi.id.
biodb.TRACE[2024-11-05 05:57:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:06.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.748][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.750][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.757][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.759][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:06.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.767][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.768][self$setField] Set field peak.mzexp to column(s) peak.mzexp.
biodb.TRACE[2024-11-05 05:57:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.776][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.778][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2024-11-05 05:57:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.785][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.787][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:06.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.796][self$setField] Set field peak.formula to column(s) peak.formula.
biodb.TRACE[2024-11-05 05:57:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.804][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.805][self$setField] Set field msprecannot to column(s) msprecannot.
biodb.TRACE[2024-11-05 05:57:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.813][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.815][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:57:06.816][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.822][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.824][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:06.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.831][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.841][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level peak.mzexp peak.intensity chrom.rt.unit peak.formula msprecannot msprecmz peak.attr
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 282.083871 100 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 NA NA s NA NA NA NA
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 150.041965 56 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 NA NA s NA NA NA NA
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 133.015586 5 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 NA NA s NA NA NA NA
biodb.TRACE[2024-11-05 05:57:06.844][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/mass.csv.file-c54dcc2f7135960834ac703432f83297/KNA00776.tsv"
biodb.DEBUG[2024-11-05 05:57:06.846][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:57:06.848][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:06.850][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:06.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:06.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:06.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:06.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:06.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.866][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.868][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.869][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.871][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.873][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.874][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.876][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.880][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.881][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.883][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.885][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.886][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.888][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.890][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.892][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.893][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.895][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.897][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.898][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.900][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.902][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:06.904][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.TRACE[2024-11-05 05:57:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:07.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:07.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:07.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:07.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:07.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:07.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:07.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.246][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:07.248][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:07.249][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:07.250][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:07.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:07.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:07.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.269][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.270][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.275][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.276][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.280][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.282][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.286][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.287][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.292][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.293][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:07.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:07.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.316][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:07.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:07.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:07.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:07.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.333][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.335][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.350][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.352][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.356][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.358][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.362][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.363][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.368][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:07.369][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.371][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.375][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.376][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.380][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.382][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.384][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.386][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:07.387][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:07.389][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.390][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.393][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.394][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.396][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.400][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.402][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.406][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:07.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:07.569][self$createEntryFromContent] Accession numbers: KNA00776.
biodb.TRACE[2024-11-05 05:57:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:07.619][bdb$getConfig()$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:57:07.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:07.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:07.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:07.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:07.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:07.632][biodb::testThat]
biodb.INFO [2024-11-05 05:57:07.633][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-11-05 05:57:07.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:07.636][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:07.641][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/entry-mass.csv.file-KNA00776-content.tsv".
biodb.DEBUG[2024-11-05 05:57:07.643][biodb$getFactory()$createEntryFromCo ...] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:07.645][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:07.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:07.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:07.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:07.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:07.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:07.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:07.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:07.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:07.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:07.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:07.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:07.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:07.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:07.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:07.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.911][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.960][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:07.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:07.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:08.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.006][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.017][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:08.019][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:08.020][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:08.021][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:08.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.039][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.041][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.045][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.046][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.050][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.052][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.067][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.069][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.074][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.075][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.079][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.102][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.103][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:08.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:08.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.118][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:08.120][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:08.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.124][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:08.125][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:08.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.129][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.131][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.135][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:08.136][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.138][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.142][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.143][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.147][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.149][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.153][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:08.154][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:08.156][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.157][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.161][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.162][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.166][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.168][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.172][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:08.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:08.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:08.334][biodb$getFactory()$createEntryFromCo ...] Accession numbers: KNA00776.
biodb.TRACE[2024-11-05 05:57:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:08.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.587][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.588][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.626][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.627][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.665][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.666][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.704][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.705][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.708][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.743][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.744][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.747][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:08.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:08.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.834][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.838][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.877][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:08.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.939][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.951][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.952][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:08.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.069][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.070][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.073][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.108][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.110][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.146][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.148][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.199][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.200][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.203][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.237][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.238][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.241][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.258][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:09.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.269][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:09.270][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:09.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:09.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:09.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.290][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.291][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.300][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.302][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.305][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.311][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.313][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.315][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.322][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.323][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.332][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:09.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:09.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:09.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:09.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:09.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:09.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:09.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:09.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.385][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.387][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.389][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.395][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.397][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.406][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:09.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:09.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.420][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.422][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.431][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.432][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.435][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.441][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.443][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:09.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:09.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.456][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:09.466][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.467][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-05 05:57:09.468][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.470][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:09.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:09.492][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.494][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-05 05:57:09.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.496][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.504][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.506][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-11-05 05:57:09.507][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.508][biodb::testThat]
biodb.WARN [2024-11-05 05:57:09.513][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-05 05:57:09.518][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-05 05:57:09.543][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.545][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-11-05 05:57:09.546][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.548][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:09.593][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.594][biodb::testThat] Running test function test.getChromCol (" We can retrieve a list of chromatographic columns. ").
biodb.INFO [2024-11-05 05:57:09.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.597][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.621][biodb::testThat]
biodb.INFO [2024-11-05 05:57:09.623][biodb::testThat] Running test function test.searchMsPeaks.rt (" We can search for (M/Z, RT) couples, separately. ").
biodb.INFO [2024-11-05 05:57:09.624][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:09.626][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:09.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.733][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:09.735][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:09.736][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:09.737][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:09.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:09.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:09.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:09.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:09.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:09.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:09.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.755][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.757][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.761][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.762][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.766][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.768][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.772][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.773][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:09.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.777][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.778][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:09.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:09.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:09.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.787][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.788][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:09.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:09.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.792][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:09.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:09.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:09.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:09.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.804][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:09.806][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:09.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:09.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:09.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.814][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:09.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.821][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.822][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.826][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.828][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:09.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.832][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.833][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.837][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.838][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:09.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.842][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.844][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:09.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.847][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.848][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:09.849][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.851][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.853][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.855][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.856][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.860][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.862][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.866][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:09.867][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:09.868][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.870][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.874][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.875][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.879][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.881][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.905][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.983][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.984][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:09.989][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.990][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:09.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:09.993][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:09.995][private$matchingMzWithSpectra] M/Z values to process [1]: "282.083871"
biodb.TRACE[2024-11-05 05:57:10.067][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.068][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.071][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.072][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.074][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:10.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:10.099][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:10.100][private$selectByRange] Filtering on field "peak.mztheo", with range: [282.083871, 282.083871].
biodb.DEBUG[2024-11-05 05:57:10.104][private$selectByRange] 29 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:10.110][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:10.146][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: KNA00776.
biodb.TRACE[2024-11-05 05:57:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:10.158][private$computeRtRange] At step 1, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:10.160][private$computeRtRange] RT tol is 0 (s).
biodb.DEBUG[2024-11-05 05:57:10.161][private$computeRtRange] At step 2, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:10.162][private$computeRtRange] At step 3, RT range is [329.851, 329.851] (s).
biodb.TRACE[2024-11-05 05:57:10.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:10.220][self$filterEntriesOnRt] Testing if RT value 329.85108 (s) is in range [329.85108;329.85108] (s) of database entry KNA00776. Used range (after applying tolerances) for RT value is [329.85108, 329.85108] (s).
biodb.TRACE[2024-11-05 05:57:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:10.239][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00776.
biodb.DEBUG[2024-11-05 05:57:10.240][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:10.241][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:10.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:10.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:10.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:10.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:10.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.276][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:10.277][private$selectFields]
biodb.TRACE[2024-11-05 05:57:10.279][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:10.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:10.282][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:10.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:10.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:10.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.293][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.300][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.301][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.305][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.307][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.311][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.312][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.315][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.316][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.318][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.322][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.323][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.327][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:10.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:10.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.333][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:10.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:10.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:10.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:10.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.349][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.351][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.366][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.367][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.371][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.373][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.377][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.378][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.382][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.384][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.388][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.389][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.393][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:10.395][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:10.396][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:10.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:10.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.413][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.415][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.418][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.420][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.424][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.426][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.430][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.431][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.435][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.437][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.441][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:10.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:10.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:10.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:10.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:10.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:10.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.463][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.464][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.479][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.481][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.485][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.486][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.490][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.492][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.496][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.497][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.501][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.503][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.507][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:10.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:10.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:10.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:10.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:10.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:10.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:10.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:10.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:10.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:10.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:10.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:10.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:10.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:10.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.891][private$entriesToListOfDataframes] Entry converted to data frame: [3, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:10.892][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:10.894][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:10.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.949][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.950][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:10.954][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.956][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:10.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:10.959][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:11.006][private$matchingMzWithSpectra] M/Z values to process [1]: "282.083871"
biodb.TRACE[2024-11-05 05:57:11.053][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.055][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.059][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.061][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:11.074][private$selectByRange] Filtering on field "peak.mztheo", with range: [282.083871, 282.083871].
biodb.DEBUG[2024-11-05 05:57:11.079][private$selectByRange] 29 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:11.142][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:11.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:11.170][private$computeRtRange] At step 1, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:11.172][private$computeRtRange] RT tol is 0 (s).
biodb.DEBUG[2024-11-05 05:57:11.173][private$computeRtRange] At step 2, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:11.174][private$computeRtRange] At step 3, RT range is [329.851, 329.851] (s).
biodb.TRACE[2024-11-05 05:57:11.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:11.232][self$filterEntriesOnRt] Testing if RT value 329.85108 (s) is in range [329.85108;329.85108] (s) of database entry KNA00776. Used range (after applying tolerances) for RT value is [329.85108, 329.85108] (s).
biodb.TRACE[2024-11-05 05:57:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:11.251][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00776.
biodb.DEBUG[2024-11-05 05:57:11.252][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:11.273][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:11.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:11.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:11.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:11.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:11.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.296][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:11.297][private$selectFields]
biodb.TRACE[2024-11-05 05:57:11.299][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:11.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:11.314][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:11.316][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:11.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:11.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.335][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.337][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.340][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.341][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.343][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.347][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.349][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.353][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.355][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.359][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.361][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:11.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:11.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:11.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:11.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:11.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:11.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.384][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.389][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.390][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.393][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.400][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.406][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.408][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.412][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.414][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.418][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.420][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.424][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.426][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.429][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.430][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.432][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.436][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:11.438][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:11.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:11.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:11.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.457][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.458][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.463][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.464][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.469][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.470][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.475][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.476][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.479][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.481][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.482][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.486][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:11.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:11.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.492][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:11.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:11.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:11.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.509][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.510][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.512][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.515][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.521][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.528][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.530][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.534][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.536][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.540][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.542][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.547][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.548][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.553][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.554][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.558][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:11.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.572][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:11.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:11.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:11.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:11.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:11.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:11.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:11.950][private$entriesToListOfDataframes] Entry converted to data frame: [3, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:11.951][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:11.953][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:11.975][biodb::testThat]
biodb.INFO [2024-11-05 05:57:11.977][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-11-05 05:57:11.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:11.980][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:11.982][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-11-05 05:57:11.983][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:11.985][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:11.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:11.988][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:11.990][private$doGetEntryContentFromDb] Entry id: WRONGA
biodb.DEBUG[2024-11-05 05:57:11.999][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:12.002][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:12.003][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:12.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:12.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:12.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:12.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:12.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:12.073][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:12.074][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-05 05:57:12.086][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.088][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-11-05 05:57:12.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.091][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:12.097][function(conn, opt)] IDS: [2]: "WRONGB, KNA00776"
biodb.DEBUG[2024-11-05 05:57:12.099][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-11-05 05:57:12.100][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:12.102][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:12.104][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:12.105][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:12.107][private$doGetEntryContentFromDb] Entry id: WRONGB
biodb.DEBUG[2024-11-05 05:57:12.116][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:12.119][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:12.121][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:12.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:12.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:12.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:12.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:12.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.137][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:12.178][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:12.180][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-05 05:57:12.181][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-11-05 05:57:12.198][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.200][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-11-05 05:57:12.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.203][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.220][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.221][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-11-05 05:57:12.223][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.224][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.239][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.240][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-11-05 05:57:12.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.243][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.259][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.261][biodb::testThat] Running test function test.db.editing (" We can edit a database. ").
biodb.INFO [2024-11-05 05:57:12.262][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.264][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:12.271][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:12.273][conn$getBiodb()$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file .
biodb.TRACE[2024-11-05 05:57:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:12.299][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:12.300][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:12.302][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:12.304][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:12.305][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:12.306][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2024-11-05 05:57:12.308][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:57:12.310][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:12.317][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:12.320][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:12.322][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:12.324][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:12.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:12.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:12.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:12.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:12.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:12.380][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:12.382][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:57:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:12.429][conn.2$getBiodb()$getFactory()$delet ...] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:12.434][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.448][biodb::testThat] Running test function test.create.conn.with.same.url (" Creating another connector with the same URL is forbidden. ").
biodb.INFO [2024-11-05 05:57:12.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.451][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:12.462][super$initialize] Initialize connector mass.csv.file.1.
biodb.ERROR[2024-11-05 05:57:12.464][conn$getBiodb()$getFactory()$createConn] A connector (mass.csv.file) already exists for database mass.csv.file with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv).
biodb.INFO [2024-11-05 05:57:12.484][biodb::testThat]
biodb.INFO [2024-11-05 05:57:12.486][biodb::testThat] Running test function test.db.writing (" Database writing works. ").
biodb.INFO [2024-11-05 05:57:12.487][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:12.488][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:12.494][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:12.496][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file .
biodb.ERROR[2024-11-05 05:57:12.498][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:12.525][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:12.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:12.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:12.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:12.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:12.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.547][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:12.548][private$selectFields]
biodb.TRACE[2024-11-05 05:57:12.549][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:12.551][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:12.552][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:12.553][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:12.561][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:12.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.570][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.572][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.576][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.577][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.582][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.583][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.587][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.589][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.593][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.594][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:12.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.603][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.604][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:12.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:12.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:12.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:12.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:12.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:12.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.620][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.621][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:12.622][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:12.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.625][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:12.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:12.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:12.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:12.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.638][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:12.639][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:12.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.642][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.643][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:12.645][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:12.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.649][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.650][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.655][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:12.656][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:12.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.660][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.662][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.666][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:12.667][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:12.669][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:12.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:12.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.678][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.684][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.685][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.687][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.691][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.693][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.697][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.699][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.703][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.704][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.707][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.708][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.710][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.714][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:12.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:12.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.718][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.720][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:12.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:12.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:12.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:12.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:12.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.738][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:12.739][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:12.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.742][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:12.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:12.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:12.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:12.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.755][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:12.756][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:12.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.760][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:12.762][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:12.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.766][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.767][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.771][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:12.773][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:12.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.777][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.778][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:12.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:12.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:12.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:12.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:12.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:12.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.040][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:13.166][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:13.168][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:13.170][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:13.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:13.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:13.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:13.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:13.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:13.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.206][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:13.208][private$selectFields]
biodb.TRACE[2024-11-05 05:57:13.209][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:13.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:13.212][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:13.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:13.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:13.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.232][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.233][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.237][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.239][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.243][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.245][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.249][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.250][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.254][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.256][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.260][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:13.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:13.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.266][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:13.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:13.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.278][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.283][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.284][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.292][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.300][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.301][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.305][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.307][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.311][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.313][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.316][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.317][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.319][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.323][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.325][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.329][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:13.331][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:13.332][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:13.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:13.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.349][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.351][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.355][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.356][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.361][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.362][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.366][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.368][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.372][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.374][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:13.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:13.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.383][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:13.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:13.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.393][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.400][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.402][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.412][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.417][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.419][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.423][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.424][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.429][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.430][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.434][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.436][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.440][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.441][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.446][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:13.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:13.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:13.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:13.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:13.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:13.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:13.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.698][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:13.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:13.822][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:13.823][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:13.846][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:13.847][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:13.849][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:13.850][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:13.852][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:13.853][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2024-11-05 05:57:13.854][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:57:13.857][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:13.864][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:13.867][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:13.869][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:13.871][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:13.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:13.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:13.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:13.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:13.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:13.941][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:13.942][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.ERROR[2024-11-05 05:57:13.951][private$checkEditingIsAllowed] Editing is not enabled for this database. However this database type is editable. Please call allowEditing() method to enable editing.
biodb.TRACE[2024-11-05 05:57:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.005][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:14.030][conn.2$addNewEntry] Impossible to add entry as a new entry. The passed entry is already part of a connector.
biodb.ERROR[2024-11-05 05:57:14.052][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:14.072][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:14.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:14.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.ERROR[2024-11-05 05:57:14.077][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.INFO [2024-11-05 05:57:14.093][private$doWrite] Write all entries into "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:14.096][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:14.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:14.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:14.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:14.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:14.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.118][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:14.120][private$selectFields]
biodb.TRACE[2024-11-05 05:57:14.121][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:14.122][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:14.124][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:14.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.143][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.144][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.149][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.150][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.154][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.156][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.160][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.161][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.166][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.167][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.171][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.177][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.194][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.196][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.207][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.211][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.213][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.217][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.218][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.222][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.224][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.228][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.229][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.234][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.235][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.239][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:14.241][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:14.242][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.259][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.261][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.265][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.267][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.271][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.285][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.290][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.292][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.297][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.298][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.303][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.326][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.327][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.343][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.344][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.348][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.350][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.354][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.356][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.360][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.361][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.365][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.367][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.371][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.743][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:14.764][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:14.766][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:14.774][biodb$getFactory()$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.DEBUG[2024-11-05 05:57:14.779][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:14.781][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.csv.file.db".
biodb.TRACE[2024-11-05 05:57:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.802][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:14.803][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:14.805][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:14.807][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:14.808][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:14.810][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2024-11-05 05:57:14.811][private$initDb] Loading file database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:14.814][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:14.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.822][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.824][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:57:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.831][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.831][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.833][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:14.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.841][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.841][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.841][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.843][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.850][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.850][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.850][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.850][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.852][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.860][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.860][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.860][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.860][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.860][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.862][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.869][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.871][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.878][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.880][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:14.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.888][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.890][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2024-11-05 05:57:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:14.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.897][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.899][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2024-11-05 05:57:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.906][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.908][self$setField] Set field cas.id to column(s) cas.id.
biodb.TRACE[2024-11-05 05:57:14.910][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:14.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.916][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.918][self$setField] Set field chebi.id to column(s) chebi.id.
biodb.TRACE[2024-11-05 05:57:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.925][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.927][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.934][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.936][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.944][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.946][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:14.955][self$setField] Set field chrom.col.name to column(s) chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:14.963][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:14.965][self$setField] Set field mass.csv.file.id to column(s) mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:14.972][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:14.974][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.976][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:14.982][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:14.984][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:14.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:14.991][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:14.993][self$setField] Set field peak.mz to column(s) peak.mz.
biodb.TRACE[2024-11-05 05:57:14.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.000][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.010][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level chrom.rt.unit chrom.col.name mass.csv.file.id peak.mztheo peak.relative.intensity peak.mz
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 NA 118-00-3 16750 C00387 1 s TOSOH TSKgel ODS-100V 5um Part no. 21456 KNA00776 282.083871;150.041965;133.015586 100;56;5 282.083871;150.041965;133.015586
biodb.DEBUG[2024-11-05 05:57:15.012][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:15.014][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:15.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:15.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:15.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:15.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:15.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.043][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.045][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.047][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.049][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.053][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.057][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.059][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.061][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.066][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.068][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.070][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.071][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.073][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.075][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.077][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "mass.csv.file.id".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:15.078][self$setPropertyValue] Setting property "parsing.expr" to "peak.mz".
biodb.TRACE[2024-11-05 05:57:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.194][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.200][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.311][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.323][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.335][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:15.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.347][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.366][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:15.367][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:15.369][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:15.370][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:15.372][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:15.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:15.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.390][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.391][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.396][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.397][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.401][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.403][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:15.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:15.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.425][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.427][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:15.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:15.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:15.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:15.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.440][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.442][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.459][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.460][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.463][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.465][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.466][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.470][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.472][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.476][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.478][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.482][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.484][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.488][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.490][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.494][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.495][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.500][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:15.501][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.503][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.507][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.509][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.513][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.514][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.519][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:15.520][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:15.522][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.523][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.528][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.529][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.532][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.533][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.535][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.539][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.697][self$createEntryFromContent] Accession numbers: KNA00776.
biodb.INFO [2024-11-05 05:57:15.701][biodb$getFactory()$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:15.706][biodb::testThat]
biodb.INFO [2024-11-05 05:57:15.708][biodb::testThat] Running test function test.db.writing.with.col.add (" We can write entries having new fields. ").
biodb.INFO [2024-11-05 05:57:15.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:15.711][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:15.719][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:15.721][conn$getBiodb()$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.mass.csv.file.db".
biodb.TRACE[2024-11-05 05:57:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.748][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:15.749][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:15.751][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:15.753][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:15.754][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:15.755][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2024-11-05 05:57:15.757][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:57:15.759][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.766][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:15.769][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:15.771][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:15.773][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:15.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:15.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:15.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:15.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:15.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.843][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:15.844][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:57:15.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:15.891][conn.2$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:15.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:15.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:15.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:15.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:15.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:15.900][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:15.901][private$selectFields]
biodb.TRACE[2024-11-05 05:57:15.902][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:15.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:15.905][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:15.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:15.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:15.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:15.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:15.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:15.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.923][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.924][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:15.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.928][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.930][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:15.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.933][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.934][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.935][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:15.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.940][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.941][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:15.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.945][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.947][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.951][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:15.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:15.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:15.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:15.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:15.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:15.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:15.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.974][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.975][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:15.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:15.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.989][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.990][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.992][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:15.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:15.994][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:15.996][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.997][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:15.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.001][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.003][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.007][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.008][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.012][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.014][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.034][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.036][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.040][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.041][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.045][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.047][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.050][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.051][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.052][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.056][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.058][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.067][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:16.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:16.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.084][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.085][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.088][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.100][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.102][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.106][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.107][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.111][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.113][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.117][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.118][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.122][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.123][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.144][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.157][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.162][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.163][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.168][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.169][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.173][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.190][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.191][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.195][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.196][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.200][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.202][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.206][private$selectFields] Fields [12]: "accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, chrom.rt, formula, inchi, inchikey, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:16.207][private$organizeFieldsByGroups] Fields [12]: "accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, chrom.rt, formula, inchi, inchikey, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:16.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.224][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.226][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.229][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.231][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.235][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.236][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.255][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.256][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.257][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.261][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.263][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.267][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.268][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.272][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "inchi", "inchikey", "ms.level", "chrom.rt.unit", "chrom.col.name"), list()"
biodb.TRACE[2024-11-05 05:57:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:16.480][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:16.481][conn.2$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:16.483][fields.def$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:16.484][fields.def$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:16.497][fields.def$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.499][fields.def$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:16.539][private$loadEntries] Creating entries from ids [1]: "anewentry".
biodb.DEBUG[2024-11-05 05:57:16.541][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:16.543][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:16.544][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:16.545][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:16.547][private$doGetEntryContentFromDb] Entry id: anewentry
biodb.DEBUG[2024-11-05 05:57:16.549][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:16.551][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:16.553][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:16.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:16.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:16.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:16.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:16.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:16.606][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:16.608][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.TRACE[2024-11-05 05:57:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:16.637][private$doWrite] Write all entries into "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.mass.csv.file.db".
biodb.DEBUG[2024-11-05 05:57:16.640][self$getBiodb()$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:16.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:16.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:16.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:16.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:16.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.661][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:16.662][private$selectFields]
biodb.TRACE[2024-11-05 05:57:16.663][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:16.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:16.666][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:16.667][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.684][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.685][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.689][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.691][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.695][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.696][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.700][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.702][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.706][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.707][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.711][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.717][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:16.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:16.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.733][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.735][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.746][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.750][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.751][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.755][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.756][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.760][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.762][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.766][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.767][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.771][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.773][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.777][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:16.778][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:16.780][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.790][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.796][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.797][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:16.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.800][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.801][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.802][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.806][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.808][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.810][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.812][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.813][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.816][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.817][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.819][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:16.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.823][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:16.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:16.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.828][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:16.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:16.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.844][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:16.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:16.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.850][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:16.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.858][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.859][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:16.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:16.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:16.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.874][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.875][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:16.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.879][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.880][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:16.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.884][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.886][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.888][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.890][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.891][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:16.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.894][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.895][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.896][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:16.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.900][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:16.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:16.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:17.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:17.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:17.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:17.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:17.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.280][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:17.281][private$selectFields]
biodb.TRACE[2024-11-05 05:57:17.282][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:17.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:17.285][private$selectFields] Fields [21]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:17.286][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:17.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:17.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:17.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:17.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.302][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.304][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.308][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.309][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.312][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.313][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.314][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.318][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.320][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.324][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.325][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.334][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:17.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:17.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.350][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.352][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.366][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.368][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.372][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.373][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.377][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.379][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.383][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.384][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.388][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.389][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.393][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:17.395][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:17.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.399][private$selectFields] Fields [21]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:17.400][private$organizeFieldsByGroups] Fields [21]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:17.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:17.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:17.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:17.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:17.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.417][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.419][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.423][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.424][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.428][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.429][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.433][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.435][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.439][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.440][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.444][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.449][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:17.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:17.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:17.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.465][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.466][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:17.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:17.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:17.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.480][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.481][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.482][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:17.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.486][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.488][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:17.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.490][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.492][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.493][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.496][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.497][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.498][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:17.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.502][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.504][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.508][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:17.509][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:17.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.513][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id", "aa.seq"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:17.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:17.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:17.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 21]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [anewentry, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:18.201][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:18.202][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:18.207][conn.2$getBiodb()$getFactory()$delet ...] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:18.212][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.213][biodb::testThat] Running test function test.getMzValues (" We can retrieve a list of M/Z values. ").
biodb.INFO [2024-11-05 05:57:18.215][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.216][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:18.265][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.266][biodb::testThat] Running test function test.searchForMassSpectra (" We can match M/Z peaks. ").
biodb.INFO [2024-11-05 05:57:18.267][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.269][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.290][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.292][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.296][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.297][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.302][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.303][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.307][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.309][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.322][private$selectByRange] Filtering on field "peak.mztheo", with range: [68, 78].
biodb.DEBUG[2024-11-05 05:57:18.326][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.331][self$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.DEBUG[2024-11-05 05:57:18.333][conn$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.TRACE[2024-11-05 05:57:18.341][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.343][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.345][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.347][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.348][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.353][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.354][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.358][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.360][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.373][private$selectByRange] Filtering on field "peak.mztheo", with range: [81, 91].
biodb.DEBUG[2024-11-05 05:57:18.377][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.383][self$searchForMassSpectra] Found 1 spectra: [1]: "PR010001"
biodb.DEBUG[2024-11-05 05:57:18.384][conn$searchForMassSpectra] Found 1 spectra: [1]: "PR010001"
biodb.INFO [2024-11-05 05:57:18.395][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.397][biodb::testThat] Running test function test.searchForMassSpectra.multiple.mz (" We can search for spectra with multiple M/Z values. ").
biodb.INFO [2024-11-05 05:57:18.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.399][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.421][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.422][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.425][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.426][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.428][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.432][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.434][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.438][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.439][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.452][private$selectByRange] Filtering on field "peak.mztheo", with range: [72.9999, 73.0001].
biodb.DEBUG[2024-11-05 05:57:18.457][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.462][self$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.DEBUG[2024-11-05 05:57:18.464][db$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.TRACE[2024-11-05 05:57:18.473][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.474][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.478][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.480][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.482][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.485][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.486][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.490][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.491][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.505][private$selectByRange] Filtering on field "peak.mztheo", with range: [85.9999, 86.0001].
biodb.DEBUG[2024-11-05 05:57:18.509][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.515][self$searchForMassSpectra] Found 1 spectra: [1]: "PR010001"
biodb.DEBUG[2024-11-05 05:57:18.516][db$searchForMassSpectra] Found 1 spectra: [1]: "PR010001"
biodb.TRACE[2024-11-05 05:57:18.525][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.526][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.530][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.532][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.537][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.538][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.542][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.543][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.556][private$selectByRange] Filtering on field "peak.mztheo", with range: [72.9999, 73.0001], [85.9999, 86.0001].
biodb.DEBUG[2024-11-05 05:57:18.561][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.566][self$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.DEBUG[2024-11-05 05:57:18.568][db$searchForMassSpectra] Found 7 spectra: [7]: "PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008"
biodb.INFO [2024-11-05 05:57:18.586][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.587][biodb::testThat] Running test function test.searchForMassSpectra.with.precursor.and.multiple.inputs (" Search by precursor on multiple mzs does not fail. ").
biodb.INFO [2024-11-05 05:57:18.589][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.590][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.593][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.594][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.598][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.599][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.604][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.606][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.610][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.611][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.624][private$selectByRange] Filtering on field "peak.mztheo", with range: [82.0477843690269, 82.048604850973], [83.013024342803, 83.0138544771971].
biodb.DEBUG[2024-11-05 05:57:18.628][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.637][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:18.638][db$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:18.645][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.647][biodb::testThat] Running test function test.searchForMassSpectra.with.NA.value (" Search for N/A value returns an empty list. ").
biodb.INFO [2024-11-05 05:57:18.648][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.649][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.652][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.654][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.658][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.659][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.662][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.663][db$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:18.672][biodb::testThat]
biodb.INFO [2024-11-05 05:57:18.673][biodb::testThat] Running test function test.collapseResultsDataFrame (" We can collapse the results from searchMsPeaks(). ").
biodb.INFO [2024-11-05 05:57:18.674][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:18.676][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.691][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.693][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.697][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.698][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.700][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.702][private$matchingMzWithSpectra] M/Z values to process [3]: "121.0113, 133.015586, 134.047448"
biodb.TRACE[2024-11-05 05:57:18.704][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.706][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.708][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.710][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.711][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:18.724][private$selectByRange] Filtering on field "peak.mztheo", with range: [120.9113, 121.1113].
biodb.DEBUG[2024-11-05 05:57:18.728][private$selectByRange] 29 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:18.734][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 2 spectra: [2]: "AU200952, AU200953"
biodb.DEBUG[2024-11-05 05:57:18.735][private$loadEntries] Creating entries from ids [2]: "AU200952, AU200953".
biodb.DEBUG[2024-11-05 05:57:18.737][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:57:18.739][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:18.740][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:18.741][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:18.743][private$doGetEntryContentFromDb] Entry id: AU200952, AU200953
biodb.DEBUG[2024-11-05 05:57:18.756][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level peak.mzexp peak.intensity chrom.rt.unit peak.formula msprecannot msprecmz peak.attr
AU200952 NA NA neg 161.0246 100 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 6180 s C7H4F3O- [M-H]- 161.022 [M-H]-
AU200952 NA NA neg 141.0184 22.32232 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 1384 s C7H3F2O- [M-H]- 161.022 NA
AU200952 NA NA neg 121.0113 19.01902 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 1180 s C7H2FO- [M-H]- 161.022 NA
AU200952 NA NA neg 162.0282 6.206206 NA NA C7H5F3O NA NA NA NA NA NA 2 NA 388 s C6[13]CH4F3O- [M-H]- 161.022 NA
biodb.DEBUG[2024-11-05 05:57:18.759][self$createEntryFromContent] Creating Mass spectra CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:57:18.761][self$createEntryFromContent] Parsing 2 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:18.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:18.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:18.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:18.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:18.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:18.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:18.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:18.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:18.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:18.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:18.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:18.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:18.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:18.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.881][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:18.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:18.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:18.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:18.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.938][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:18.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:18.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:18.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.006][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.067][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:19.068][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:19.069][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:19.071][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:19.072][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.077][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.079][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.083][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.084][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.087][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.088][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.090][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.093][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:19.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:19.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.099][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.100][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.104][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.105][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.109][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.111][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.115][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.116][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.120][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.121][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.125][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.127][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.131][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.132][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.136][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.137][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.141][private$selectFields] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.143][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.144][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.148][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.149][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.153][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.155][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.158][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.160][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.164][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.165][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.169][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.171][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.175][private$selectFields] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.176][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.177][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.179][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.183][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.184][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.188][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.190][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.193][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.195][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.199][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.200][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.203][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.204][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.206][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.208][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.210][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:19.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.358][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:19.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:19.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:19.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:19.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:19.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:19.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.486][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:19.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:19.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.572][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:19.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.672][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:19.673][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:19.674][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:19.676][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:19.677][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.682][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.684][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.688][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.697][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.701][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.703][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.707][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:19.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:19.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.712][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.713][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:19.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.717][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.719][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.722][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.723][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.724][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:19.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.728][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.730][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.733][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.734][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.735][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:19.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.739][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.741][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.745][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.746][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.750][private$selectFields] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.752][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.753][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.757][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.758][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.762][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.764][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.768][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.769][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.773][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.775][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.779][private$selectFields] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.780][private$organizeFieldsByGroups] Fields [5]: "peak.mztheo, peak.relative.intensity, peak.intensity, peak.formula, peak.mz"
biodb.TRACE[2024-11-05 05:57:19.781][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.783][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.787][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.788][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.792][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.794][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.798][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.799][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.803][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.804][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.808][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:19.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.934][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:19.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:19.990][self$createEntryFromContent] Accession numbers: AU200952, AU200953.
biodb.DEBUG[2024-11-05 05:57:19.992][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:19.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:19.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:19.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:19.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:19.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.013][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:20.014][private$selectFields]
biodb.TRACE[2024-11-05 05:57:20.015][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.018][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.025][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.026][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.030][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.032][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.036][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.037][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.041][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.047][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.048][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.052][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.054][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.056][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.058][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.059][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.071][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.072][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.076][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.078][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.082][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.084][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.088][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.089][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.093][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.095][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.098][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.099][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.100][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.105][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.106][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.113][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.114][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.118][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.120][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.124][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.125][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.129][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.134][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.136][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.140][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.141][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.145][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.147][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.151][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.152][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.156][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.158][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.162][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.163][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.167][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.169][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.172][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.174][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.177][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.178][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.179][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.183][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "ms.level", "chrom.rt.unit", "msprecannot", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.386][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.432][private$entriesToListOfDataframes] Entry converted to data frame: [4, 14]: [accession, ms.mode, formula, ms.level, chrom.rt.unit, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...] [AU200952, neg, C7H5F3O, 2, s, ...].
biodb.DEBUG[2024-11-05 05:57:20.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:20.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:20.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:20.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:20.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:20.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.460][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:20.461][private$selectFields]
biodb.TRACE[2024-11-05 05:57:20.462][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.465][private$selectFields] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.466][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.472][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.473][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.477][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.479][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.483][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.484][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.488][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.493][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.495][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.499][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.500][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.504][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.506][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.510][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.511][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.515][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.516][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.520][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.522][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.526][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.527][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.531][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.533][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.537][private$selectFields] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.538][private$organizeFieldsByGroups] Fields [13]: "accession, ms.mode, peak.mztheo, peak.relative.intensity, formula, ms.level, peak.intensity, chrom.rt.unit, peak.formula, msprecannot, ..."
biodb.TRACE[2024-11-05 05:57:20.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.545][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.546][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.549][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.550][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.552][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.556][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.557][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.567][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.568][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.572][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.574][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.578][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.579][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.583][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.584][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.588][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.590][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.594][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.595][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.599][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.601][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.603][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.605][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.606][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.610][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "ms.level", "chrom.rt.unit", "msprecannot", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.intensity", "peak.formula", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:20.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.673][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.792][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.797][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.808][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:20.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.827][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.845][private$entriesToListOfDataframes] Entry converted to data frame: [2, 13]: [accession, ms.mode, formula, ms.level, chrom.rt.unit, ...] [AU200953, neg, C7H5F3O, 2, s, ...] [AU200953, neg, C7H5F3O, 2, s, ...].
biodb.DEBUG[2024-11-05 05:57:20.846][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:20.847][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:20.851][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.853][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.857][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.858][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.861][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:20.872][private$selectByRange] Filtering on field "peak.mztheo", with range: [132.915586, 133.115586].
biodb.DEBUG[2024-11-05 05:57:20.876][private$selectByRange] 29 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:20.881][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:20.883][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:20.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:20.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:20.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:20.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:20.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.904][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:20.905][private$selectFields]
biodb.TRACE[2024-11-05 05:57:20.907][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:20.910][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:20.911][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:20.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:20.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:20.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:20.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:20.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:20.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.928][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.929][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:20.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.933][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.935][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:20.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.939][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.940][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:20.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.944][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:20.946][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:20.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.950][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:20.951][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:20.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.956][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:20.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:20.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.961][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:20.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:20.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:20.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:20.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:20.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:20.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.978][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:20.979][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:20.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:20.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:20.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:20.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.994][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.995][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:20.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:20.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:20.999][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.001][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.005][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.006][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.010][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.012][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.016][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.017][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.021][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:21.023][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:21.024][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.028][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.040][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.042][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.046][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.047][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.050][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.051][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.053][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.057][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.058][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.062][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.063][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.071][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.088][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.089][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.091][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.105][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.107][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.111][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.112][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.116][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.118][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.120][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.122][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.123][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.127][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.128][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.133][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.486][private$entriesToListOfDataframes] Entry converted to data frame: [3, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:21.488][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:21.489][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:21.494][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.496][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.500][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.501][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.504][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:21.514][private$selectByRange] Filtering on field "peak.mztheo", with range: [133.947448, 134.147448].
biodb.DEBUG[2024-11-05 05:57:21.518][private$selectByRange] 29 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:21.524][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00596"
biodb.DEBUG[2024-11-05 05:57:21.525][private$loadEntries] Creating entries from ids [1]: "KNA00596".
biodb.DEBUG[2024-11-05 05:57:21.527][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:21.529][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2024-11-05 05:57:21.530][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:21.532][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:21.533][private$doGetEntryContentFromDb] Entry id: KNA00596
biodb.DEBUG[2024-11-05 05:57:21.542][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level peak.mzexp peak.intensity chrom.rt.unit peak.formula msprecannot msprecmz peak.attr
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 346.054414 100 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 NA NA s NA NA NA NA
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 306.076742 24 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 NA NA s NA NA NA NA
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 272.088771 7 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 NA NA s NA NA NA NA
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 134.047448 7 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 NA NA s NA NA NA NA
biodb.DEBUG[2024-11-05 05:57:21.545][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:21.547][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:21.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:21.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:21.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:21.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:21.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.727][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:21.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.809][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:21.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:21.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:21.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:21.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.875][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:21.877][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:21.878][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:21.879][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:21.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:21.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:21.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.885][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:21.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:21.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:21.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.897][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.898][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:21.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.902][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.903][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.907][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.909][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.922][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.923][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:21.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.927][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.929][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:21.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:21.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:21.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:21.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:21.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:21.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:21.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.954][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.956][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:21.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:21.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.964][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.971][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.972][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:21.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.975][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.976][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.977][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:21.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.981][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.983][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:21.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.985][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.987][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:21.988][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.990][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:21.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.993][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.995][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:21.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:21.999][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.000][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.004][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:22.006][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:22.007][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.009][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.012][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.014][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.018][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.019][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.023][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:22.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:22.178][self$createEntryFromContent] Accession numbers: KNA00596.
biodb.DEBUG[2024-11-05 05:57:22.180][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:22.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:22.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:22.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:22.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:22.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.200][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:22.202][private$selectFields]
biodb.TRACE[2024-11-05 05:57:22.203][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:22.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:22.206][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:22.207][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:22.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.222][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.223][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.225][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.227][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.228][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.230][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.234][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.235][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.239][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.241][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.245][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.246][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:22.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:22.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:22.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:22.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:22.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.272][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.273][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.295][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.297][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.300][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.302][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.306][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.307][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.311][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.313][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.315][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.316][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.318][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.322][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:22.323][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:22.324][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.330][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:22.331][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:22.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.339][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.340][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.342][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.346][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.347][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.351][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.352][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.356][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.358][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.362][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.363][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:22.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:22.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.373][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:22.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:22.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:22.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:22.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.389][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.390][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.393][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.398][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.399][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.401][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.405][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.407][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.411][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.412][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.416][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.418][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.422][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.423][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.427][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.429][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.433][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:22.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:22.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:22.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:22.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.791][private$entriesToListOfDataframes] Entry converted to data frame: [4, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:22.792][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:22.794][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:22.820][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.822][biodb::testThat] Running test function test.msmsSearch.empty.spectrum (" MSMS search works for an empty spectrum. ").
biodb.INFO [2024-11-05 05:57:22.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:22.824][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.850][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.851][biodb::testThat] Running test function test.msmsSearch.null.spectrum (" MSMS search works for a null spectrum. ").
biodb.INFO [2024-11-05 05:57:22.852][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:22.854][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.908][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.909][biodb::testThat] Running test function test.msmsSearch.no.ids (" No failure occurs when msmsSearch found no IDs. ").
biodb.INFO [2024-11-05 05:57:22.910][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:22.912][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:22.915][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.917][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.921][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.922][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.925][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.927][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.929][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.933][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.934][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:22.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:22.948][private$selectByRange] Filtering on field "peak.mztheo", with range: [1.5, 2.5].
biodb.DEBUG[2024-11-05 05:57:22.952][private$selectByRange] 25 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:22.963][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:22.965][self$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:22.979][biodb::testContext]
biodb.INFO [2024-11-05 05:57:22.980][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:22.981][biodb::testContext] Test context - MassCsvFile specific tests
biodb.INFO [2024-11-05 05:57:22.983][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:22.984][biodb::testContext]
biodb.INFO [2024-11-05 05:57:22.986][biodb::testThat]
biodb.INFO [2024-11-05 05:57:22.987][biodb::testThat] Running test function test.fields (" Test fields manipulation works correctly. ").
biodb.INFO [2024-11-05 05:57:22.988][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:22.990][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.035][conn$addField] Adding new field nt.seq with value N.
biodb.DEBUG[2024-11-05 05:57:23.037][self$setField] Set field nt.seq to column(s) nt.seq.
biodb.TRACE[2024-11-05 05:57:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: nt.seq.
biodb.TRACE[2024-11-05 05:57:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nt.seq.
biodb.TRACE[2024-11-05 05:57:23.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:23.044][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.ERROR[2024-11-05 05:57:23.046][conn$setField] Database field "invalid.tag.name" is not valid.
biodb.ERROR[2024-11-05 05:57:23.060][conn$setField] Column(s) wrong.col.name
is/are not defined in database file.
biodb.ERROR[2024-11-05 05:57:23.073][conn$setField] Column(s) compound.id
is/are not defined in database file.
biodb.INFO [2024-11-05 05:57:23.090][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.091][biodb::testThat] Running test function test_massCsvFile_entry_instantiation (" Mass CSV file entry construction works. ").
biodb.INFO [2024-11-05 05:57:23.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.094][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.099][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:23.101][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:23.102][private$loadEntries] Creating entries from ids [1]: "A1".
biodb.DEBUG[2024-11-05 05:57:23.104][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:23.106][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:23.107][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:23.108][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:23.110][private$doGetEntryContentFromDb] Entry id: A1
biodb.DEBUG[2024-11-05 05:57:23.112][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.119][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.121][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.128][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.128][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.130][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:57:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.137][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.137][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.137][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:23.141][private$doGetEntryContentFromDb] Content of first entry: accession peak.mztheo msprecmz
A1 80 90
A1 90 90
A1 100 90
A1 110 90
A1 120 90
biodb.DEBUG[2024-11-05 05:57:23.143][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:23.145][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:23.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:23.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:23.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:23.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:23.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:23.156][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.156][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.156][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:23.158][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.158][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.158][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:23.159][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.159][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.159][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:57:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.286][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:23.288][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:23.289][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:23.290][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:23.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.298][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.299][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.303][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.305][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.309][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.310][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.314][private$selectFields] Fields [2]: "peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:57:23.316][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.317][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.321][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.323][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.327][private$selectFields] Fields [2]: "peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:57:23.328][private$organizeFieldsByGroups] Fields [2]: "peak.mztheo, peak.mz"
biodb.TRACE[2024-11-05 05:57:23.329][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.331][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.335][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.336][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.339][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.341][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:23.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:23.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.462][self$createEntryFromContent] Accession numbers: A1.
biodb.TRACE[2024-11-05 05:57:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.476][private$selectFields] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:57:23.477][private$selectFields]
biodb.TRACE[2024-11-05 05:57:23.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:23.480][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:23.481][private$selectFields] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:57:23.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.493][private$selectFields] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:57:23.495][private$organizeFieldsByGroups] Fields [1]: "accession"
biodb.TRACE[2024-11-05 05:57:23.496][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.501][private$organizeFieldsByGroups] Groups [2]: "accession, list()"
biodb.TRACE[2024-11-05 05:57:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:23.522][biodb$getFactory()$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:23.527][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.528][biodb::testThat] Running test function test.basic.mass.csv.file (" MassCsvFileConn methods are correct ").
biodb.INFO [2024-11-05 05:57:23.529][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.531][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:23.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:23.689][msModeField$checkValue] Value(s) wrong.mode.value is/are not allowed for field ms.mode. Allowed values are: -, negative, +, positive, neg, pos.
biodb.TRACE[2024-11-05 05:57:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:23.738][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.739][biodb::testThat] Running test function test.undefined.fields (" Test that we detect undefined fields ").
biodb.INFO [2024-11-05 05:57:23.740][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.741][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.747][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:23.748][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/mass.csv.file-wrong_header.tsv".
biodb.INFO [2024-11-05 05:57:23.750][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/mass.csv.file-wrong_header.tsv".
biodb.DEBUG[2024-11-05 05:57:23.754][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:23.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.761][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.WARN [2024-11-05 05:57:23.762][private$autoSetFields] Column "blabla.id" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:57:23.764][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:23.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:23.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:23.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.781][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.781][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.WARN [2024-11-05 05:57:23.782][private$autoSetFields] Column "mode" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:57:23.784][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.791][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.791][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.791][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.793][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:57:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:23.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.800][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:23.801][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:23.803][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:23.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.808][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:23.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.WARN [2024-11-05 05:57:23.810][private$autoSetFields] Column "colchrom" does not match any biodb field.
biodb.WARN [2024-11-05 05:57:23.811][private$autoSetFields] Column "rt" does not match any biodb field.
biodb.DEBUG[2024-11-05 05:57:23.813][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:23.820][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:23.822][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:57:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:23.829][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:23.830][self$setField] Set field name to column(s) fullnames.
biodb.TRACE[2024-11-05 05:57:23.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:23.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:23.837][self$setPropertyValue] Setting property "parsing.expr" to "fullnames".
biodb.ERROR[2024-11-05 05:57:23.844][private$checkFields] Field(s) accession is/are undefined in file database.
biodb.INFO [2024-11-05 05:57:23.859][biodb$getFactory()$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:23.865][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.866][biodb::testThat] Running test function test.mass.csv.file.data.frame (" Setting database with a data frame works. ").
biodb.INFO [2024-11-05 05:57:23.867][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.869][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.874][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2024-11-05 05:57:23.876][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:23.877][conn$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:23.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.884][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.886][conn$setField] Set field ms.mode to column(s) mode.
biodb.TRACE[2024-11-05 05:57:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.893][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.893][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.895][conn$setField] Set field peak.mztheo to column(s) mz.
biodb.TRACE[2024-11-05 05:57:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.902][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.902][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.902][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:23.905][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.905][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.905][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:23.906][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.906][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.906][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:23.908][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:23.908][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.908][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:23.909][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.INFO [2024-11-05 05:57:23.920][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.921][biodb::testThat] Running test function test.wrong.nb.cols (" Failure occurs when loading database file with a line containing wrong number of values. ").
biodb.INFO [2024-11-05 05:57:23.923][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.924][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.929][super$initialize] Initialize connector mass.csv.file.2.
biodb.DEBUG[2024-11-05 05:57:23.931][biodb$getFactory()$createConn] Creating new connector mass.csv.file.2 for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/mass.csv.file-wrong_nb_cols.tsv".
biodb.INFO [2024-11-05 05:57:23.933][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/mass.csv.file-wrong_nb_cols.tsv".
biodb.INFO [2024-11-05 05:57:23.950][biodb$getFactory()$deleteConn] Connector "mass.csv.file.2" deleted.
biodb.INFO [2024-11-05 05:57:23.955][biodb::testThat]
biodb.INFO [2024-11-05 05:57:23.956][biodb::testThat] Running test function test.field.card.one (" Failure occurs when a field with a cardinality of one has several values for the same accession number. ").
biodb.INFO [2024-11-05 05:57:23.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:23.959][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:23.964][super$initialize] Initialize connector mass.csv.file.2.
biodb.DEBUG[2024-11-05 05:57:23.966][biodb$getFactory()$createConn] Creating new connector mass.csv.file.2 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:23.968][conn$setField] Set field accession to column(s) ids.
biodb.TRACE[2024-11-05 05:57:23.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.975][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:23.977][conn$setField] Set field ms.mode to column(s) mode.
biodb.TRACE[2024-11-05 05:57:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.984][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:23.984][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.986][conn$setField] Set field peak.mztheo to column(s) mz.
biodb.TRACE[2024-11-05 05:57:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:23.993][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:23.993][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:23.993][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:23.996][private$loadEntries] Creating entries from ids [1]: "ZAP".
biodb.DEBUG[2024-11-05 05:57:23.997][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:23.999][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:24.001][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:24.002][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:24.003][private$doGetEntryContentFromDb] Entry id: ZAP
biodb.DEBUG[2024-11-05 05:57:24.007][private$doGetEntryContentFromDb] Content of first entry: ids mz mode
ZAP 12 pos
ZAP 14 neg
biodb.DEBUG[2024-11-05 05:57:24.009][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:24.011][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:24.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:24.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:24.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:24.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:24.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:24.023][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:24.023][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.023][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:24.024][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:24.024][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.024][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.DEBUG[2024-11-05 05:57:24.026][self$setPropertyValue] Setting property "parsing.expr" to "ids".
biodb.DEBUG[2024-11-05 05:57:24.026][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.026][self$setPropertyValue] Setting property "parsing.expr" to "mz".
biodb.TRACE[2024-11-05 05:57:24.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:24.067][self$setFieldValue] Cannot set more that one value (pos, neg) into single value field "ms.mode" for entry Mass spectra CSV File ZAP.
biodb.INFO [2024-11-05 05:57:24.086][biodb::testThat]
biodb.INFO [2024-11-05 05:57:24.088][biodb::testThat] Running test function test.getMzValues.without.peak.attr (" We can search for precursor M/Z values without peak.attr column defined. ").
biodb.INFO [2024-11-05 05:57:24.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:24.090][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:24.096][super$initialize] Initialize connector mass.csv.file.3.
biodb.DEBUG[2024-11-05 05:57:24.099][biodb$getFactory()$createConn] Creating new connector mass.csv.file.3 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:24.101][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.108][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.110][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.117][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.117][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.119][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:24.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:24.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.127][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.127][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.127][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.128][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.136][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.136][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.136][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.136][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.137][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.154][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.154][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.154][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.154][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.154][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.156][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.163][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.165][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.167][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.168][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.170][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.171][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:24.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:24.175][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.TRACE[2024-11-05 05:57:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.189][private$checkFields] FALSE
biodb.INFO [2024-11-05 05:57:24.199][biodb::testThat]
biodb.INFO [2024-11-05 05:57:24.200][biodb::testThat] Running test function test.mass.csv.file.old.col.names (" Old column names are still recognized. ").
biodb.INFO [2024-11-05 05:57:24.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:24.203][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:24.209][super$initialize] Initialize connector mass.csv.file.4.
biodb.DEBUG[2024-11-05 05:57:24.211][biodb$getFactory()$createConn] Creating new connector mass.csv.file.4 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:24.213][self$setField] Set field compound.id to column(s) compoundid.
biodb.TRACE[2024-11-05 05:57:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: compound.id.
biodb.TRACE[2024-11-05 05:57:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: compound.id.
biodb.TRACE[2024-11-05 05:57:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.220][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.222][self$setField] Set field ms.mode to column(s) msmode.
biodb.TRACE[2024-11-05 05:57:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.229][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.229][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.231][self$setField] Set field peak.mztheo to column(s) mztheo.
biodb.TRACE[2024-11-05 05:57:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.239][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.239][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.239][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.240][self$setField] Set field peak.comp to column(s) peakcomp.
biodb.TRACE[2024-11-05 05:57:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.248][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.248][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.248][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.248][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.249][self$setField] Set field peak.attr to column(s) peakattr.
biodb.TRACE[2024-11-05 05:57:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.256][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.256][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.256][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.256][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.256][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.258][self$setField] Set field chrom.col.name to column(s) chromcol.
biodb.TRACE[2024-11-05 05:57:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.266][self$setPropertyValue] Setting property "parsing.expr" to "chromcol".
biodb.DEBUG[2024-11-05 05:57:24.267][self$setField] Set field chrom.rt to column(s) chromcolrt.
biodb.TRACE[2024-11-05 05:57:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "chromcol".
biodb.DEBUG[2024-11-05 05:57:24.275][self$setPropertyValue] Setting property "parsing.expr" to "chromcolrt".
biodb.DEBUG[2024-11-05 05:57:24.276][self$setField] Set field composition to column(s) compoundcomp.
biodb.TRACE[2024-11-05 05:57:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: composition.
biodb.TRACE[2024-11-05 05:57:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: composition.
biodb.TRACE[2024-11-05 05:57:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "chromcol".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "chromcolrt".
biodb.DEBUG[2024-11-05 05:57:24.283][self$setPropertyValue] Setting property "parsing.expr" to "compoundcomp".
biodb.DEBUG[2024-11-05 05:57:24.285][self$setField] Set field molecular.mass to column(s) compoundmass.
biodb.TRACE[2024-11-05 05:57:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "chromcol".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "chromcolrt".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "compoundcomp".
biodb.DEBUG[2024-11-05 05:57:24.292][self$setPropertyValue] Setting property "parsing.expr" to "compoundmass".
biodb.DEBUG[2024-11-05 05:57:24.294][self$setField] Set field name to column(s) fullnames.
biodb.TRACE[2024-11-05 05:57:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "compoundid".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "msmode".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "chromcol".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "chromcolrt".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "compoundcomp".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "compoundmass".
biodb.DEBUG[2024-11-05 05:57:24.301][self$setPropertyValue] Setting property "parsing.expr" to "fullnames".
biodb.INFO [2024-11-05 05:57:24.313][biodb::testThat]
biodb.INFO [2024-11-05 05:57:24.314][biodb::testThat] Running test function test.mass.csv.file.entry.peaks.table.col.names (" Peaks table of entry has official field names. ").
biodb.INFO [2024-11-05 05:57:24.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:24.317][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:24.323][super$initialize] Initialize connector mass.csv.file.5.
biodb.DEBUG[2024-11-05 05:57:24.325][biodb$getFactory()$createConn] Creating new connector mass.csv.file.5 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:24.327][conn$setField] Set field ms.mode to column(s) mode.
biodb.TRACE[2024-11-05 05:57:24.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.334][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.336][conn$setField] Set field peak.mztheo to column(s) mztheo.
biodb.TRACE[2024-11-05 05:57:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.343][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.343][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.345][conn$setField] Set field peak.attr to column(s) peakattr.
biodb.TRACE[2024-11-05 05:57:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.352][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.352][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.352][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.353][conn$setField] Set field peak.comp to column(s) peakcomp.
biodb.TRACE[2024-11-05 05:57:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.360][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.360][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.360][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.360][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.362][conn$setField] Set field peak.intensity to column(s) int.
biodb.TRACE[2024-11-05 05:57:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.369][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.369][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.369][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.369][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.369][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.371][conn$setField] Set field peak.relative.intensity to column(s) relint.
biodb.TRACE[2024-11-05 05:57:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.378][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.379][private$loadEntries] Creating entries from ids [1]: "BML80005".
biodb.DEBUG[2024-11-05 05:57:24.381][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:24.382][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:24.384][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:24.385][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:24.386][private$doGetEntryContentFromDb] Entry id: BML80005
biodb.DEBUG[2024-11-05 05:57:24.388][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.395][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.400][private$doGetEntryContentFromDb] Content of first entry: accession mode mztheo peakcomp peakattr int relint
BML80005 pos 219.1127765 CHON [(M+H)-(H2O)-(NH3)]+ 373076 999
biodb.DEBUG[2024-11-05 05:57:24.402][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:24.404][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:24.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:24.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:24.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:24.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:24.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.416][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.419][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.420][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.422][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.423][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "mode".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "mztheo".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "peakattr".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "peakcomp".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "int".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "relint".
biodb.DEBUG[2024-11-05 05:57:24.427][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2024-11-05 05:57:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.604][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:24.605][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:24.607][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:24.608][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:24.609][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.611][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.615][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.616][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.620][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.622][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.626][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.627][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.631][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.632][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.636][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.638][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.642][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.647][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.648][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.652][private$selectFields] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:24.654][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.655][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.659][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.661][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.665][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.666][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.670][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.671][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.675][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.677][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.681][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.682][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.686][private$selectFields] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:24.688][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:24.689][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.690][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.694][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.696][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.700][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.701][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.705][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.706][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.710][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.712][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.716][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.717][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.721][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.attr", "peak.comp", "peak.intensity", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:24.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:24.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:24.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:24.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.906][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:24.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:24.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:24.943][self$createEntryFromContent] Accession numbers: BML80005.
biodb.TRACE[2024-11-05 05:57:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:24.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:24.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.975][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:24.976][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:24.977][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:24.978][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:24.980][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.981][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:24.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.985][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.987][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:24.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.989][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.990][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.992][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:24.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:24.994][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:24.996][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.997][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:24.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.001][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.002][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.006][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.008][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.017][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.018][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.022][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.024][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.028][private$selectFields] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.029][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.030][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.034][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.036][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.040][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.041][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.045][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.047][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.051][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.052][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.056][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.057][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.061][private$selectFields] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.063][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.attr, peak.comp, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.064][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.066][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.068][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.069][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.071][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.073][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.075][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.076][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.080][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.082][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.085][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.087][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.091][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.092][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.096][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.attr", "peak.comp", "peak.intensity", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:25.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.208][biodb$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.209][biodb$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.211][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.212][biodb$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.213][biodb$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.215][biodb$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.216][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.217][biodb$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.219][biodb$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.220][biodb$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:25.221][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.223][biodb$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.224][biodb$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.226][biodb$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.227][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.228][biodb$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.230][biodb$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.231][biodb$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.232][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.234][biodb$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.235][biodb$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.237][biodb$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:25.238][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.239][biodb$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:25.258][biodb::testThat]
biodb.INFO [2024-11-05 05:57:25.259][biodb::testThat] Running test function test.mass.csv.file.mz.matching.limits (" M/Z matching limits (mz.min and mz.max) are respected. ").
biodb.INFO [2024-11-05 05:57:25.260][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:25.262][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:25.268][super$initialize] Initialize connector mass.csv.file.6.
biodb.DEBUG[2024-11-05 05:57:25.271][biodb$getFactory()$createConn] Creating new connector mass.csv.file.6 for database class mass.csv.file .
biodb.TRACE[2024-11-05 05:57:25.273][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.275][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.279][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.280][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.283][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.285][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2024-11-05 05:57:25.287][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.289][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.293][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.294][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.297][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.299][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:25.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.306][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.308][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.316][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.316][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.318][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.325][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.325][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.325][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.327][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:57:25.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.334][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.334][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.334][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.334][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.336][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.344][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.344][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.344][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.344][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.344][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.346][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:25.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.354][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.355][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.363][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.364][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:25.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.372][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:57:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.382][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.383][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.385][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.387][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.388][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.390][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.391][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:25.393][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:25.395][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:25.396][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2024-11-05 05:57:25.399][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:25.402][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:25.404][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2024-11-05 05:57:25.405][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:25.407][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:25.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:25.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:25.411][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2024-11-05 05:57:25.416][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name
C1 pos 112.07569 P9Z6W410 O [(M+H)-(H2O)-(NH3)]+ J114L6M62O2 146.10553 Blablaine
biodb.DEBUG[2024-11-05 05:57:25.419][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:25.420][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:25.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:25.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:25.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:25.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:25.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:25.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:25.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:25.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:25.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:25.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.616][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:25.618][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:25.619][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:25.620][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:25.622][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.641][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.643][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.647][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.648][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.652][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.653][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.659][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.661][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.663][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:25.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:25.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:25.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:25.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.679][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.680][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.684][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.685][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.687][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.689][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.691][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.692][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.696][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.698][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.702][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.703][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.707][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.708][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:25.710][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.711][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.715][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.717][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.721][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.722][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.726][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.727][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.731][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:25.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:25.916][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2024-11-05 05:57:25.917][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:25.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:25.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:25.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:25.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:25.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.938][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:25.939][private$selectFields]
biodb.TRACE[2024-11-05 05:57:25.940][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:25.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:25.943][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:25.944][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:25.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:25.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.950][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.951][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:25.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.955][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.957][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:25.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.959][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.961][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.962][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:25.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.966][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.968][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:25.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:25.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:25.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.977][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:25.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.982][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:25.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:25.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.988][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.989][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:25.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:25.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:25.993][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.995][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:25.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.007][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.009][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.016][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.017][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.021][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.023][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.027][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.029][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.033][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.034][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.054][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.056][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.060][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.061][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.064][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:26.241][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:26.242][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:26.247][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.248][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.252][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.254][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.256][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:26.258][private$matchingMzWithSpectra] M/Z values to process [1]: "112.075689997802"
biodb.TRACE[2024-11-05 05:57:26.260][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.262][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.266][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.267][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:26.279][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.075129619352, 112.076250376252].
biodb.DEBUG[2024-11-05 05:57:26.281][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:26.284][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:26.286][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:26.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:26.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:26.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:26.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:26.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.306][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:26.307][private$selectFields]
biodb.TRACE[2024-11-05 05:57:26.309][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:26.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:26.311][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.313][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.318][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.319][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.323][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.325][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.329][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.330][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.334][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.335][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.339][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.350][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.355][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.357][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.360][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.362][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.366][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.376][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.377][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.383][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.384][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.388][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.389][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.393][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.395][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.398][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.400][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.404][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.414][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.419][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.421][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.424][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.426][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.430][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:26.600][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:26.602][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:26.606][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.608][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.612][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.613][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.616][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:26.617][private$matchingMzWithSpectra] M/Z values to process [1]: "112.075129624352"
biodb.TRACE[2024-11-05 05:57:26.619][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.621][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.625][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.627][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:26.638][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.074569248704, 112.07569].
biodb.DEBUG[2024-11-05 05:57:26.641][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:26.644][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:26.645][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:26.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:26.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:26.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:26.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:26.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.666][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:26.667][private$selectFields]
biodb.TRACE[2024-11-05 05:57:26.668][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:26.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:26.671][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.672][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.678][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.679][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.683][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.684][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.688][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.690][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.694][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.695][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.699][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.703][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.708][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.710][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.715][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.717][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.721][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.722][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.726][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.727][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:26.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.743][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.744][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.747][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.748][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.749][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.752][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.753][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.755][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.757][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.758][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.760][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.768][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.769][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.778][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.780][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.781][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.785][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.786][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.790][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:26.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:26.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:26.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:26.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:26.967][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:26.969][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:26.973][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.975][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.979][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.981][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.984][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:26.985][private$matchingMzWithSpectra] M/Z values to process [1]: "112.075128624352"
biodb.TRACE[2024-11-05 05:57:26.987][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.989][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.993][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.995][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:26.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:26.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.006][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.074568248709, 112.075688999995].
biodb.DEBUG[2024-11-05 05:57:27.009][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.012][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2024-11-05 05:57:27.017][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.019][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.023][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.024][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.027][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.029][private$matchingMzWithSpectra] M/Z values to process [1]: "112.075128624352"
biodb.TRACE[2024-11-05 05:57:27.031][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.033][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.037][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.039][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.050][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.074568248709, 112.075688999995].
biodb.DEBUG[2024-11-05 05:57:27.053][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.056][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2024-11-05 05:57:27.062][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.064][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.068][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.069][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.072][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.074][private$matchingMzWithSpectra] M/Z values to process [1]: "112.076250371252"
biodb.TRACE[2024-11-05 05:57:27.076][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.077][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.081][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.083][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.094][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07568999, 112.076810752504].
biodb.DEBUG[2024-11-05 05:57:27.097][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.100][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:27.101][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:27.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:27.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:27.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:27.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:27.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.131][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:27.132][private$selectFields]
biodb.TRACE[2024-11-05 05:57:27.133][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:27.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:27.136][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:27.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.143][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.144][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.148][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.150][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.154][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.155][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.159][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.161][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.170][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.174][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.175][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.181][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.182][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.186][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.188][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.192][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:27.193][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:27.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.200][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.201][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.205][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.207][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.211][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.212][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.216][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.218][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.238][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.240][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.244][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.245][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.249][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:27.426][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:27.428][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:27.433][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.434][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.438][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.440][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.442][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.444][private$matchingMzWithSpectra] M/Z values to process [1]: "112.076251371252"
biodb.TRACE[2024-11-05 05:57:27.446][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.448][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.452][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.453][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.465][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.075690989995, 112.076811752509].
biodb.DEBUG[2024-11-05 05:57:27.467][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.470][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2024-11-05 05:57:27.475][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.486][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.490][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.492][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.494][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.496][private$matchingMzWithSpectra] M/Z values to process [1]: "112.076251371252"
biodb.TRACE[2024-11-05 05:57:27.498][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.499][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.504][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.505][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.516][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.075690989995, 112.076811752509].
biodb.DEBUG[2024-11-05 05:57:27.519][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.522][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:27.532][biodb::testThat]
biodb.INFO [2024-11-05 05:57:27.533][biodb::testThat] Running test function test.mass.csv.file.ms.mode.values (" We can set additional values for MS mode. ").
biodb.INFO [2024-11-05 05:57:27.534][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:27.536][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:27.539][biodb$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.541][biodb$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.542][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.543][biodb$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:27.545][biodb$getEntryFields()$get("ms.mode" ...] Field "ms.mode" already uses value "pos" for its allowed values, with key "pos".
biodb.TRACE[2024-11-05 05:57:27.547][biodb$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.548][biodb$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.550][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.551][biodb$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:27.571][biodb$getEntryFields()$get("ms.mode" ...] Field "ms.mode" already uses value "pos" for its allowed values, but with key "pos" instead of key "neg".
biodb.TRACE[2024-11-05 05:57:27.586][biodb$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.588][biodb$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.589][biodb$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.590][biodb$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.594][super$initialize] Initialize connector mass.csv.file.7.
biodb.DEBUG[2024-11-05 05:57:27.597][biodb$getFactory()$createConn] Creating new connector mass.csv.file.7 for database class mass.csv.file .
biodb.TRACE[2024-11-05 05:57:27.600][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.601][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.605][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.607][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.609][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.611][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2024-11-05 05:57:27.613][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.615][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.619][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.620][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.623][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.624][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.631][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.633][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.641][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.641][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.643][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.650][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.650][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.650][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.652][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:57:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.659][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.659][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.659][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.659][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.660][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.668][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.668][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.668][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.668][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.668][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.669][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.676][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.678][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.685][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.687][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.694][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:57:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.704][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.705][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.707][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.709][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.710][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.712][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.713][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:27.715][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:27.717][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:27.718][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2024-11-05 05:57:27.721][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:27.724][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:27.726][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2024-11-05 05:57:27.727][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:27.729][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:27.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:27.732][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:27.733][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2024-11-05 05:57:27.738][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name
C1 pos 112.07569 P9Z6W410 O [(M+H)-(H2O)-(NH3)]+ J114L6M62O2 146.10553 Blablaine
biodb.DEBUG[2024-11-05 05:57:27.740][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:27.742][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:27.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:27.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:27.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:27.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:27.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:27.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.950][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:27.951][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:27.952][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:27.954][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:27.956][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:27.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:27.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.961][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.963][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:27.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.967][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.968][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.972][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.974][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:27.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.978][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.979][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:27.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:27.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:27.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.989][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:27.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:27.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:27.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:27.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:27.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.000][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.001][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.005][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:28.007][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.008][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.012][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.014][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.018][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.019][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.023][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.025][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.029][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:28.030][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:28.032][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.033][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.036][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.037][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.038][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.042][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.044][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.048][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.049][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.053][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:28.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:28.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:28.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.140][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:28.249][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2024-11-05 05:57:28.251][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:28.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:28.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:28.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:28.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:28.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.271][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:28.272][private$selectFields]
biodb.TRACE[2024-11-05 05:57:28.274][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:28.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:28.276][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.283][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.284][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.288][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.290][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.292][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.294][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.295][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.299][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.301][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.304][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.315][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.320][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.322][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.326][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.327][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.331][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.333][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.339][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.341][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.345][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.346][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.350][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.351][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.355][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.357][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.377][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.378][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.382][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.384][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.388][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:28.563][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:28.565][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:28.569][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.571][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.575][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.576][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.579][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:28.581][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2024-11-05 05:57:28.583][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.584][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.588][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.598][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:28.610][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2024-11-05 05:57:28.612][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:28.615][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:28.617][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:28.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:28.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:28.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:28.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:28.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:28.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.638][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:28.640][private$selectFields]
biodb.TRACE[2024-11-05 05:57:28.641][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:28.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:28.644][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.651][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.652][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.655][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.656][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.658][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.662][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.663][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.667][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.668][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.672][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.683][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.689][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.690][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.694][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.696][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.700][private$selectFields] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.701][private$organizeFieldsByGroups] Fields [10]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:28.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.708][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.709][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.713][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.715][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.719][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.720][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.724][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.725][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.729][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.733][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.740][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.746][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.747][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.751][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.752][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.756][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:28.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:28.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:28.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 10]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:28.956][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:28.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:28.967][biodb::testThat]
biodb.INFO [2024-11-05 05:57:28.969][biodb::testThat] Running test function test.mass.csv.file.cache.confusion (" Two different databases do not use the same cache files. ").
biodb.INFO [2024-11-05 05:57:28.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:28.972][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:28.980][super$initialize] Initialize connector mass.csv.file.8.
biodb.DEBUG[2024-11-05 05:57:28.983][biodb$getFactory()$createConn] Creating new connector mass.csv.file.8 for database class mass.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.confusion_db_A.tsv".
biodb.INFO [2024-11-05 05:57:28.985][private$doWrite] Write all entries into "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.confusion_db_A.tsv".
biodb.DEBUG[2024-11-05 05:57:29.003][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.012][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.014][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.021][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.021][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.023][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.031][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.031][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.031][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.032][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.040][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.040][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.040][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.040][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.042][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.049][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.049][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.049][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.049][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.049][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.051][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.062][private$loadEntries] Creating entries from ids [1]: "K".
biodb.DEBUG[2024-11-05 05:57:29.063][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:29.065][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.confusion_db_A.tsv".
biodb.DEBUG[2024-11-05 05:57:29.067][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:29.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:29.070][private$doGetEntryContentFromDb] Entry id: K
biodb.DEBUG[2024-11-05 05:57:29.075][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode ms.level peak.mztheo peak.intensity peak.relative.intensity
K pos 1 219.1127765 373076 999
biodb.DEBUG[2024-11-05 05:57:29.077][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:29.079][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:29.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:29.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:29.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:29.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:29.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.093][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.095][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.096][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.098][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.100][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:29.102][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.TRACE[2024-11-05 05:57:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.268][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:29.269][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:29.271][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:29.272][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:29.273][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.279][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.280][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.284][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.286][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.290][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.292][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.295][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.297][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.301][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.302][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.305][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.306][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.308][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.312][private$selectFields] Fields [4]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:29.313][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.315][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.319][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.320][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.324][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.326][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.330][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.331][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.335][private$selectFields] Fields [4]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:29.336][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:29.338][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.339][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.343][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.345][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.349][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.350][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.354][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.356][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.360][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.intensity", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:29.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.530][self$createEntryFromContent] Accession numbers: K.
biodb.DEBUG[2024-11-05 05:57:29.532][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:29.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:29.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:29.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:29.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:29.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.554][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:29.556][private$selectFields]
biodb.TRACE[2024-11-05 05:57:29.557][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:29.558][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:29.560][private$selectFields] Fields [8]: "accession, ms.mode, ms.level, peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:29.561][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.567][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.568][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.572][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.574][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.578][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.580][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.584][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.585][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.589][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.591][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.595][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.596][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.600][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.602][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.606][private$selectFields] Fields [8]: "accession, ms.mode, ms.level, peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:29.607][private$organizeFieldsByGroups] Fields [8]: "accession, ms.mode, ms.level, peak.mztheo, peak.intensity, peak.relative.intensity, peak.mz, mass.csv.file.id"
biodb.TRACE[2024-11-05 05:57:29.609][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.614][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.616][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.620][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.621][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.625][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.627][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.631][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.632][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.636][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.638][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.642][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.643][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.647][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.649][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.653][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "ms.level", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.intensity", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:29.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:29.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, ms.mode, ms.level, mass.csv.file.id, peak.mztheo, ...] [K, pos, 1, K, 219.1127765, ...].
biodb.DEBUG[2024-11-05 05:57:29.805][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:29.806][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:29.809][biodb$getFactory()$deleteConn] Connector "mass.csv.file.8" deleted.
biodb.DEBUG[2024-11-05 05:57:29.813][super$initialize] Initialize connector mass.csv.file.8.
biodb.DEBUG[2024-11-05 05:57:29.816][biodb$getFactory()$createConn] Creating new connector mass.csv.file.8 for database class mass.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.confusion_db_B.tsv".
biodb.DEBUG[2024-11-05 05:57:29.818][private$loadEntries] Creating entries from ids [1]: "K".
biodb.DEBUG[2024-11-05 05:57:29.820][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:29.821][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.confusion_db_B.tsv".
biodb.DEBUG[2024-11-05 05:57:29.823][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:29.824][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:29.826][private$doGetEntryContentFromDb] Entry id: K
biodb.INFO [2024-11-05 05:57:29.827][private$initDb] Creating empty database.
biodb.DEBUG[2024-11-05 05:57:29.829][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.836][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.839][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2024-11-05 05:57:29.841][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:29.843][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:29.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:29.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:29.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:29.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:29.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:29.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:29.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.899][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:29.901][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-05 05:57:29.908][biodb$getFactory()$deleteConn] Connector "mass.csv.file.8" deleted.
biodb.INFO [2024-11-05 05:57:29.913][biodb::testThat]
biodb.INFO [2024-11-05 05:57:29.915][biodb::testThat] Running test function test.mass.csv.file.searchMsPeaks.column.sorting (" Sorting of columns of result frame works well in searchMsPeaks(). ").
biodb.INFO [2024-11-05 05:57:29.916][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:29.918][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:29.926][super$initialize] Initialize connector mass.csv.file.8.
biodb.DEBUG[2024-11-05 05:57:29.929][biodb$getFactory()$createConn] Creating new connector mass.csv.file.8 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:29.931][private$matchingMzWithSpectra] M/Z values to process [2]: "112.07569, 208.8274"
biodb.DEBUG[2024-11-05 05:57:29.934][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:29.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.941][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.943][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.951][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.952][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.960][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.960][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.960][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.961][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2024-11-05 05:57:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.969][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.969][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.969][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.969][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:29.970][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.978][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.978][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.978][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.978][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:29.978][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:29.979][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:29.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:29.986][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:29.988][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2024-11-05 05:57:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:29.996][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:29.997][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.004][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.006][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2024-11-05 05:57:30.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.013][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.015][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2024-11-05 05:57:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.022][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.026][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.027][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.029][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.030][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.032][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.034][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.035][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.037][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.038][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:30.040][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:30.042][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:30.043][private$selectByRange] Filtering on field "peak.mztheo", with range: [102.07569, 122.07569].
biodb.DEBUG[2024-11-05 05:57:30.046][private$selectByRange] 2 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:30.050][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2024-11-05 05:57:30.051][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2024-11-05 05:57:30.053][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:30.055][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:30.056][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:30.057][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:30.059][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2024-11-05 05:57:30.065][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name inchi inchikey
C1 pos 112.07569 P9Z6W410 O [(M+H)-(H2O)-(NH3)]+ J114L6M62O2 146.10553 Blablaine InChI=1S/C7H8N4O3/c1-10-4-3(8-6(10)13)5(12)11(2)7(14)9-4/h1-2H3,(H,8,13)(H,9,14) NA
biodb.DEBUG[2024-11-05 05:57:30.067][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:30.068][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:30.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:30.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:30.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:30.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:30.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.288][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:30.289][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:30.290][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:30.292][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:30.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.298][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.300][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.304][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.305][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.309][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.311][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.315][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.316][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.320][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.331][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.342][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.343][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.347][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:30.349][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.350][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.354][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.356][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.360][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.361][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.365][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.367][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.371][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:30.372][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:30.373][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.375][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.379][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.380][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.384][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.386][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.390][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.391][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.395][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:30.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:30.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:30.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:30.591][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2024-11-05 05:57:30.592][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:30.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:30.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:30.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:30.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:30.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.613][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:30.615][private$selectFields]
biodb.TRACE[2024-11-05 05:57:30.616][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:30.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:30.619][private$selectFields] Fields [11]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, peak.mz, ..."
biodb.TRACE[2024-11-05 05:57:30.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.626][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.627][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.631][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.633][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.637][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.639][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.643][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.644][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.648][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.671][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.673][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.677][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.678][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.682][private$selectFields] Fields [11]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, peak.mz, ..."
biodb.TRACE[2024-11-05 05:57:30.684][private$organizeFieldsByGroups] Fields [11]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, peak.mz, ..."
biodb.TRACE[2024-11-05 05:57:30.685][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.689][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.690][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.692][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.696][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.697][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.701][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.703][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.707][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.708][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.712][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.718][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.722][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.723][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.733][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.734][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.736][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.740][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.741][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.745][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "inchi", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:30.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, ms.mode, formula, molecular.mass, name, ...] [C1, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2024-11-05 05:57:30.955][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:30.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:30.960][private$selectByRange] Filtering on field "peak.mztheo", with range: [198.8274, 218.8274].
biodb.DEBUG[2024-11-05 05:57:30.963][private$selectByRange] 2 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:30.966][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C2"
biodb.DEBUG[2024-11-05 05:57:30.968][private$loadEntries] Creating entries from ids [1]: "C2".
biodb.DEBUG[2024-11-05 05:57:30.969][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:30.972][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:30.973][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:30.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:30.976][private$doGetEntryContentFromDb] Entry id: C2
biodb.DEBUG[2024-11-05 05:57:30.982][private$doGetEntryContentFromDb] Content of first entry: accession ms.mode peak.mztheo peak.comp peak.attr formula molecular.mass name inchi inchikey
C2 pos 208.8274 Y2Z6W410 O [(M+H)-(H2O)]+ T114L6M62O2 146.10553 Sloopaine InChI=1S/C7H8N4O3/c1-10-4-3(8-6(10)13)5(12)11(2)7(14)9-4/h1-2H3,(H,8,13)(H,9,14) FRYVQXCDSBCDAU-AKDOOQIZSA-N
biodb.DEBUG[2024-11-05 05:57:30.985][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:30.986][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:30.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:30.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:30.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:30.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:30.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.165][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:31.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.213][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:31.214][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:31.216][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:31.217][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:31.219][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.224][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.226][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.230][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.231][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.235][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.237][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.241][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.243][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.258][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.285][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.287][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.291][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:31.292][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.294][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.298][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.299][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.304][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.305][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.310][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.311][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.316][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:31.317][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:31.318][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.320][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.324][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.326][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.329][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.330][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.332][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.336][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.338][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.342][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.500][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:31.540][self$createEntryFromContent] Accession numbers: C2.
biodb.DEBUG[2024-11-05 05:57:31.542][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:31.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:31.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:31.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:31.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:31.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.563][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:31.564][private$selectFields]
biodb.TRACE[2024-11-05 05:57:31.566][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:31.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:31.568][private$selectFields] Fields [12]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:31.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.575][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.577][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.581][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.582][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.585][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.586][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.588][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.592][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.594][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.598][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.609][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.626][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.627][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.631][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.633][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.637][private$selectFields] Fields [12]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:31.638][private$organizeFieldsByGroups] Fields [12]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:31.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.645][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.647][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.660][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.662][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.666][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.667][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.671][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.673][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.677][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.682][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.688][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.703][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.704][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.706][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.708][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.710][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.711][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.715][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "inchi", "inchikey", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:31.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:31.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, ms.mode, formula, molecular.mass, name, ...] [C2, pos, T114L6M62O2, 146.10553, Sloopaine, ...].
biodb.DEBUG[2024-11-05 05:57:31.942][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:31.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:31.955][biodb::testThat]
biodb.INFO [2024-11-05 05:57:31.956][biodb::testThat] Running test function test.mass.csv.file.cache.id (" Cache ID is set correctly. ").
biodb.INFO [2024-11-05 05:57:31.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:31.959][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:31.964][super$initialize] Initialize connector mass.csv.file.9.
biodb.DEBUG[2024-11-05 05:57:31.967][biodb$getFactory()$createConn] Creating new connector mass.csv.file.9 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:31.977][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.id_db.tsv".
biodb.DEBUG[2024-11-05 05:57:31.978][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:31.980][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.INFO [2024-11-05 05:57:31.989][biodb$getFactory()$deleteConn] Connector "mass.csv.file.9" deleted.
biodb.DEBUG[2024-11-05 05:57:31.993][super$initialize] Initialize connector mass.csv.file.9.
biodb.DEBUG[2024-11-05 05:57:31.997][biodb$getFactory()$createConn] Creating new connector mass.csv.file.9 for database class mass.csv.file , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.mass.csv.file.cache.id_db.tsv".
biodb.INFO [2024-11-05 05:57:32.001][biodb$getFactory()$deleteConn] Connector "mass.csv.file.9" deleted.
biodb.INFO [2024-11-05 05:57:32.006][biodb::testThat]
biodb.INFO [2024-11-05 05:57:32.008][biodb::testThat] Running test function test_msmsSearch_R4.0_non_regression (" R 4.0 error "NA's are not allowed in y !" with msmsSearch()
call does not come back. ").
biodb.INFO [2024-11-05 05:57:32.009][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:32.010][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:32.017][super$initialize] Initialize connector mass.csv.file.9.
biodb.DEBUG[2024-11-05 05:57:32.020][biodb$getFactory()$createConn] Creating new connector mass.csv.file.9 for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_msms.tsv".
biodb.TRACE[2024-11-05 05:57:32.024][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.026][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.030][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.032][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.047][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.049][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.053][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.054][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.057][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:32.058][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_msms.tsv".
biodb.DEBUG[2024-11-05 05:57:32.062][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.069][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.071][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.078][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.078][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.080][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.088][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.088][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.088][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.090][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.097][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.097][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.097][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.097][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.099][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.106][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.106][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.106][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.106][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.106][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.108][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.115][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.117][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.124][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.126][self$setField] Set field peak.formula to column(s) peak.formula.
biodb.TRACE[2024-11-05 05:57:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.134][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.136][self$setField] Set field msprecannot to column(s) msprecannot.
biodb.TRACE[2024-11-05 05:57:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.143][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.145][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2024-11-05 05:57:32.147][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.153][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.154][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2024-11-05 05:57:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.162][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.TRACE[2024-11-05 05:57:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.173][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.174][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.176][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.178][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.179][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.181][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.182][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.184][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.186][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.188][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:32.189][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2024-11-05 05:57:32.191][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:32.193][private$selectByRange] Filtering on field "peak.mztheo", with range: [286.0438, 286.2438].
biodb.DEBUG[2024-11-05 05:57:32.196][private$selectByRange] 14 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:32.203][self$searchForMassSpectra] Found 2 spectra: [2]: "AU158001, AU158002"
biodb.DEBUG[2024-11-05 05:57:32.204][self$searchForMassSpectra] Found 2 spectra: [2]: "AU158001, AU158002"
biodb.DEBUG[2024-11-05 05:57:32.206][private$loadEntries] Creating entries from ids [2]: "AU158001, AU158002".
biodb.DEBUG[2024-11-05 05:57:32.207][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:57:32.209][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_msms.tsv".
biodb.DEBUG[2024-11-05 05:57:32.211][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:32.212][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:32.214][private$doGetEntryContentFromDb] Entry id: AU158001, AU158002
biodb.DEBUG[2024-11-05 05:57:32.222][private$doGetEntryContentFromDb] Content of first entry: accession formula ms.mode ms.level peak.mztheo peak.intensity peak.relative.intensity peak.formula msprecannot msprecmz peak.attr
AU158001 C17H19NO3 pos 2 286.1456 1073792 100 C17H20NO3+ [M+H]+ 286.1438 [M+H]+
AU158001 C17H19NO3 pos 2 287.1488 157332 14.61461 C16[13]CH20NO3+ [M+H]+ 286.1438 NA
AU158001 C17H19NO3 pos 2 288.1514 15604 1.401401 C15[13]C2H20NO3+ [M+H]+ 286.1438 NA
biodb.DEBUG[2024-11-05 05:57:32.225][self$createEntryFromContent] Creating Mass spectra CSV File entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:57:32.227][self$createEntryFromContent] Parsing 2 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:32.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:32.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:32.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:32.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:32.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.473][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:32.475][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:32.476][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:32.477][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:32.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.485][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.490][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.492][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.496][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.497][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.502][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.503][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.507][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.509][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.513][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.514][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.518][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.520][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.524][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.526][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.530][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.531][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.535][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.537][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.541][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.543][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.547][private$selectFields] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:32.548][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.550][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.554][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.555][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.559][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.561][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.565][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.566][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.570][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.572][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.576][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.577][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.581][private$selectFields] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:32.583][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:32.584][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.586][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.590][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.591][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.594][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.595][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.597][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.601][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.602][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.607][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.608][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.612][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.614][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.618][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.intensity", "peak.relative.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:32.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:32.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:32.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:32.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:32.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:32.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.031][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:33.033][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:33.034][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:33.035][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:33.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:33.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.046][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.048][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:33.049][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.053][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:33.055][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:33.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.059][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.060][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.064][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.066][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.068][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.070][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.071][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.075][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.077][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.081][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:33.082][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.086][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:33.088][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:33.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.092][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.093][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.097][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.099][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.103][private$selectFields] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:33.104][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.106][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.110][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.111][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.115][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.117][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.121][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.122][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.126][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.128][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.132][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.133][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.137][private$selectFields] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:33.139][private$organizeFieldsByGroups] Fields [6]: "peak.mztheo, peak.intensity, peak.relative.intensity, peak.formula, peak.attr, peak.mz"
biodb.TRACE[2024-11-05 05:57:33.140][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.141][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.145][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.147][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.151][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.152][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.157][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.158][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.162][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.164][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.168][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.169][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.183][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.intensity", "peak.relative.intensity", "peak.formula", "peak.attr", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:33.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:33.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.382][self$createEntryFromContent] Accession numbers: AU158001, AU158002.
biodb.TRACE[2024-11-05 05:57:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.417][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.418][private$selectFields]
biodb.TRACE[2024-11-05 05:57:33.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:33.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:33.422][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.424][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.425][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.429][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.431][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.435][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.436][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.440][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.441][private$organizeFieldsByGroups] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.443][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.444][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.447][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.449][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.450][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.454][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.456][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.460][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mz", "peak.relative.intensity", "peak.intensity"))"
biodb.TRACE[2024-11-05 05:57:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.597][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.599][private$selectFields]
biodb.TRACE[2024-11-05 05:57:33.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-05 05:57:33.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:33.603][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.604][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.606][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.610][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.612][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.616][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.617][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.620][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.621][private$selectFields] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.623][private$organizeFieldsByGroups] Fields [3]: "peak.mz, peak.relative.intensity, peak.intensity"
biodb.TRACE[2024-11-05 05:57:33.624][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.626][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.628][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.630][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.631][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.635][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.637][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.641][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mz", "peak.relative.intensity", "peak.intensity"))"
biodb.TRACE[2024-11-05 05:57:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:33.704][biodb::testThat]
biodb.INFO [2024-11-05 05:57:33.706][biodb::testThat] Running test function test_matchingField (" We can defined the M/Z matching field. ").
biodb.INFO [2024-11-05 05:57:33.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:33.708][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:33.714][super$initialize] Initialize connector mass.csv.file.10.
biodb.DEBUG[2024-11-05 05:57:33.717][biodb$getFactory()$createConn] Creating new connector mass.csv.file.10 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:33.720][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:33.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.727][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.728][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.731][private$loadEntries] Creating entries from ids [1]: "1".
biodb.DEBUG[2024-11-05 05:57:33.732][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:33.734][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:33.736][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:33.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:33.738][private$doGetEntryContentFromDb] Entry id: 1
biodb.DEBUG[2024-11-05 05:57:33.742][private$doGetEntryContentFromDb] Content of first entry: accession
1
biodb.DEBUG[2024-11-05 05:57:33.744][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:33.745][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:33.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:33.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:33.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:33.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:33.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:33.774][super$initialize] Initialize connector mass.csv.file.11.
biodb.DEBUG[2024-11-05 05:57:33.777][biodb$getFactory()$createConn] Creating new connector mass.csv.file.11 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:33.780][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.787][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.789][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.796][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.796][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.798][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.799][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.799][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.801][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.806][private$selectByRange] Filtering on field "peak.mztheo", with range: [132.12, 132.12].
biodb.DEBUG[2024-11-05 05:57:33.808][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:33.810][self$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:33.812][conn$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:33.817][private$selectByRange] Filtering on field "peak.mztheo", with range: [133.12, 133.12].
biodb.DEBUG[2024-11-05 05:57:33.819][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:33.821][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:33.822][conn$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:33.829][super$initialize] Initialize connector mass.csv.file.12.
biodb.DEBUG[2024-11-05 05:57:33.833][biodb$getFactory()$createConn] Creating new connector mass.csv.file.12 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:33.835][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.842][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.844][self$setField] Set field peak.mzexp to column(s) peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.852][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.852][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.854][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.854][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.855][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.855][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.857][self$setPropertyValue] Setting property "matching.fields" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.862][private$selectByRange] Filtering on field "peak.mzexp", with range: [132.12, 132.12].
biodb.DEBUG[2024-11-05 05:57:33.864][private$selectByRange] 1 values to filter on field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:33.867][self$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:33.868][conn$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:33.873][private$selectByRange] Filtering on field "peak.mzexp", with range: [133.12, 133.12].
biodb.DEBUG[2024-11-05 05:57:33.875][private$selectByRange] 1 values to filter on field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:33.878][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:33.879][conn$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:33.886][super$initialize] Initialize connector mass.csv.file.13.
biodb.DEBUG[2024-11-05 05:57:33.889][biodb$getFactory()$createConn] Creating new connector mass.csv.file.13 for database class mass.csv.file .
biodb.DEBUG[2024-11-05 05:57:33.892][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.899][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.901][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.908][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.908][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.910][self$setField] Set field peak.mzexp to column(s) peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:33.917][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.917][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.917][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.919][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.919][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.919][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.920][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.920][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.920][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.922][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:33.922][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:33.922][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:33.925][private$loadEntries] Creating entries from ids [1]: "1".
biodb.DEBUG[2024-11-05 05:57:33.926][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:33.928][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2024-11-05 05:57:33.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:33.931][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:33.932][private$doGetEntryContentFromDb] Entry id: 1
biodb.DEBUG[2024-11-05 05:57:33.936][private$doGetEntryContentFromDb] Content of first entry: accession peak.mztheo peak.mzexp
1 132.121 132.1243
biodb.DEBUG[2024-11-05 05:57:33.938][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:33.939][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:33.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:33.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:33.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:33.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:33.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:33.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.084][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:34.085][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:34.087][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:34.088][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:34.089][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.094][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.095][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.096][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.100][ef$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.102][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.106][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.107][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.112][private$selectFields] Fields [3]: "peak.mztheo, peak.mzexp, peak.mz"
biodb.TRACE[2024-11-05 05:57:34.113][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.114][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.119][ef$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.120][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.124][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.126][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.130][private$selectFields] Fields [3]: "peak.mztheo, peak.mzexp, peak.mz"
biodb.TRACE[2024-11-05 05:57:34.131][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.mzexp, peak.mz"
biodb.TRACE[2024-11-05 05:57:34.133][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.134][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.138][ef$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.140][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.143][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.144][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.146][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.150][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.mzexp", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:34.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:34.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.252][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:34.291][self$createEntryFromContent] Accession numbers: 1.
biodb.TRACE[2024-11-05 05:57:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:34.304][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.WARN [2024-11-05 05:57:34.306][conn$getMatchingMzField] Field "peak.mztheo" has been automatically chosen among several possibilities (peak.mztheo, peak.mzexp) for matching M/Z values. Use setMatchingMzField() method explicitly to avoid this warning in the future.
biodb.DEBUG[2024-11-05 05:57:34.312][private$selectByRange] Filtering on field "peak.mztheo", with range: [132.121, 132.121].
biodb.DEBUG[2024-11-05 05:57:34.314][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:34.317][self$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:34.318][conn$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:34.323][private$selectByRange] Filtering on field "peak.mztheo", with range: [133.121, 133.121].
biodb.DEBUG[2024-11-05 05:57:34.325][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:34.328][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.329][conn$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.334][private$selectByRange] Filtering on field "peak.mztheo", with range: [132.1243, 132.1243].
biodb.DEBUG[2024-11-05 05:57:34.336][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:34.339][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.349][conn$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.353][self$setPropertyValue] Setting property "matching.fields" to "peak.mzexp".
biodb.DEBUG[2024-11-05 05:57:34.358][private$selectByRange] Filtering on field "peak.mzexp", with range: [132.121, 132.121].
biodb.DEBUG[2024-11-05 05:57:34.360][private$selectByRange] 1 values to filter on field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:34.363][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.364][conn$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.369][private$selectByRange] Filtering on field "peak.mzexp", with range: [132.1243, 132.1243].
biodb.DEBUG[2024-11-05 05:57:34.371][private$selectByRange] 1 values to filter on field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:34.374][self$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:34.375][conn$searchForMassSpectra] Found 1 spectra: [1]: "1"
biodb.DEBUG[2024-11-05 05:57:34.380][private$selectByRange] Filtering on field "peak.mzexp", with range: [133.1243, 133.1243].
biodb.DEBUG[2024-11-05 05:57:34.382][private$selectByRange] 1 values to filter on field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:34.384][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:34.386][conn$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:34.392][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:57:34.394][self$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2024-11-05 05:57:34.396][self$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.INFO [2024-11-05 05:57:34.397][self$deleteConn] Connector "mass.csv.file.2" deleted.
biodb.INFO [2024-11-05 05:57:34.399][self$deleteConn] Connector "mass.csv.file.3" deleted.
biodb.INFO [2024-11-05 05:57:34.400][self$deleteConn] Connector "mass.csv.file.4" deleted.
biodb.INFO [2024-11-05 05:57:34.402][self$deleteConn] Connector "mass.csv.file.5" deleted.
biodb.INFO [2024-11-05 05:57:34.403][self$deleteConn] Connector "mass.csv.file.6" deleted.
biodb.INFO [2024-11-05 05:57:34.405][self$deleteConn] Connector "mass.csv.file.7" deleted.
biodb.INFO [2024-11-05 05:57:34.406][self$deleteConn] Connector "mass.csv.file.8" deleted.
biodb.INFO [2024-11-05 05:57:34.408][self$deleteConn] Connector "mass.csv.file.9" deleted.
biodb.INFO [2024-11-05 05:57:34.410][self$deleteConn] Connector "mass.csv.file.10" deleted.
biodb.INFO [2024-11-05 05:57:34.411][self$deleteConn] Connector "mass.csv.file.11" deleted.
biodb.INFO [2024-11-05 05:57:34.413][self$deleteConn] Connector "mass.csv.file.12" deleted.
biodb.INFO [2024-11-05 05:57:34.414][self$deleteConn] Connector "mass.csv.file.13" deleted.
biodb.DEBUG[2024-11-05 05:57:34.415][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:57:34.417][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.421][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:34.432][biodb::testContext]
biodb.INFO [2024-11-05 05:57:34.434][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:34.435][biodb::testContext] Test context - MassSqlite generic tests
biodb.INFO [2024-11-05 05:57:34.437][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:34.438][biodb::testContext]
biodb.INFO [2024-11-05 05:57:34.440][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:57:34.443][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:57:34.448][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:34.449][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:57:34.451][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.456][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:57:34.457][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.462][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:57:34.464][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.469][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:57:34.470][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:57:34.472][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:57:34.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.477][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:57:34.478][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:57:34.479][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.484][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:57:34.486][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:57:34.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.491][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:57:34.492][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:57:34.494][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:57:34.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.499][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:57:34.500][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.505][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:57:34.507][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:57:34.508][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:57:34.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.513][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:34.515][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:57:34.516][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:57:34.517][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:57:34.519][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:57:34.520][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:57:34.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.525][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:57:34.527][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:57:34.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.532][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:57:34.533][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:57:34.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.538][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:57:34.540][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:57:34.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.545][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:57:34.547][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:57:34.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.552][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:57:34.553][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:57:34.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.558][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:34.560][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:57:34.565][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:57:34.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.570][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:57:34.572][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:57:34.573][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:57:34.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.579][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:57:34.581][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.583][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:57:34.584][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.585][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:34.587][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.588][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.590][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.591][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.592][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:34.594][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:34.595][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.597][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:57:34.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:34.600][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.601][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.602][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:34.602][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:34.602][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:34.602][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:34.602][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:34.604][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:34.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:34.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.613][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.615][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:34.616][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:34.617][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.619][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.620][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:57:34.623][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.625][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:34.626][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.627][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:34.629][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.632][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.633][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.635][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:34.636][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:34.638][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.639][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:57:34.641][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:34.642][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.644][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.645][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:34.645][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:34.645][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:34.645][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:34.645][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:34.647][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:34.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.649][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.651][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:34.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.653][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.655][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.656][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:34.659][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:34.660][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.662][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.663][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:57:34.666][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.667][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:57:34.669][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.670][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:34.672][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.673][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.675][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.677][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:34.679][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:34.680][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.682][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:57:34.683][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:34.685][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.686][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.687][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.689][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:34.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.693][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:34.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.699][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:34.701][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:34.703][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.704][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.706][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:57:34.708][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.710][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:34.711][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:34.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.716][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.717][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.719][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.720][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:34.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:34.734][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.736][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:57:34.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:34.739][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.740][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:34.742][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.743][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:34.744][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:34.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:34.749][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:34.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:34.752][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.753][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:34.755][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:34.756][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:34.757][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:34.759][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:34.760][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:34.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:34.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:34.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:34.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:34.869][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:57:34.871][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:57:34.873][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:57:34.875][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:57:34.877][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:57:34.879][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:57:34.881][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:34.882][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:34.884][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:57:34.886][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:57:34.888][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:57:34.890][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:57:34.892][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:34.894][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:34.896][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:57:34.898][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:57:34.900][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:57:34.902][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:57:34.904][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:57:34.906][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:57:34.908][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:57:34.910][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:57:34.912][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:57:34.914][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:57:34.916][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:57:34.918][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:57:34.920][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:57:34.922][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:34.924][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:34.926][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:57:34.928][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:57:34.930][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:57:34.932][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:57:34.934][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:57:34.936][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:57:34.938][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:57:34.940][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:57:34.942][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:57:34.944][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:57:34.946][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:57:34.948][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:57:34.950][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:57:34.952][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:57:34.953][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:57:34.955][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:57:34.957][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:57:34.959][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:57:34.961][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:57:34.963][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:57:34.965][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:57:34.967][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:57:34.969][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:57:34.971][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:57:34.973][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:57:34.975][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:57:34.977][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:57:34.979][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:57:34.981][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:57:34.983][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:57:34.985][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:57:34.987][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:57:34.989][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:57:34.991][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:57:34.993][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:57:34.994][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:57:34.996][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:57:34.998][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:57:35.000][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:57:35.002][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:57:35.004][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:57:35.006][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:57:35.008][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:57:35.010][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:57:35.012][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:57:35.014][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:57:35.016][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:57:35.018][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:57:35.020][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:57:35.021][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:57:35.023][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:57:35.025][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:57:35.027][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:57:35.029][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:57:35.031][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:57:35.033][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:57:35.041][super$initialize] Initialize connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:57:35.042][biodb$getFactory()$createConn] Creating new connector mass.sqlite for database class mass.sqlite , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.INFO [2024-11-05 05:57:35.046][biodb::testThat]
biodb.INFO [2024-11-05 05:57:35.048][biodb::testThat] Running test function test_cache_for_local_db (" We can use the cache system for a local database. ").
biodb.INFO [2024-11-05 05:57:35.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:35.051][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:35.053][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2024-11-05 05:57:35.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:35.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:35.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:35.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:35.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:35.062][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:35.064][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-05 05:57:35.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2024-11-05 05:57:35.069][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/mass.sqlite-a305799d72344462cab2dfa21665a638" for "mass.sqlite-a305799d72344462cab2dfa21665a638".
biodb.TRACE[2024-11-05 05:57:35.071][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-05 05:57:35.072][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-05 05:57:35.074][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2024-11-05 05:57:35.075][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2024-11-05 05:57:35.077][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:35.078][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:35.100][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:35.102][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.108][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:35.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:35.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.117][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:35.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.124][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:35.126][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.131][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:35.133][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.138][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:35.140][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:35.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.152][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2024-11-05 05:57:35.154][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.159][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2024-11-05 05:57:35.161][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:35.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.166][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2024-11-05 05:57:35.168][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.173][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:35.175][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:35.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.180][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2024-11-05 05:57:35.182][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.187][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:35.189][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.194][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:35.196][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:35.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.204][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/mass.sqlite-a305799d72344462cab2dfa21665a638/KNA00776.json"
biodb.DEBUG[2024-11-05 05:57:35.206][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-05 05:57:35.208][self$createEntryFromContent] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:35.212][self$createEntryFromContent] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:35.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:35.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:35.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:35.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:35.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:35.222][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:35.224][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:35.225][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.227][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.228][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2024-11-05 05:57:35.229][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:35.231][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:35.232][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.234][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.235][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.235][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2024-11-05 05:57:35.237][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:35.238][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:35.239][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.241][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.242][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.242][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.242][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2024-11-05 05:57:35.244][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.245][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.247][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.248][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.250][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2024-11-05 05:57:35.251][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:57:35.253][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:57:35.254][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.255][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.257][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.257][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.257][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2024-11-05 05:57:35.258][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:35.260][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:35.261][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.262][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.264][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2024-11-05 05:57:35.266][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:35.267][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:35.269][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.270][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.272][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2024-11-05 05:57:35.273][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:57:35.275][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:57:35.276][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.278][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.279][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2024-11-05 05:57:35.281][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:35.282][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:35.284][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.285][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.287][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2024-11-05 05:57:35.288][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:35.290][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:35.291][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.292][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.294][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2024-11-05 05:57:35.295][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:35.297][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:35.298][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.300][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.301][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2024-11-05 05:57:35.303][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:35.304][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:35.306][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.307][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.309][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2024-11-05 05:57:35.310][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:35.312][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:35.313][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.314][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.316][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2024-11-05 05:57:35.318][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:35.319][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:35.320][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.322][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.323][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2024-11-05 05:57:35.325][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:35.327][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:35.328][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.329][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2024-11-05 05:57:35.332][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:35.334][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:35.335][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.336][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.338][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2024-11-05 05:57:35.340][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:35.341][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:35.343][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.344][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.345][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2024-11-05 05:57:35.347][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:35.348][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:35.350][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.351][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.353][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2024-11-05 05:57:35.354][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:35.356][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:35.357][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.358][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.360][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2024-11-05 05:57:35.362][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:35.363][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:35.364][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.366][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2024-11-05 05:57:35.369][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:35.371][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:35.372][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.373][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.375][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2024-11-05 05:57:35.377][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:35.378][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:35.379][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.381][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.382][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2024-11-05 05:57:35.384][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:35.386][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:35.387][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.388][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2024-11-05 05:57:35.391][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2024-11-05 05:57:35.393][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2024-11-05 05:57:35.394][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.396][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.397][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2024-11-05 05:57:35.399][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.400][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.402][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.403][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.404][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2024-11-05 05:57:35.406][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:35.408][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:35.409][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.410][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.412][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2024-11-05 05:57:35.413][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:35.415][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:35.416][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.418][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2024-11-05 05:57:35.421][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:35.422][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:35.424][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.425][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.426][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2024-11-05 05:57:35.428][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:35.430][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:35.431][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.432][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.434][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2024-11-05 05:57:35.435][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:35.437][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:35.438][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.439][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.441][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2024-11-05 05:57:35.443][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.444][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.445][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.447][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.448][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2024-11-05 05:57:35.450][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:35.452][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:35.453][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.454][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2024-11-05 05:57:35.457][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2024-11-05 05:57:35.459][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2024-11-05 05:57:35.460][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.462][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.463][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2024-11-05 05:57:35.465][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2024-11-05 05:57:35.466][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2024-11-05 05:57:35.478][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.479][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.481][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2024-11-05 05:57:35.482][entry.fields$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:35.484][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:35.485][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.486][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.488][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:57:35.490][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2024-11-05 05:57:35.491][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2024-11-05 05:57:35.492][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.494][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.495][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2024-11-05 05:57:35.497][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2024-11-05 05:57:35.498][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2024-11-05 05:57:35.499][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.501][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.502][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2024-11-05 05:57:35.504][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:35.505][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:35.507][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.508][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.509][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2024-11-05 05:57:35.511][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:35.512][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:35.514][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.515][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.516][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2024-11-05 05:57:35.518][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:35.520][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:35.521][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.522][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.524][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2024-11-05 05:57:35.525][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:35.527][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:35.528][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.529][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.531][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2024-11-05 05:57:35.533][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:35.534][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:35.535][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.537][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.538][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2024-11-05 05:57:35.540][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:35.541][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:35.542][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.544][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.545][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2024-11-05 05:57:35.547][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:35.548][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:35.550][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.551][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.552][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2024-11-05 05:57:35.554][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:35.556][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:35.557][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.558][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.560][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2024-11-05 05:57:35.561][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2024-11-05 05:57:35.563][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-05 05:57:35.564][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.565][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.567][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2024-11-05 05:57:35.569][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.570][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.571][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.573][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.574][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2024-11-05 05:57:35.576][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.577][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.579][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.580][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.581][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2024-11-05 05:57:35.583][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:35.585][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:35.586][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.587][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.589][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2024-11-05 05:57:35.591][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:35.592][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:35.593][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.595][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.596][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2024-11-05 05:57:35.598][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:35.599][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:35.600][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.602][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.603][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2024-11-05 05:57:35.605][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:35.606][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:35.608][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.609][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.610][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2024-11-05 05:57:35.612][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2024-11-05 05:57:35.614][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2024-11-05 05:57:35.615][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.616][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.618][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2024-11-05 05:57:35.620][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2024-11-05 05:57:35.621][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2024-11-05 05:57:35.622][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.624][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.625][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2024-11-05 05:57:35.627][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:35.628][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:35.630][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.631][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.632][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2024-11-05 05:57:35.634][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:35.636][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:35.637][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.638][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.640][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:57:35.642][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2024-11-05 05:57:35.643][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2024-11-05 05:57:35.645][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.646][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.647][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2024-11-05 05:57:35.649][entry.fields$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:35.651][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:35.652][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.653][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.655][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:57:35.657][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:35.658][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:35.659][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.661][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.662][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2024-11-05 05:57:35.664][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:35.666][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:35.667][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.668][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.670][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2024-11-05 05:57:35.672][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:35.673][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:35.674][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.676][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.677][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2024-11-05 05:57:35.679][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:35.680][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:35.682][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.683][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.684][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2024-11-05 05:57:35.686][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:35.688][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:35.689][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.690][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.692][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2024-11-05 05:57:35.694][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2024-11-05 05:57:35.695][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2024-11-05 05:57:35.697][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.698][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.700][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2024-11-05 05:57:35.702][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:35.703][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:35.704][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.706][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.707][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2024-11-05 05:57:35.709][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2024-11-05 05:57:35.710][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2024-11-05 05:57:35.712][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.713][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.715][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2024-11-05 05:57:35.717][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2024-11-05 05:57:35.718][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2024-11-05 05:57:35.719][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.721][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.722][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2024-11-05 05:57:35.724][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:35.726][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:35.727][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.728][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.730][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2024-11-05 05:57:35.732][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:35.733][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:35.735][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.736][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.737][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2024-11-05 05:57:35.739][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:35.741][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:35.742][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.743][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.745][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2024-11-05 05:57:35.747][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:35.748][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:35.750][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.751][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.753][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2024-11-05 05:57:35.755][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:35.756][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:35.757][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.759][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.760][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2024-11-05 05:57:35.762][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2024-11-05 05:57:35.764][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2024-11-05 05:57:35.765][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.766][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.768][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2024-11-05 05:57:35.770][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:35.771][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:35.773][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.774][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.776][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2024-11-05 05:57:35.778][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:35.779][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:35.780][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.782][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.783][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2024-11-05 05:57:35.785][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:35.787][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:35.788][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.789][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.791][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2024-11-05 05:57:35.793][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:35.794][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:35.796][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.797][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.799][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2024-11-05 05:57:35.801][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:35.802][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:35.803][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.805][entry.fields$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.806][entry.fields$get] Asked field names are: products.
biodb.TRACE[2024-11-05 05:57:35.807][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2024-11-05 05:57:35.809][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.810][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:35.812][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2024-11-05 05:57:35.814][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:35.815][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:35.816][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.818][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:35.819][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2024-11-05 05:57:35.821][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:35.823][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:35.824][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.825][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:35.827][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2024-11-05 05:57:35.829][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:35.830][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:35.832][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.833][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:35.834][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2024-11-05 05:57:35.837][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2024-11-05 05:57:35.838][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2024-11-05 05:57:35.839][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.841][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2024-11-05 05:57:35.842][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2024-11-05 05:57:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:35.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.971][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:35.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:35.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:36.031][self$createEntryFromContent] Accession numbers: KNA00776.
biodb.TRACE[2024-11-05 05:57:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:36.076][bdb$getConfig()$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:57:36.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:36.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:36.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:36.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:36.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:36.087][biodb::testThat]
biodb.INFO [2024-11-05 05:57:36.089][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-11-05 05:57:36.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:36.091][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:36.095][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4.1/site-library/biodb/testref/entry-mass.sqlite-KNA00776-content.json".
biodb.DEBUG[2024-11-05 05:57:36.097][biodb$getFactory()$createEntryFromCo ...] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:36.098][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:36.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:36.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:36.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:36.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:36.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:36.295][biodb$getFactory()$createEntryFromCo ...] Accession numbers: KNA00776.
biodb.TRACE[2024-11-05 05:57:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.408][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.518][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.520][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.539][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.566][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.568][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.603][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.604][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.640][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.641][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.676][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.678][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.713][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:36.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.845][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.861][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.862][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.865][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.981][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.982][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.985][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.018][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.019][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.056][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.058][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.093][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.095][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.130][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.132][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:37.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:37.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.162][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:37.163][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:37.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:37.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:37.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.182][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.184][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.193][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.194][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.203][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.204][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.213][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.215][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:37.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:37.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:37.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:37.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:37.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:37.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:37.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.276][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.277][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:37.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:37.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.296][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:37.298][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.307][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.308][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:37.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:37.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.327][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.329][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.338][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.339][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.348][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.350][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:37.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.362][ef$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:37.372][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.373][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-05 05:57:37.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.376][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:37.398][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.399][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-05 05:57:37.401][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.402][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.410][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.411][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-11-05 05:57:37.413][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.414][biodb::testThat]
biodb.WARN [2024-11-05 05:57:37.418][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-05 05:57:37.424][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-05 05:57:37.436][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.437][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-11-05 05:57:37.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.440][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:37.483][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.485][biodb::testThat] Running test function test.getChromCol (" We can retrieve a list of chromatographic columns. ").
biodb.INFO [2024-11-05 05:57:37.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.487][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:37.500][self$getQuery] Running query "select distinct "chrom.col.id", "chrom.col.name" from "entries" where ("accession" in ("KNA00776"));".
biodb.INFO [2024-11-05 05:57:37.512][biodb::testThat]
biodb.INFO [2024-11-05 05:57:37.513][biodb::testThat] Running test function test.searchMsPeaks.rt (" We can search for (M/Z, RT) couples, separately. ").
biodb.INFO [2024-11-05 05:57:37.514][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:37.516][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.633][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:37.634][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:37.635][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:37.636][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:37.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:37.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:37.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.642][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.643][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:37.644][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:37.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:37.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:37.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.654][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.655][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.659][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.660][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:37.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.664][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.666][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.670][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.671][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:37.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.675][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:37.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:37.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:37.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:37.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:37.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:37.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:37.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.697][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.698][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:37.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.702][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:37.704][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:37.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:37.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.713][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:37.714][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:37.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.718][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.720][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.722][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.724][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:37.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:37.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.729][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.731][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.733][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.735][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.736][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.740][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.741][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.745][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:37.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:37.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.750][private$selectFields] Fields [3]: "peak.mz, peak.mztheo, peak.relative.intensity"
biodb.TRACE[2024-11-05 05:57:37.752][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.753][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.757][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.759][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.763][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.764][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.768][private$selectFields] Fields [3]: "peak.mz, peak.mztheo, peak.relative.intensity"
biodb.TRACE[2024-11-05 05:57:37.770][private$organizeFieldsByGroups] Fields [3]: "peak.mz, peak.mztheo, peak.relative.intensity"
biodb.TRACE[2024-11-05 05:57:37.771][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.772][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.776][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.778][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.782][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.783][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.787][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:37.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:37.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.858][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.859][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.863][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.865][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.867][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:37.869][private$matchingMzWithSpectra] M/Z values to process [1]: "282.083871"
biodb.TRACE[2024-11-05 05:57:37.871][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.873][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.877][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.879][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:37.895][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:37.908][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 282.083871) and (`peak_mztheo`.`peak_mztheo` <= 282.083871))));".
biodb.DEBUG[2024-11-05 05:57:37.947][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 282.083871) and (`peak_mztheo`.`peak_mztheo` <= 282.083871))));".
biodb.DEBUG[2024-11-05 05:57:37.950][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:37.996][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: KNA00776.
biodb.TRACE[2024-11-05 05:57:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.008][private$computeRtRange] At step 1, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:38.010][private$computeRtRange] RT tol is 0 (s).
biodb.DEBUG[2024-11-05 05:57:38.011][private$computeRtRange] At step 2, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:38.012][private$computeRtRange] At step 3, RT range is [329.851, 329.851] (s).
biodb.TRACE[2024-11-05 05:57:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.069][self$filterEntriesOnRt] Testing if RT value 329.85108 (s) is in range [329.85108;329.85108] (s) of database entry KNA00776. Used range (after applying tolerances) for RT value is [329.85108, 329.85108] (s).
biodb.TRACE[2024-11-05 05:57:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.087][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00776.
biodb.DEBUG[2024-11-05 05:57:38.089][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:38.090][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:38.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:38.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:38.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:38.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:38.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.111][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:38.112][private$selectFields]
biodb.TRACE[2024-11-05 05:57:38.114][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:38.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:38.116][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:38.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.123][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.125][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.134][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.136][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.140][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.141][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.145][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.147][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.151][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.152][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:38.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:38.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:38.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:38.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.177][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.178][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.180][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.184][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.185][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.195][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.196][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.200][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.202][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:38.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.211][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.213][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.217][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.218][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.222][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.224][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.228][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:38.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:38.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.233][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:38.235][private$organizeFieldsByGroups] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:38.236][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.241][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.243][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.252][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.254][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.257][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.259][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.263][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.264][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.268][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.270][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.274][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:38.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:38.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.279][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:38.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.295][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.297][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.301][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.302][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.321][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.323][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.327][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.328][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.332][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:38.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.337][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.339][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.343][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.344][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.348][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.350][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:38.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:38.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.359][private$organizeFieldsByGroups] Groups [2]: "c("accession", "cas.id", "chebi.id", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "kegg.compound.id", "mass.csv.file.id", "mass.sqlite.id", "monoisotopic.mass", "ms.level", "ms.mode", "name", "smiles"), list(peaks = c("peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.597][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:38.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:38.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.740][private$entriesToListOfDataframes] Entry converted to data frame: [3, 21]: [accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:38.742][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:38.743][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.779][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.780][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.784][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.786][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.788][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.790][private$matchingMzWithSpectra] M/Z values to process [1]: "282.083871"
biodb.TRACE[2024-11-05 05:57:38.792][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.794][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.798][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.799][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:38.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.802][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.894][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 282.083871) and (`peak_mztheo`.`peak_mztheo` <= 282.083871))));".
biodb.DEBUG[2024-11-05 05:57:38.900][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 282.083871) and (`peak_mztheo`.`peak_mztheo` <= 282.083871))));".
biodb.DEBUG[2024-11-05 05:57:38.903][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.916][private$computeRtRange] At step 1, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:38.917][private$computeRtRange] RT tol is 0 (s).
biodb.DEBUG[2024-11-05 05:57:38.918][private$computeRtRange] At step 2, RT range is [329.851, 329.851] (s).
biodb.DEBUG[2024-11-05 05:57:38.920][private$computeRtRange] At step 3, RT range is [329.851, 329.851] (s).
biodb.TRACE[2024-11-05 05:57:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:38.986][self$filterEntriesOnRt] Testing if RT value 329.85108 (s) is in range [329.85108;329.85108] (s) of database entry KNA00776. Used range (after applying tolerances) for RT value is [329.85108, 329.85108] (s).
biodb.TRACE[2024-11-05 05:57:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:38.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:39.030][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00776.
biodb.DEBUG[2024-11-05 05:57:39.031][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:39.033][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:39.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:39.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:39.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:39.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:39.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.057][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:39.059][private$selectFields]
biodb.TRACE[2024-11-05 05:57:39.060][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:39.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:39.063][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:39.065][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.070][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.072][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.082][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.084][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.088][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.089][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.094][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.095][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.098][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.100][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.101][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.105][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:39.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:39.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.117][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.129][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.130][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.135][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.136][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.145][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.146][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.148][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.152][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.154][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.158][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.164][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.166][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.170][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.172][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.174][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.176][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.178][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:39.184][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.188][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:39.189][private$organizeFieldsByGroups] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:39.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.195][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.197][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.198][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.209][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.210][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.215][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.216][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.220][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.222][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.226][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.228][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:39.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:39.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:39.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:39.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.256][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.257][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.261][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.263][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.273][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.275][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.279][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.280][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.291][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.292][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.297][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.298][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.303][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.304][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:39.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:39.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.315][private$organizeFieldsByGroups] Groups [2]: "c("accession", "cas.id", "chebi.id", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "kegg.compound.id", "mass.csv.file.id", "mass.sqlite.id", "monoisotopic.mass", "ms.level", "ms.mode", "name", "smiles"), list(peaks = c("peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.387][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.735][private$entriesToListOfDataframes] Entry converted to data frame: [3, 21]: [accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:39.736][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:39.738][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:39.762][biodb::testThat]
biodb.INFO [2024-11-05 05:57:39.763][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-11-05 05:57:39.765][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:39.766][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:39.769][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-11-05 05:57:39.771][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:39.773][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2024-11-05 05:57:39.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:39.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:39.792][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:39.794][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:39.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.799][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:39.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:39.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.809][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:39.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.816][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:39.818][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.824][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:39.826][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.831][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:39.833][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.839][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:39.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:39.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.847][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2024-11-05 05:57:39.848][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:39.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.854][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2024-11-05 05:57:39.856][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:39.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.862][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2024-11-05 05:57:39.864][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:39.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.869][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:39.871][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.874][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.877][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2024-11-05 05:57:39.879][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:39.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.882][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.885][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:39.887][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.893][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:39.895][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:39.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.898][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:39.901][self$createEntryFromContent] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:39.902][self$createEntryFromContent] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:39.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:39.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:39.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:39.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:39.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:39.963][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:39.965][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-05 05:57:39.975][biodb::testThat]
biodb.INFO [2024-11-05 05:57:39.976][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-11-05 05:57:39.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:39.979][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:39.985][function(conn, opt)] IDS: [2]: "WRONGB, KNA00776"
biodb.DEBUG[2024-11-05 05:57:39.987][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-11-05 05:57:39.988][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:39.990][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2024-11-05 05:57:39.992][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:39.993][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:39.998][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:40.000][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.005][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:40.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.014][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:40.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.018][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.021][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:40.023][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.028][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:40.030][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.035][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:40.037][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:40.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.043][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:40.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.050][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2024-11-05 05:57:40.051][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:40.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.057][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2024-11-05 05:57:40.059][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.065][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2024-11-05 05:57:40.067][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.073][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:40.075][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.080][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2024-11-05 05:57:40.082][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.088][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:40.090][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.095][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:40.097][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.100][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:40.102][self$createEntryFromContent] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:40.104][self$createEntryFromContent] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:40.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:40.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:40.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:40.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:40.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:40.163][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:40.164][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-05 05:57:40.166][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-11-05 05:57:40.193][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.195][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-11-05 05:57:40.196][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.198][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.215][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.216][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-11-05 05:57:40.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.219][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.230][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.231][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-11-05 05:57:40.232][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.234][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.249][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.250][biodb::testThat] Running test function test.db.editing (" We can edit a database. ").
biodb.INFO [2024-11-05 05:57:40.251][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.253][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:40.260][super$initialize] Initialize connector mass.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:40.261][conn$getBiodb()$getFactory()$createConn] Creating new connector mass.sqlite.1 for database class mass.sqlite .
biodb.TRACE[2024-11-05 05:57:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-05 05:57:40.334][conn.2$getBiodb()$getFactory()$delet ...] Connector "mass.sqlite.1" deleted.
biodb.INFO [2024-11-05 05:57:40.339][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.340][biodb::testThat] Running test function test.create.conn.with.same.url (" Creating another connector with the same URL is forbidden. ").
biodb.INFO [2024-11-05 05:57:40.342][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.343][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:40.352][super$initialize] Initialize connector mass.sqlite.1.
biodb.ERROR[2024-11-05 05:57:40.354][conn$getBiodb()$getFactory()$createConn] A connector (mass.sqlite) already exists for database mass.sqlite with the same URL (/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite).
biodb.INFO [2024-11-05 05:57:40.375][biodb::testThat]
biodb.INFO [2024-11-05 05:57:40.377][biodb::testThat] Running test function test.db.writing (" Database writing works. ").
biodb.INFO [2024-11-05 05:57:40.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:40.379][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:40.384][super$initialize] Initialize connector mass.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:40.386][biodb$getFactory()$createConn] Creating new connector mass.sqlite.1 for database class mass.sqlite .
biodb.ERROR[2024-11-05 05:57:40.388][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:40.414][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:40.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:40.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:40.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:40.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:40.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.435][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:40.436][private$selectFields]
biodb.TRACE[2024-11-05 05:57:40.438][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:40.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:40.440][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:40.442][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.447][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.449][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.458][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.459][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.463][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.465][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.469][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.470][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.474][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.476][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.480][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:40.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.484][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:40.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.502][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.504][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.508][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.509][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.520][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:40.521][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.525][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:40.527][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:40.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:40.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.548][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.549][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.553][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.555][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.559][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.561][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:40.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.571][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:40.573][private$organizeFieldsByGroups] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:40.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.580][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.581][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.591][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.593][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.597][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.599][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.603][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.605][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.609][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.610][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.614][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:40.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:40.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:40.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.637][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.638][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.642][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.644][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.654][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:40.655][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:40.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.660][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:40.661][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:40.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.665][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:40.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:40.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.671][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.672][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.676][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.678][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.682][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.684][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:40.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:40.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.693][private$organizeFieldsByGroups] Groups [2]: "c("accession", "cas.id", "chebi.id", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "kegg.compound.id", "mass.csv.file.id", "mass.sqlite.id", "monoisotopic.mass", "ms.level", "ms.mode", "name", "smiles"), list(peaks = c("peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 21]: [accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:41.090][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:41.091][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:41.093][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:41.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:41.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:41.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:41.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:41.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.114][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:41.115][private$selectFields]
biodb.TRACE[2024-11-05 05:57:41.117][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:41.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:41.120][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:41.121][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.127][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.128][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.138][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.140][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.143][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.144][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.146][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.150][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.151][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.155][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.157][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:41.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:41.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:41.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:41.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.184][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.185][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.189][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.191][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.200][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.201][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.203][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.207][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.209][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.213][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.219][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.221][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.224][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.225][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.227][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.231][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.233][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.243][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:41.245][private$organizeFieldsByGroups] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:41.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.252][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.253][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.286][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.288][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.292][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.294][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.298][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.299][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.304][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.305][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:41.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:41.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:41.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.333][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.335][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.339][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.341][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.351][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.352][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.357][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.358][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.363][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.368][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.370][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.374][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.376][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.380][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.382][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.391][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.392][private$organizeFieldsByGroups] Groups [2]: "c("accession", "cas.id", "chebi.id", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "kegg.compound.id", "mass.csv.file.id", "mass.sqlite.id", "monoisotopic.mass", "ms.level", "ms.mode", "name", "smiles"), list(peaks = c("peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:41.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:41.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:41.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:41.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 21]: [accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, ...] [KNA00776, 118-00-3, 16750, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:41.796][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:41.797][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:41.819][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:41.821][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:41.823][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "NA".
biodb.DEBUG[2024-11-05 05:57:41.824][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:41.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:41.828][self$createEntryFromContent] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:41.829][self$createEntryFromContent] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:41.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:41.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:41.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:41.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:41.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:41.883][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-05 05:57:41.884][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.ERROR[2024-11-05 05:57:41.893][private$checkEditingIsAllowed] Editing is not enabled for this database. However this database type is editable. Please call allowEditing() method to enable editing.
biodb.TRACE[2024-11-05 05:57:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.ERROR[2024-11-05 05:57:41.964][conn.2$addNewEntry] Impossible to add entry as a new entry. The passed entry is already part of a connector.
biodb.ERROR[2024-11-05 05:57:41.987][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.DEBUG[2024-11-05 05:57:42.005][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.sqlite.db".
biodb.DEBUG[2024-11-05 05:57:42.017][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:42.019][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.ERROR[2024-11-05 05:57:42.021][private$checkWritingIsAllowed] Writing is not enabled for this database. However this database type is writable. Please call allowWriting() method to enable writing.
biodb.TRACE[2024-11-05 05:57:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:42.058][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:42.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:42.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:42.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:42.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:42.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.080][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:42.081][private$selectFields]
biodb.TRACE[2024-11-05 05:57:42.082][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:42.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:42.085][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:42.086][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.092][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.093][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.103][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.104][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.108][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.110][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.114][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.115][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.119][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.121][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.147][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.149][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.153][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.154][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.164][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.165][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.169][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.171][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.175][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:42.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:42.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.181][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.182][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.186][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:42.188][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.192][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:42.194][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:42.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.198][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.199][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.203][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.208][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.209][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.210][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.220][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.221][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.224][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.226][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.227][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.231][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.233][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.237][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.239][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.241][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.243][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.265][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.266][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.270][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.272][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.282][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.284][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.288][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.290][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.292][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.294][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:42.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:42.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.300][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.301][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:42.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.305][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:42.307][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:42.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.311][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:42.313][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.315][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.328][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.330][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.334][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.335][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.339][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.341][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.346][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.347][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.384][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.386][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.387][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.392][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.393][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.399][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.403][private$selectFields] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:42.404][private$organizeFieldsByGroups] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:42.406][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.412][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.413][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.417][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.419][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.423][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.424][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.428][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.430][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.434][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.456][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.458][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.462][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.464][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.473][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "monoisotopic.mass", "ms.level", "ms.mode", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, ...] [KNA00776, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, 329.85108, s, ...].
biodb.DEBUG[2024-11-05 05:57:42.692][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:42.694][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:43.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:43.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:43.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:43.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:43.183][biodb$getFactory()$deleteConn] Connector "mass.sqlite.1" deleted.
biodb.DEBUG[2024-11-05 05:57:43.188][super$initialize] Initialize connector mass.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:43.190][biodb$getFactory()$createConn] Creating new connector mass.sqlite.1 for database class mass.sqlite , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.sqlite.db".
biodb.TRACE[2024-11-05 05:57:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.209][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:43.210][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:43.212][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.mass.sqlite.db".
biodb.DEBUG[2024-11-05 05:57:43.213][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:43.215][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:43.222][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:43.224][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.227][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.230][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:43.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:43.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.239][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:43.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:43.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.246][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:43.248][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:43.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.254][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:43.255][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:43.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.261][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:43.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:43.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.268][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:43.270][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.276][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:43.277][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.283][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:43.285][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.287][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.290][self$createEntryFromContent] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:43.292][self$createEntryFromContent] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:43.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:43.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:43.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:43.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:43.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:43.302][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:43.304][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:43.305][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.306][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.308][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2024-11-05 05:57:43.309][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:43.311][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2024-11-05 05:57:43.312][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.313][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.315][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.315][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2024-11-05 05:57:43.316][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:43.318][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-05 05:57:43.319][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.321][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.322][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2024-11-05 05:57:43.324][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:43.325][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:43.326][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.328][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.329][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.329][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.329][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.329][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2024-11-05 05:57:43.331][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-05 05:57:43.332][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-05 05:57:43.334][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.335][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.337][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.337][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2024-11-05 05:57:43.338][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:43.340][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:43.341][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.342][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.344][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2024-11-05 05:57:43.345][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:43.347][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2024-11-05 05:57:43.348][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.350][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.352][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2024-11-05 05:57:43.353][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2024-11-05 05:57:43.354][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2024-11-05 05:57:43.356][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.357][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.359][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2024-11-05 05:57:43.360][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:43.362][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:43.363][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.364][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.366][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2024-11-05 05:57:43.368][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:43.369][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-05 05:57:43.370][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.372][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.373][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2024-11-05 05:57:43.375][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:43.376][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2024-11-05 05:57:43.378][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.379][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2024-11-05 05:57:43.382][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:43.384][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2024-11-05 05:57:43.385][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.386][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.388][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2024-11-05 05:57:43.390][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:43.391][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:43.392][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.394][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2024-11-05 05:57:43.397][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:43.398][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2024-11-05 05:57:43.400][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.401][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2024-11-05 05:57:43.404][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:43.405][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2024-11-05 05:57:43.407][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.408][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.410][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2024-11-05 05:57:43.412][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:43.413][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:43.414][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.416][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.417][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2024-11-05 05:57:43.419][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:43.420][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2024-11-05 05:57:43.422][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.423][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2024-11-05 05:57:43.426][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:43.428][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2024-11-05 05:57:43.429][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.431][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.432][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2024-11-05 05:57:43.434][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:43.435][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:43.437][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.438][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.440][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2024-11-05 05:57:43.441][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:43.443][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-05 05:57:43.444][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.446][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.447][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2024-11-05 05:57:43.449][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:43.450][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-05 05:57:43.452][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.453][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.455][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2024-11-05 05:57:43.456][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:43.458][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:43.459][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.461][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.462][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2024-11-05 05:57:43.464][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:43.465][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2024-11-05 05:57:43.467][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.468][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2024-11-05 05:57:43.483][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2024-11-05 05:57:43.485][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2024-11-05 05:57:43.486][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.488][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.490][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2024-11-05 05:57:43.491][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:43.493][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2024-11-05 05:57:43.494][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.496][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.497][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2024-11-05 05:57:43.499][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:43.501][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-05 05:57:43.502][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.504][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2024-11-05 05:57:43.507][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:43.509][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-05 05:57:43.510][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.511][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.513][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2024-11-05 05:57:43.515][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:43.516][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-05 05:57:43.518][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.519][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2024-11-05 05:57:43.522][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:43.524][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-05 05:57:43.525][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.527][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.528][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2024-11-05 05:57:43.530][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:43.532][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-05 05:57:43.533][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.535][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.536][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2024-11-05 05:57:43.538][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:43.539][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2024-11-05 05:57:43.541][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.542][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.544][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2024-11-05 05:57:43.546][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:43.547][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-05 05:57:43.549][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.550][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2024-11-05 05:57:43.554][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2024-11-05 05:57:43.555][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2024-11-05 05:57:43.557][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.558][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.560][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2024-11-05 05:57:43.561][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2024-11-05 05:57:43.563][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2024-11-05 05:57:43.565][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.566][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.568][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2024-11-05 05:57:43.569][entry.fields$get] Asked field names are: description.
biodb.TRACE[2024-11-05 05:57:43.571][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2024-11-05 05:57:43.572][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.574][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.575][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2024-11-05 05:57:43.577][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2024-11-05 05:57:43.579][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2024-11-05 05:57:43.580][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.582][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.583][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2024-11-05 05:57:43.585][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2024-11-05 05:57:43.587][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2024-11-05 05:57:43.588][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.590][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.591][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2024-11-05 05:57:43.593][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:43.595][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2024-11-05 05:57:43.596][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.597][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.599][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2024-11-05 05:57:43.601][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:43.603][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:43.604][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.606][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.607][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2024-11-05 05:57:43.609][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:43.611][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-05 05:57:43.612][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.613][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.615][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2024-11-05 05:57:43.617][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:43.619][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-05 05:57:43.620][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.621][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.623][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2024-11-05 05:57:43.625][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:43.626][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:43.628][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.629][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.631][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2024-11-05 05:57:43.633][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:43.634][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:43.636][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.637][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.639][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2024-11-05 05:57:43.641][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:43.642][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:43.644][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.645][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.647][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2024-11-05 05:57:43.649][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:43.650][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2024-11-05 05:57:43.652][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.653][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.655][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2024-11-05 05:57:43.657][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2024-11-05 05:57:43.658][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-05 05:57:43.660][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.661][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.663][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2024-11-05 05:57:43.665][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:43.667][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:43.668][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.669][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.671][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2024-11-05 05:57:43.673][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:43.675][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:43.676][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.678][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.679][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2024-11-05 05:57:43.681][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:43.683][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-05 05:57:43.684][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.686][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.687][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2024-11-05 05:57:43.689][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:43.691][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:43.693][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.694][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.696][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2024-11-05 05:57:43.698][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:43.700][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:43.701][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.703][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.704][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2024-11-05 05:57:43.706][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:43.708][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:43.710][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.711][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.713][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2024-11-05 05:57:43.715][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2024-11-05 05:57:43.717][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2024-11-05 05:57:43.718][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.720][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.721][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2024-11-05 05:57:43.724][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2024-11-05 05:57:43.725][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2024-11-05 05:57:43.727][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.728][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.730][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2024-11-05 05:57:43.732][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:43.734][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:43.736][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.737][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.739][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2024-11-05 05:57:43.741][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:43.743][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:43.744][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.746][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.747][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2024-11-05 05:57:43.750][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2024-11-05 05:57:43.751][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2024-11-05 05:57:43.753][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.755][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.756][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2024-11-05 05:57:43.759][entry.fields$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:43.760][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:43.762][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.763][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.765][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2024-11-05 05:57:43.767][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:43.769][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2024-11-05 05:57:43.771][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.772][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.774][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2024-11-05 05:57:43.776][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:43.777][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2024-11-05 05:57:43.779][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.780][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.782][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2024-11-05 05:57:43.784][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:43.785][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-05 05:57:43.786][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.788][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.789][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2024-11-05 05:57:43.791][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:43.793][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-05 05:57:43.794][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.795][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.797][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2024-11-05 05:57:43.799][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:43.800][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-05 05:57:43.802][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.803][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.804][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2024-11-05 05:57:43.806][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2024-11-05 05:57:43.808][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2024-11-05 05:57:43.809][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.811][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.812][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2024-11-05 05:57:43.814][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:43.816][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2024-11-05 05:57:43.817][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.818][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.820][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2024-11-05 05:57:43.822][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2024-11-05 05:57:43.823][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2024-11-05 05:57:43.825][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.826][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.827][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2024-11-05 05:57:43.829][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2024-11-05 05:57:43.831][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2024-11-05 05:57:43.832][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.834][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.835][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2024-11-05 05:57:43.837][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:43.839][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:43.840][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.842][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.843][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2024-11-05 05:57:43.845][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2024-11-05 05:57:43.847][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2024-11-05 05:57:43.848][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.849][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.851][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2024-11-05 05:57:43.853][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:43.855][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2024-11-05 05:57:43.856][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.857][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.859][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2024-11-05 05:57:43.861][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:43.863][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:43.864][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.865][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.867][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2024-11-05 05:57:43.869][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:43.871][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:43.882][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.884][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.886][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2024-11-05 05:57:43.888][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2024-11-05 05:57:43.890][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2024-11-05 05:57:43.891][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.892][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.894][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2024-11-05 05:57:43.896][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.898][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:43.899][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.900][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.902][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2024-11-05 05:57:43.904][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:43.905][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:43.907][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.908][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.909][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2024-11-05 05:57:43.911][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.913][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:43.914][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.915][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.917][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2024-11-05 05:57:43.919][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.920][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:43.922][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.923][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.925][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2024-11-05 05:57:43.927][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:43.928][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:43.929][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.931][entry.fields$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.932][entry.fields$get] Asked field names are: products.
biodb.TRACE[2024-11-05 05:57:43.934][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2024-11-05 05:57:43.935][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.936][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:43.938][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2024-11-05 05:57:43.940][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:43.941][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:43.943][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.944][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:43.945][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2024-11-05 05:57:43.947][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:43.949][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-05 05:57:43.950][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.951][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:43.953][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2024-11-05 05:57:43.955][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:43.957][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-05 05:57:43.958][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.959][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:43.961][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2024-11-05 05:57:43.963][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2024-11-05 05:57:43.965][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2024-11-05 05:57:43.966][entry.fields$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.967][entry.fields$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2024-11-05 05:57:43.969][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2024-11-05 05:57:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:44.153][self$createEntryFromContent] Accession numbers: KNA00776.
biodb.INFO [2024-11-05 05:57:44.157][biodb$getFactory()$deleteConn] Connector "mass.sqlite.1" deleted.
biodb.INFO [2024-11-05 05:57:44.162][biodb::testThat]
biodb.INFO [2024-11-05 05:57:44.164][biodb::testThat] Running test function test.db.writing.with.col.add (" We can write entries having new fields. ").
biodb.INFO [2024-11-05 05:57:44.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:44.166][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:44.174][super$initialize] Initialize connector mass.sqlite.1.
biodb.DEBUG[2024-11-05 05:57:44.175][conn$getBiodb()$getFactory()$createConn] Creating new connector mass.sqlite.1 for database class mass.sqlite , with base URL "/home/biocbuild/bbs-3.20-bioc/meat/biodb.Rcheck/tests/testthat/output/test.db.writing.with.col.add.mass.sqlite.db".
biodb.TRACE[2024-11-05 05:57:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.215][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:44.261][conn.2$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:44.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:44.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:44.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:44.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:44.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:44.269][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:44.270][private$selectFields]
biodb.TRACE[2024-11-05 05:57:44.272][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:44.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:44.274][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:44.276][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.281][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.282][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.291][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.293][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.297][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.298][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.302][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.303][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.307][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.308][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.312][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.316][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.333][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.335][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.339][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.340][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.349][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.351][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.354][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.356][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.360][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:44.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.365][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.367][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.371][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.372][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.376][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.377][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.383][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.392][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.393][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.402][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.404][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.408][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.409][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.413][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.415][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.419][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.420][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.424][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.440][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.441][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.445][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.447][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:44.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.450][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.452][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.461][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.463][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.466][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.468][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.472][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:44.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.477][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.478][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.482][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.484][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:44.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.488][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.489][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:44.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.498][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.503][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.505][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.509][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.510][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.514][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.515][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.519][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.521][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.524][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.545][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.547][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.549][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.551][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.552][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.561][private$selectFields] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:44.563][private$organizeFieldsByGroups] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:44.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.569][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.571][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.585][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.587][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.591][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.592][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.596][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.598][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.601][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.622][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.623][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.627][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.628][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.637][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "monoisotopic.mass", "ms.level", "ms.mode", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, ...] [KNA00776, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, 329.85108, s, ...].
biodb.DEBUG[2024-11-05 05:57:44.844][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:44.845][conn.2$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:44.847][fields.def$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:44.848][fields.def$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:44.849][fields.def$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.851][fields.def$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:44.949][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:44.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:44.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:44.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:44.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:44.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.969][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:44.970][private$selectFields]
biodb.TRACE[2024-11-05 05:57:44.971][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:44.973][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:44.974][private$selectFields] Fields [21]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:44.975][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:44.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.979][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.980][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.982][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:44.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.991][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.993][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:44.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:44.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:44.996][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.998][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.002][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.003][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.006][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.007][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.008][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.012][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.033][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.035][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.039][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.040][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.050][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.051][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.055][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.056][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.060][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.064][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.066][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.067][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.071][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.072][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.076][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:45.078][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:45.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.087][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.092][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.094][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.103][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.105][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.108][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.110][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.114][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.115][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.119][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.120][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.146][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.147][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.151][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.152][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.162][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.163][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.167][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.169][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.173][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.177][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.178][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.180][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.184][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.185][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.189][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:45.191][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:45.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.206][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.207][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.211][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.213][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.217][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.218][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.222][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.223][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.227][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.248][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.250][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.263][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.266][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.277][private$selectFields] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:45.278][private$organizeFieldsByGroups] Fields [12]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:45.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.286][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.287][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.291][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.293][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.297][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.298][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.302][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.303][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.329][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.330][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.334][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.335][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.345][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "monoisotopic.mass", "ms.level", "ms.mode", "smiles"), list()"
biodb.TRACE[2024-11-05 05:57:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, ...] [KNA00776, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, 329.85108, s, ...].
biodb.DEBUG[2024-11-05 05:57:45.564][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:45.565][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:45.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:46.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:46.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:46.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:46.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:46.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:46.075][self$getBiodb()$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:46.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:46.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:46.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:46.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:46.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.098][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:46.100][private$selectFields]
biodb.TRACE[2024-11-05 05:57:46.101][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:46.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:46.104][private$selectFields] Fields [22]: "accession, cas.id, chebi.id, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, ..."
biodb.TRACE[2024-11-05 05:57:46.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.109][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.111][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.112][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.122][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.124][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.128][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.129][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.134][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.135][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.138][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.140][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.141][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.168][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.170][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.174][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.176][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.186][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.187][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.192][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.194][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.198][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:46.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.203][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.204][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.205][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.209][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.210][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:46.211][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.215][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.217][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.227][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.228][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.232][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.238][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.239][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.249][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.250][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.254][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.256][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.260][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.261][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.265][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.267][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.271][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.292][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.294][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.298][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.299][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.309][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.310][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.314][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.316][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.320][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:46.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:46.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.325][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.327][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:46.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.331][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:46.332][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.336][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.348][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:46.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.358][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.360][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.369][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.370][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.374][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.376][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.380][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.381][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.385][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.386][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.389][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.411][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.413][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.416][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.418][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.427][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.428][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.432][private$selectFields] Fields [13]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:46.434][private$organizeFieldsByGroups] Fields [13]: "accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, formula, inchi, inchikey, monoisotopic.mass, ms.level, ..."
biodb.TRACE[2024-11-05 05:57:46.435][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.440][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.441][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.445][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.447][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.451][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.452][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.456][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.457][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.482][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.483][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.487][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.489][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.496][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.498][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.499][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.503][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.col.id", "chrom.col.name", "chrom.rt", "chrom.rt.unit", "formula", "inchi", "inchikey", "monoisotopic.mass", "ms.level", "ms.mode", "smiles", "aa.seq"), list()"
biodb.TRACE[2024-11-05 05:57:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 13]: [accession, chrom.col.id, chrom.col.name, chrom.rt, chrom.rt.unit, ...] [anewentry, TOSOH TSKgel ODS-100V 5um Part no. 21456, TOSOH TSKgel ODS-100V 5um Part no. 21456, 329.85108, s, ...].
biodb.DEBUG[2024-11-05 05:57:46.758][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:46.759][self$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-05 05:57:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:46.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.967][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:47.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:47.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:47.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:47.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:47.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:47.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:47.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:47.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:47.240][conn.2$getBiodb()$getFactory()$delet ...] Connector "mass.sqlite.1" deleted.
biodb.INFO [2024-11-05 05:57:47.245][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.247][biodb::testThat] Running test function test.getMzValues (" We can retrieve a list of M/Z values. ").
biodb.INFO [2024-11-05 05:57:47.248][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.250][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:47.259][private$doGetMzValues] Run query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "neg")) limit 10;".
biodb.DEBUG[2024-11-05 05:57:47.266][self$getQuery] Running query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "neg")) limit 10;".
biodb.DEBUG[2024-11-05 05:57:47.286][private$doGetMzValues] Run query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 10;".
biodb.DEBUG[2024-11-05 05:57:47.292][self$getQuery] Running query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 10;".
biodb.INFO [2024-11-05 05:57:47.309][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.310][biodb::testThat] Running test function test.searchForMassSpectra (" We can match M/Z peaks. ").
biodb.INFO [2024-11-05 05:57:47.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.313][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:47.323][private$doGetMzValues] Run query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 2;".
biodb.DEBUG[2024-11-05 05:57:47.329][self$getQuery] Running query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 2;".
biodb.TRACE[2024-11-05 05:57:47.340][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.341][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.346][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.347][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.353][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.354][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.358][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.360][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.363][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.377][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 110.0334) and (`peak_mztheo`.`peak_mztheo` <= 120.0334))));".
biodb.DEBUG[2024-11-05 05:57:47.383][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 110.0334) and (`peak_mztheo`.`peak_mztheo` <= 120.0334))));".
biodb.DEBUG[2024-11-05 05:57:47.385][self$searchForMassSpectra] Found 3 spectra: [3]: "AU116602, AU116606, PR010006"
biodb.DEBUG[2024-11-05 05:57:47.387][conn$searchForMassSpectra] Found 3 spectra: [3]: "AU116602, AU116606, PR010006"
biodb.TRACE[2024-11-05 05:57:47.396][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.398][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.402][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.403][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.408][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.410][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.414][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.416][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.418][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.444][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 111.0365) and (`peak_mztheo`.`peak_mztheo` <= 121.0365))));".
biodb.DEBUG[2024-11-05 05:57:47.451][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 111.0365) and (`peak_mztheo`.`peak_mztheo` <= 121.0365))));".
biodb.DEBUG[2024-11-05 05:57:47.454][self$searchForMassSpectra] Found 3 spectra: [3]: "AU116602, AU116606, PR010006"
biodb.DEBUG[2024-11-05 05:57:47.456][conn$searchForMassSpectra] Found 3 spectra: [3]: "AU116602, AU116606, PR010006"
biodb.INFO [2024-11-05 05:57:47.468][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.469][biodb::testThat] Running test function test.searchForMassSpectra.multiple.mz (" We can search for spectra with multiple M/Z values. ").
biodb.INFO [2024-11-05 05:57:47.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.472][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:47.482][private$doGetMzValues] Run query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 2;".
biodb.DEBUG[2024-11-05 05:57:47.488][self$getQuery] Running query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "pos")) limit 2;".
biodb.TRACE[2024-11-05 05:57:47.498][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.500][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.505][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.506][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.509][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.511][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.513][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.517][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.519][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.521][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.535][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 115.0333) and (`peak_mztheo`.`peak_mztheo` <= 115.0335))));".
biodb.DEBUG[2024-11-05 05:57:47.541][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 115.0333) and (`peak_mztheo`.`peak_mztheo` <= 115.0335))));".
biodb.DEBUG[2024-11-05 05:57:47.544][self$searchForMassSpectra] Found 2 spectra: [2]: "AU116602, AU116606"
biodb.DEBUG[2024-11-05 05:57:47.545][db$searchForMassSpectra] Found 2 spectra: [2]: "AU116602, AU116606"
biodb.TRACE[2024-11-05 05:57:47.554][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.556][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.560][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.561][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.566][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.568][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.572][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.573][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.576][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.589][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 116.0364) and (`peak_mztheo`.`peak_mztheo` <= 116.0366))));".
biodb.DEBUG[2024-11-05 05:57:47.596][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 116.0364) and (`peak_mztheo`.`peak_mztheo` <= 116.0366))));".
biodb.DEBUG[2024-11-05 05:57:47.598][self$searchForMassSpectra] Found 1 spectra: [1]: "AU116606"
biodb.DEBUG[2024-11-05 05:57:47.600][db$searchForMassSpectra] Found 1 spectra: [1]: "AU116606"
biodb.TRACE[2024-11-05 05:57:47.609][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.610][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.615][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.617][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.622][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.623][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.628][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.629][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.633][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.649][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 115.0333) and (`peak_mztheo`.`peak_mztheo` <= 115.0335)) or ((`peak_mztheo`.`peak_mztheo` >= 116.0364) and (`peak_mztheo`.`peak_mztheo` <= 116.0366))));".
biodb.DEBUG[2024-11-05 05:57:47.656][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 115.0333) and (`peak_mztheo`.`peak_mztheo` <= 115.0335)) or ((`peak_mztheo`.`peak_mztheo` >= 116.0364) and (`peak_mztheo`.`peak_mztheo` <= 116.0366))));".
biodb.DEBUG[2024-11-05 05:57:47.658][self$searchForMassSpectra] Found 2 spectra: [2]: "AU116602, AU116606"
biodb.DEBUG[2024-11-05 05:57:47.660][db$searchForMassSpectra] Found 2 spectra: [2]: "AU116602, AU116606"
biodb.INFO [2024-11-05 05:57:47.670][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.671][biodb::testThat] Running test function test.searchForMassSpectra.with.precursor.and.multiple.inputs (" Search by precursor on multiple mzs does not fail. ").
biodb.INFO [2024-11-05 05:57:47.673][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.674][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:47.677][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.679][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.683][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.685][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.690][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.692][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.696][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.698][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.701][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.746][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "msprecmz" on "msprecmz"."accession" = `peak_mztheo`."accession" join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("msprecmz"."msprecmz" = `peak_mztheo`.`peak_mztheo`) and ("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 82.0477843690269) and (`peak_mztheo`.`peak_mztheo` <= 82.048604850973)) or ((`peak_mztheo`.`peak_mztheo` >= 83.013024342803) and (`peak_mztheo`.`peak_mztheo` <= 83.0138544771971))));".
biodb.DEBUG[2024-11-05 05:57:47.756][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "msprecmz" on "msprecmz"."accession" = `peak_mztheo`."accession" join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("msprecmz"."msprecmz" = `peak_mztheo`.`peak_mztheo`) and ("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 82.0477843690269) and (`peak_mztheo`.`peak_mztheo` <= 82.048604850973)) or ((`peak_mztheo`.`peak_mztheo` >= 83.013024342803) and (`peak_mztheo`.`peak_mztheo` <= 83.0138544771971))));".
biodb.DEBUG[2024-11-05 05:57:47.759][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:47.761][db$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:47.769][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.770][biodb::testThat] Running test function test.searchForMassSpectra.with.NA.value (" Search for N/A value returns an empty list. ").
biodb.INFO [2024-11-05 05:57:47.772][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.773][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:47.776][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.778][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.782][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.784][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.787][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.788][db$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:47.809][biodb::testThat]
biodb.INFO [2024-11-05 05:57:47.811][biodb::testThat] Running test function test.collapseResultsDataFrame (" We can collapse the results from searchMsPeaks(). ").
biodb.INFO [2024-11-05 05:57:47.813][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:47.814][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:47.825][private$doGetMzValues] Run query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "neg")) limit 3;".
biodb.DEBUG[2024-11-05 05:57:47.832][self$getQuery] Running query "select distinct "peak_mztheo" from "peak_mztheo" join "entries" on "entries"."accession" = "peak_mztheo"."accession" where (("entries"."ms.mode" = "neg")) limit 3;".
biodb.TRACE[2024-11-05 05:57:47.836][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.837][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.840][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.842][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.844][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.847][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.848][private$matchingMzWithSpectra] M/Z values to process [3]: "141.0167, 161.0238, 162.0274"
biodb.TRACE[2024-11-05 05:57:47.851][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.852][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.855][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.857][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.858][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:47.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.861][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:47.875][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 140.9167) and (`peak_mztheo`.`peak_mztheo` <= 141.1167)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:47.882][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 140.9167) and (`peak_mztheo`.`peak_mztheo` <= 141.1167)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:47.884][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 2 spectra: [2]: "AU200951, AU200952"
biodb.DEBUG[2024-11-05 05:57:47.886][private$loadEntries] Creating entries from ids [2]: "AU200951, AU200952".
biodb.DEBUG[2024-11-05 05:57:47.888][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-05 05:57:47.890][conn$getEntryContent] 2 entry content(s) need to be fetched from Mass spectra SQLite database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2024-11-05 05:57:47.891][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:47.893][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2024-11-05 05:57:47.897][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:47.899][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.902][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.905][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:47.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:47.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.910][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.914][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:47.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:47.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.922][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:47.924][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:47.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.930][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:47.931][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.937][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:47.939][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:47.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.945][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:47.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:47.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.953][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2024-11-05 05:57:47.955][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.961][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2024-11-05 05:57:47.962][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.968][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2024-11-05 05:57:47.970][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.973][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.976][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:47.978][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.984][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2024-11-05 05:57:47.986][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.989][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:47.992][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:47.994][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:47.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:47.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.000][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:48.002][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.010][ef$get] Asked field names are: cas_id.
biodb.TRACE[2024-11-05 05:57:48.012][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:48.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.018][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2024-11-05 05:57:48.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:48.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.028][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2024-11-05 05:57:48.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:48.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.037][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2024-11-05 05:57:48.039][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.046][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2024-11-05 05:57:48.047][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.054][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.056][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.062][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:48.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.071][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2024-11-05 05:57:48.073][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.080][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2024-11-05 05:57:48.081][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.088][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2024-11-05 05:57:48.090][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.097][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2024-11-05 05:57:48.098][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.105][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2024-11-05 05:57:48.107][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.113][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2024-11-05 05:57:48.115][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.121][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2024-11-05 05:57:48.123][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.126][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:48.129][self$createEntryFromContent] Creating Mass spectra SQLite entries from 2 content(s).
biodb.DEBUG[2024-11-05 05:57:48.131][self$createEntryFromContent] Parsing 2 Mass spectra SQLite entries.
biodb.DEBUG[2024-11-05 05:57:48.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:48.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:48.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:48.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:48.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.248][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:48.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:48.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:48.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:48.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:48.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:48.470][self$createEntryFromContent] Accession numbers: AU200951, AU200952.
biodb.DEBUG[2024-11-05 05:57:48.472][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:48.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:48.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:48.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:48.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:48.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.493][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:48.495][private$selectFields]
biodb.TRACE[2024-11-05 05:57:48.496][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:48.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:48.499][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:48.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.506][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.508][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.518][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.519][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.523][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.525][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.529][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.530][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.534][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.536][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.540][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.542][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.546][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.548][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.552][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.554][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.558][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.559][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.575][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.577][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.581][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.583][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.587][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.589][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.593][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.594][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.598][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:48.600][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:48.601][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.607][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.608][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.612][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.618][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.620][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.624][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.625][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.628][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.629][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.631][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.635][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.637][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.641][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.642][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.646][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.648][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.652][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.654][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.658][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.659][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.664][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.665][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.669][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.671][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.675][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.676][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.680][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.682][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.686][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:48.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:48.987][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...].
biodb.DEBUG[2024-11-05 05:57:48.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:48.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:48.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:48.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:48.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:48.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.009][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:49.010][private$selectFields]
biodb.TRACE[2024-11-05 05:57:49.012][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:49.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:49.015][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.016][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.022][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.024][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.028][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.033][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.035][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.039][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.041][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.045][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.046][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.050][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.052][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.056][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.058][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.062][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.064][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.068][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.069][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.074][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.076][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.080][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.082][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.086][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.088][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.092][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.094][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.098][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.100][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.104][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.106][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.113][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.115][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.125][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.127][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.131][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.133][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.137][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.139][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.143][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.144][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.148][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.150][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.154][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.155][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.159][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.161][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.165][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.166][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.171][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.172][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.176][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.178][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.182][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.183][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.188][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.189][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.193][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.368][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.459][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.472][private$entriesToListOfDataframes] Entry converted to data frame: [4, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...].
biodb.DEBUG[2024-11-05 05:57:49.474][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:49.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:49.479][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.481][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.484][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.485][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.487][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.489][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:49.502][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 160.9238) and (`peak_mztheo`.`peak_mztheo` <= 161.1238)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:49.508][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 160.9238) and (`peak_mztheo`.`peak_mztheo` <= 161.1238)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:49.511][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 2 spectra: [2]: "AU200951, AU200952"
biodb.DEBUG[2024-11-05 05:57:49.513][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:49.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:49.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:49.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:49.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:49.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.535][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:49.536][private$selectFields]
biodb.TRACE[2024-11-05 05:57:49.537][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:49.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:49.540][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.542][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.547][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.549][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.559][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.560][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.565][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.566][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.571][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.572][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.577][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.578][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.583][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.584][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.589][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.590][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.595][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.596][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.600][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.602][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.606][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.607][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.612][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.613][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.617][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.618][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.622][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.624][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.628][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.629][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:49.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.636][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.638][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.648][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.649][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.653][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.655][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.659][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.661][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.676][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.678][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.683][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.684][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.689][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.691][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.694][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.695][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.697][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.701][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.703][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.707][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.708][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.713][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.714][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.719][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.720][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.724][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.726][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.729][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.730][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.905][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:49.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.973][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.979][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:49.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.009][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...].
biodb.DEBUG[2024-11-05 05:57:50.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:50.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:50.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:50.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:50.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.030][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:50.031][private$selectFields]
biodb.TRACE[2024-11-05 05:57:50.032][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:50.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:50.046][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.054][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.055][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.059][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.065][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.066][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.070][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.072][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.076][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.077][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.081][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.082][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.086][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.088][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.092][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.093][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.097][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.099][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.103][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.104][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.108][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.110][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.114][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.115][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.119][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.121][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.125][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.126][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.130][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.131][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.138][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.140][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.144][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.149][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.150][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.154][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.156][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.160][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.161][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.165][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.166][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.170][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.172][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.176][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.177][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.181][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.183][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.187][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.188][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.192][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.194][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.198][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.199][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.203][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.205][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.208][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.210][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.214][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.493][private$entriesToListOfDataframes] Entry converted to data frame: [4, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...].
biodb.DEBUG[2024-11-05 05:57:50.494][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:50.496][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-05 05:57:50.501][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.503][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.507][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.509][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.511][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:50.524][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 161.9274) and (`peak_mztheo`.`peak_mztheo` <= 162.1274)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:50.531][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("entries"."ms.mode" = "neg") and (((`peak_mztheo`.`peak_mztheo` >= 161.9274) and (`peak_mztheo`.`peak_mztheo` <= 162.1274)))) limit 2;".
biodb.DEBUG[2024-11-05 05:57:50.533][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 2 spectra: [2]: "AU200951, AU200952"
biodb.DEBUG[2024-11-05 05:57:50.535][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:50.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:50.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:50.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:50.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:50.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.558][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:50.559][private$selectFields]
biodb.TRACE[2024-11-05 05:57:50.561][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:50.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:50.564][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.571][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.572][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.582][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.584][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.588][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.590][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.594][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.595][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.599][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.601][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.605][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.607][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.611][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.612][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.616][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.618][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.622][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.624][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.628][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.629][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.633][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.635][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.639][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.641][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.645][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.646][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.650][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.652][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:50.653][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.659][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.661][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.665][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.670][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.672][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.676][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.678][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.682][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.684][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.688][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.689][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.693][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.695][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.699][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.701][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:50.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.703][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.705][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.706][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.710][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.712][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.716][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.718][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.722][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.723][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.727][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.729][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.733][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.734][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.739][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:50.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:50.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.029][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...] [AU200951, s, C7H5F3O, AU200951, AU200951, ...].
biodb.DEBUG[2024-11-05 05:57:51.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:51.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:51.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:51.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:51.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.050][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:51.051][private$selectFields]
biodb.TRACE[2024-11-05 05:57:51.052][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:51.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:51.055][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:51.056][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:51.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:51.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.062][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.064][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:51.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:51.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.074][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.075][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.079][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.081][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.085][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.087][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.091][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.093][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.097][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.098][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.103][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.104][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.109][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.110][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.125][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.127][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.132][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.133][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.137][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.139][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.143][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.145][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.149][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.150][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.154][private$selectFields] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:51.156][private$organizeFieldsByGroups] Fields [15]: "accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ms.level, ms.mode, msprecannot, msprecmz, peak.attr, ..."
biodb.TRACE[2024-11-05 05:57:51.157][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:51.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:51.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.163][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.164][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:51.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.174][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.175][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.180][ef$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.181][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.185][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.187][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.191][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.193][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.197][ef$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.199][ef$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.203][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.204][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.209][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.210][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.214][ef$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.216][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.220][ef$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.222][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.226][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.228][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.232][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.234][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.238][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.240][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.244][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chrom.rt.unit", "formula", "mass.csv.file.id", "mass.sqlite.id", "ms.level", "ms.mode", "msprecannot", "msprecmz"), list(peaks = c("peak.attr", "peak.formula", "peak.intensity", "peak.mz", "peak.mztheo", "peak.relative.intensity"))"
biodb.TRACE[2024-11-05 05:57:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2024-11-05 05:57:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2024-11-05 05:57:51.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2024-11-05 05:57:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2024-11-05 05:57:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.540][private$entriesToListOfDataframes] Entry converted to data frame: [4, 15]: [accession, chrom.rt.unit, formula, mass.csv.file.id, mass.sqlite.id, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...] [AU200952, s, C7H5F3O, AU200952, AU200952, ...].
biodb.DEBUG[2024-11-05 05:57:51.541][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:51.543][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2024-11-05 05:57:51.574][biodb::testThat]
biodb.INFO [2024-11-05 05:57:51.576][biodb::testThat] Running test function test.msmsSearch.empty.spectrum (" MSMS search works for an empty spectrum. ").
biodb.INFO [2024-11-05 05:57:51.578][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:51.579][biodb::testThat]
biodb.INFO [2024-11-05 05:57:51.609][biodb::testThat]
biodb.INFO [2024-11-05 05:57:51.610][biodb::testThat] Running test function test.msmsSearch.null.spectrum (" MSMS search works for a null spectrum. ").
biodb.INFO [2024-11-05 05:57:51.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:51.614][biodb::testThat]
biodb.INFO [2024-11-05 05:57:51.643][biodb::testThat]
biodb.INFO [2024-11-05 05:57:51.644][biodb::testThat] Running test function test.msmsSearch.no.ids (" No failure occurs when msmsSearch found no IDs. ").
biodb.INFO [2024-11-05 05:57:51.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:51.648][biodb::testThat]
biodb.TRACE[2024-11-05 05:57:51.652][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.653][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.658][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.660][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.666][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.668][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:51.672][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.674][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:51.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:51.677][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:51.699][private$doSearchMzRange] Run query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "msprecmz" on "msprecmz"."accession" = `peak_mztheo`."accession" join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("msprecmz"."msprecmz" = `peak_mztheo`.`peak_mztheo`) and ("entries"."ms.level" = 2) and ("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 1.5) and (`peak_mztheo`.`peak_mztheo` <= 2.5))));".
biodb.DEBUG[2024-11-05 05:57:51.711][self$getQuery] Running query "select distinct `peak_mztheo`."accession" from `peak_mztheo` join "msprecmz" on "msprecmz"."accession" = `peak_mztheo`."accession" join "entries" on "entries"."accession" = `peak_mztheo`."accession" where (("msprecmz"."msprecmz" = `peak_mztheo`.`peak_mztheo`) and ("entries"."ms.level" = 2) and ("entries"."ms.mode" = "pos") and (((`peak_mztheo`.`peak_mztheo` >= 1.5) and (`peak_mztheo`.`peak_mztheo` <= 2.5))));".
biodb.DEBUG[2024-11-05 05:57:51.714][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:51.715][self$searchForMassSpectra] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:51.729][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:57:51.731][self$deleteConn] Connector "mass.sqlite" deleted.
biodb.DEBUG[2024-11-05 05:57:51.733][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:57:51.734][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:51.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:51.736][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-05 05:57:51.744][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-05 05:57:51.747][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-11-05 05:57:51.752][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:51.753][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-05 05:57:51.755][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.760][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-05 05:57:51.762][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.767][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-05 05:57:51.768][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.773][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-05 05:57:51.775][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-05 05:57:51.776][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-05 05:57:51.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.781][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-05 05:57:51.783][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-05 05:57:51.784][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.789][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-05 05:57:51.791][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-05 05:57:51.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.796][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-05 05:57:51.797][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-05 05:57:51.799][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-05 05:57:51.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.804][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-05 05:57:51.806][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.811][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-05 05:57:51.812][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-05 05:57:51.814][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-05 05:57:51.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.819][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:51.820][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-05 05:57:51.822][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-05 05:57:51.823][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-05 05:57:51.824][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-05 05:57:51.826][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-05 05:57:51.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.831][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-05 05:57:51.832][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-05 05:57:51.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.837][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-05 05:57:51.839][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-05 05:57:51.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.844][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-05 05:57:51.846][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-05 05:57:51.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.851][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-05 05:57:51.852][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-05 05:57:51.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.857][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-05 05:57:51.859][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-05 05:57:51.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.876][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-05 05:57:51.877][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-05 05:57:51.883][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-05 05:57:51.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.889][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-05 05:57:51.890][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-05 05:57:51.892][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-05 05:57:51.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:51.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:51.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:51.897][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-05 05:57:51.900][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.902][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-05 05:57:51.903][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.905][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:51.906][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.907][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.909][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.910][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.912][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:51.913][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:51.914][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.916][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-05 05:57:51.917][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:51.919][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.920][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.921][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:51.921][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:51.921][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:51.921][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:51.921][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:51.923][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:51.924][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:51.926][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:51.927][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:51.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:51.930][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:51.931][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.932][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.934][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:51.935][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:51.936][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.938][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.940][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-05 05:57:51.942][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.944][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:51.945][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:51.948][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.949][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.951][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.952][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.954][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:51.955][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:51.956][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.958][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-05 05:57:51.959][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:51.961][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.962][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.964][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-05 05:57:51.964][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:51.964][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-05 05:57:51.964][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-05 05:57:51.964][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-05 05:57:51.965][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:51.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:51.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:51.969][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:51.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:51.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:51.973][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.975][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.976][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:51.977][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:51.979][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.980][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:51.982][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:57:51.984][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.986][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-05 05:57:51.987][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.989][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:51.990][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:51.991][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.993][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:51.994][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:51.995][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-05 05:57:51.997][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:51.998][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:52.000][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-05 05:57:52.001][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:52.002][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.004][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:52.005][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.007][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:52.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:52.009][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:52.011][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:52.012][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:52.013][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:52.015][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:52.016][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.018][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:52.019][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:52.020][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:52.022][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.023][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-05 05:57:52.026][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:52.027][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-05 05:57:52.029][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:52.030][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-05 05:57:52.032][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:52.033][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-05 05:57:52.034][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:52.036][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-05 05:57:52.037][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-05 05:57:52.039][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-05 05:57:52.040][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:52.041][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-05 05:57:52.043][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-05 05:57:52.044][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.046][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-05 05:57:52.047][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.049][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-05 05:57:52.050][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:52.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:52.053][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-05 05:57:52.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-05 05:57:52.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-05 05:57:52.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-05 05:57:52.058][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.059][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-05 05:57:52.060][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-05 05:57:52.062][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-05 05:57:52.063][self$setPropertyValue]
biodb.DEBUG[2024-11-05 05:57:52.065][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-05 05:57:52.066][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-05 05:57:52.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-05 05:57:52.177][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-05 05:57:52.179][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-05 05:57:52.181][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-05 05:57:52.183][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-05 05:57:52.185][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-05 05:57:52.187][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-05 05:57:52.189][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:52.191][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:52.193][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-05 05:57:52.195][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-05 05:57:52.197][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-05 05:57:52.200][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-05 05:57:52.202][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-05 05:57:52.204][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-05 05:57:52.206][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-05 05:57:52.208][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-05 05:57:52.210][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-05 05:57:52.212][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-05 05:57:52.214][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-05 05:57:52.216][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-05 05:57:52.229][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-05 05:57:52.232][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-05 05:57:52.234][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-05 05:57:52.236][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-05 05:57:52.238][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-05 05:57:52.240][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-05 05:57:52.242][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-05 05:57:52.245][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:52.247][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-05 05:57:52.249][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-05 05:57:52.251][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-05 05:57:52.253][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-05 05:57:52.255][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-05 05:57:52.257][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-05 05:57:52.259][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-05 05:57:52.261][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-05 05:57:52.263][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-05 05:57:52.265][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-05 05:57:52.267][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-05 05:57:52.269][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-05 05:57:52.271][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-05 05:57:52.273][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-05 05:57:52.275][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-05 05:57:52.277][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-05 05:57:52.279][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-05 05:57:52.281][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-05 05:57:52.283][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-05 05:57:52.285][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-05 05:57:52.287][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-05 05:57:52.289][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-05 05:57:52.291][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-05 05:57:52.293][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-05 05:57:52.295][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-05 05:57:52.297][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-05 05:57:52.299][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-05 05:57:52.301][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-05 05:57:52.303][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-05 05:57:52.305][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-05 05:57:52.307][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-05 05:57:52.309][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-05 05:57:52.311][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-05 05:57:52.313][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-05 05:57:52.315][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-05 05:57:52.317][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-05 05:57:52.319][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-05 05:57:52.321][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-05 05:57:52.323][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-05 05:57:52.325][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-05 05:57:52.327][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-05 05:57:52.329][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-05 05:57:52.331][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-05 05:57:52.333][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-05 05:57:52.335][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-05 05:57:52.337][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-05 05:57:52.339][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-05 05:57:52.341][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-05 05:57:52.343][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-05 05:57:52.345][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-05 05:57:52.347][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-05 05:57:52.349][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-05 05:57:52.352][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-05 05:57:52.354][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-05 05:57:52.356][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-05 05:57:52.358][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-05 05:57:52.360][initialize] This is biodb version 1.14.0.
biodb.INFO [2024-11-05 05:57:52.362][biodb::testContext]
biodb.INFO [2024-11-05 05:57:52.363][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:52.364][biodb::testContext] Test context - Test LCMS annotation.
biodb.INFO [2024-11-05 05:57:52.366][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-05 05:57:52.367][biodb::testContext]
biodb.INFO [2024-11-05 05:57:52.369][biodb::testThat]
biodb.INFO [2024-11-05 05:57:52.370][biodb::testThat] Running test function test_annotateWithMassCsvFileDb (" We can annotate using mass CSV file db. ").
biodb.INFO [2024-11-05 05:57:52.372][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-05 05:57:52.373][biodb::testThat]
biodb.DEBUG[2024-11-05 05:57:52.380][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2024-11-05 05:57:52.382][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file , with base URL "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.INFO [2024-11-05 05:57:52.384][private$initDb] Loading file database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:57:52.388][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2024-11-05 05:57:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.396][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.398][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2024-11-05 05:57:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.405][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.405][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.407][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.415][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.415][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.415][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.417][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2024-11-05 05:57:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.425][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.425][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.425][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.427][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.434][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.434][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.434][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.434][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.434][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.436][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.443][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.445][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.452][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.454][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.461][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.463][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2024-11-05 05:57:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.471][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.472][self$setField] Set field name to column(s) name.
biodb.TRACE[2024-11-05 05:57:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.480][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.482][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2024-11-05 05:57:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.489][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.491][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2024-11-05 05:57:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.499][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.501][self$setField] Set field cas.id to column(s) cas.id.
biodb.TRACE[2024-11-05 05:57:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.508][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.510][self$setField] Set field chebi.id to column(s) chebi.id.
biodb.TRACE[2024-11-05 05:57:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.517][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.519][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.527][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.530][massbank$addField] Adding new field ms.level with value 1.
biodb.DEBUG[2024-11-05 05:57:52.532][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2024-11-05 05:57:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.539][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.543][massbank$addField] Adding new field chrom.rt.unit with value s.
biodb.DEBUG[2024-11-05 05:57:52.544][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.554][private$matchingMzWithSpectra] M/Z values to process [4]: "282.083871, 283.0623, 346.0546, 821.3964"
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.562][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.564][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.565][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.569][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.570][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.572][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.574][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.577][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.580][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.582][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.584][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2024-11-05 05:57:52.598][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2024-11-05 05:57:52.600][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2024-11-05 05:57:52.602][private$selectByRange] Filtering on field "peak.mztheo", with range: [282.082871, 282.084871].
biodb.DEBUG[2024-11-05 05:57:52.606][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:52.611][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:52.612][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2024-11-05 05:57:52.615][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:52.618][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:57:52.619][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:52.621][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:52.622][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.DEBUG[2024-11-05 05:57:52.630][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level chrom.rt.unit
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 282.083871 100 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 s
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 150.041965 56 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 s
KNA00776 C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N 283.091669 neg 133.015586 5 TOSOH TSKgel ODS-100V 5um Part no. 21456 329.85108 C10H13N5O5 Guanosine InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1 118-00-3 16750 C00387 1 s
biodb.DEBUG[2024-11-05 05:57:52.633][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:52.635][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:52.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:52.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:52.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:52.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:52.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:52.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.950][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:52.951][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:52.953][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:52.965][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:52.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:52.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:52.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:52.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:52.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:52.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.985][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.987][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:52.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.991][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.992][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:52.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:52.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:52.997][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:52.998][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.001][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.002][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.004][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.008][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.010][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.018][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.020][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.024][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.036][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.037][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.039][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.056][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.057][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.062][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.063][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.067][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.069][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.073][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:53.075][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.076][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.081][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.082][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.086][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.088][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.092][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:53.094][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:53.095][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.097][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.101][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.103][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.108][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.110][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.115][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:53.280][self$createEntryFromContent] Accession numbers: KNA00776.
biodb.DEBUG[2024-11-05 05:57:53.281][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:53.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:53.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:53.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:53.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:53.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.302][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:53.304][private$selectFields]
biodb.TRACE[2024-11-05 05:57:53.305][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:53.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:53.308][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:53.309][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.338][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.340][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.343][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.345][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.349][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.350][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.354][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.355][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.359][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.361][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.364][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.370][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.384][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.385][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.387][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.389][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.395][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.401][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.403][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.406][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.408][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.412][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.413][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.417][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.418][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.422][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.424][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.427][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:53.429][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:53.430][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.446][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.447][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.451][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.453][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.456][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.458][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.462][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.463][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.467][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.468][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.478][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.493][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.495][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.509][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.511][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.514][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.516][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.520][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.522][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.526][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.527][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.531][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.532][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.536][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.770][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.901][private$entriesToListOfDataframes] Entry converted to data frame: [3, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:53.902][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:53.904][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:53.907][private$selectByRange] Filtering on field "peak.mztheo", with range: [283.0613, 283.0633].
biodb.DEBUG[2024-11-05 05:57:53.910][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:53.915][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "BS003495"
biodb.DEBUG[2024-11-05 05:57:53.916][private$loadEntries] Creating entries from ids [1]: "BS003495".
biodb.DEBUG[2024-11-05 05:57:53.918][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:53.920][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:57:53.922][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:53.923][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:53.924][private$doGetEntryContentFromDb] Entry id: BS003495
biodb.DEBUG[2024-11-05 05:57:53.932][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level chrom.rt.unit
BS003495 1(=CC(=C2C(=C1)OC(=CC2=O)C3=CC=CC=C3OC)O)O 284.0685 neg 283.0626 100 Waters Acquity BEH C18 1.7um x 2.1 x 150 mm 875.4 C16H12O5 5,7-Dihydroxy-2'-methoxyflavone InChI=1S/C16H12O5/c1-20-13-5-3-2-4-10(13)14-8-12(19)16-11(18)6-9(17)7-15(16)21-14/h2-8,17-18H,1H3 SWYVZKGICYEZDR-UHFFFAOYSA-N 10458-35-2 NA 1 s
BS003495 1(=CC(=C2C(=C1)OC(=CC2=O)C3=CC=CC=C3OC)O)O 284.0685 neg 268.0382 3 Waters Acquity BEH C18 1.7um x 2.1 x 150 mm 875.4 C16H12O5 5,7-Dihydroxy-2'-methoxyflavone InChI=1S/C16H12O5/c1-20-13-5-3-2-4-10(13)14-8-12(19)16-11(18)6-9(17)7-15(16)21-14/h2-8,17-18H,1H3 SWYVZKGICYEZDR-UHFFFAOYSA-N 10458-35-2 NA 1 s
biodb.DEBUG[2024-11-05 05:57:53.935][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:53.936][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:53.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:53.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:53.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:53.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:53.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.238][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:54.239][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:54.241][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:54.242][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:54.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.260][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.261][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.265][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.267][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.271][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.272][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.276][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.278][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.282][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.283][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.287][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.293][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.309][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.311][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.315][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.316][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.320][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.322][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.326][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.328][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.332][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:54.333][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.334][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.338][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.340][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.344][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.345][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.361][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:54.363][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:54.364][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.366][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.370][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.371][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.375][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.377][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.381][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:54.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:54.543][self$createEntryFromContent] Accession numbers: BS003495.
biodb.DEBUG[2024-11-05 05:57:54.544][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:54.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:54.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:54.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:54.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:54.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.565][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:54.567][private$selectFields]
biodb.TRACE[2024-11-05 05:57:54.568][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:54.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:54.571][private$selectFields] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:54.572][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.578][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.579][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.589][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.590][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.594][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.596][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.600][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.602][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.606][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.607][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.611][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.613][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.617][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.639][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.641][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.645][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.646][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.650][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.651][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.656][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.657][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.661][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.662][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.666][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.668][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.672][private$selectFields] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:54.673][private$organizeFieldsByGroups] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:54.675][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.691][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.693][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.707][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.708][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.710][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.714][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.716][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.718][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.720][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.721][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.725][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.727][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.729][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.736][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.745][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.751][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.753][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:54.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.757][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.758][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:54.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.762][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.764][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:54.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.767][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.769][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.771][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.773][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.774][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:54.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.778][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.779][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:54.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:54.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:54.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:54.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.111][private$entriesToListOfDataframes] Entry converted to data frame: [2, 18]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [BS003495, 1(=CC(=C2C(=C1)OC(=CC2=O)C3=CC=CC=C3OC)O)O, 284.0685, neg, Waters Acquity BEH C18 1.7um x 2.1 x 150 mm, ...] [BS003495, 1(=CC(=C2C(=C1)OC(=CC2=O)C3=CC=CC=C3OC)O)O, 284.0685, neg, Waters Acquity BEH C18 1.7um x 2.1 x 150 mm, ...].
biodb.DEBUG[2024-11-05 05:57:55.113][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:55.114][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:55.118][private$selectByRange] Filtering on field "peak.mztheo", with range: [346.0536, 346.0556].
biodb.DEBUG[2024-11-05 05:57:55.122][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:55.126][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00596"
biodb.DEBUG[2024-11-05 05:57:55.128][private$loadEntries] Creating entries from ids [1]: "KNA00596".
biodb.DEBUG[2024-11-05 05:57:55.129][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:55.132][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:57:55.133][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:55.134][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:55.136][private$doGetEntryContentFromDb] Entry id: KNA00596
biodb.DEBUG[2024-11-05 05:57:55.144][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level chrom.rt.unit
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 346.054414 100 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 s
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 306.076742 24 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 s
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 272.088771 7 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 s
KNA00596 Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1 347.06308 neg 134.047448 7 TOSOH TSKgel ODS-100V 5um Part no. 21456 532.0656 C10H14N5O7P AMP InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 61-19-8 16027 C00020 1 s
biodb.DEBUG[2024-11-05 05:57:55.146][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:55.148][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:55.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:55.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:55.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:55.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:55.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:55.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:55.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.461][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:55.462][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:55.463][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:55.464][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:55.466][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:55.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:55.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.482][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.483][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.487][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.489][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.493][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.494][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.498][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.500][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.503][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.505][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.509][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:55.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:55.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:55.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:55.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:55.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:55.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.530][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.532][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.547][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.548][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.552][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.554][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.558][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.559][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.562][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.563][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:55.565][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.566][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.570][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.571][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.575][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.577][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.581][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:55.582][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:55.583][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.585][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.588][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.590][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.594][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.595][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.599][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:55.601][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:55.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:55.770][self$createEntryFromContent] Accession numbers: KNA00596.
biodb.DEBUG[2024-11-05 05:57:55.771][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:55.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:55.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:55.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:55.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:55.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.792][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:55.793][private$selectFields]
biodb.TRACE[2024-11-05 05:57:55.794][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:55.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:55.797][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:55.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:55.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:55.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.814][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.815][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.818][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.819][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.821][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.823][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.824][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.826][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.830][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.831][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.834][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.835][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.837][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:55.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:55.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:55.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:55.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:55.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:55.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.857][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.863][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.865][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.868][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.876][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.880][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.881][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.885][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.887][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:55.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.890][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.892][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.896][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.897][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.901][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.903][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.905][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.907][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:55.908][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:55.910][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:55.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:55.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.914][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:55.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:55.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.926][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.927][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:55.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.931][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.933][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.935][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.937][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.938][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:55.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.943][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.944][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:55.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.949][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.950][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:55.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:55.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:55.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.964][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:55.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:55.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:55.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.975][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.977][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.978][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:55.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:55.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:55.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.994][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.995][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:55.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:55.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:55.999][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.001][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.005][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.006][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.010][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.012][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.016][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.017][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.021][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.265][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.394][private$entriesToListOfDataframes] Entry converted to data frame: [4, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:56.395][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:56.397][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:56.401][private$selectByRange] Filtering on field "peak.mztheo", with range: [821.3954, 821.3974].
biodb.DEBUG[2024-11-05 05:57:56.404][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:56.409][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "TY000021"
biodb.DEBUG[2024-11-05 05:57:56.410][private$loadEntries] Creating entries from ids [1]: "TY000021".
biodb.DEBUG[2024-11-05 05:57:56.412][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-05 05:57:56.413][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "/home/biocbuild/R/R-4.4.1/site-library/biodb/extdata/massbank_extract_lcms_1.tsv".
biodb.DEBUG[2024-11-05 05:57:56.431][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-05 05:57:56.433][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-05 05:57:56.434][private$doGetEntryContentFromDb] Entry id: TY000021
biodb.DEBUG[2024-11-05 05:57:56.443][private$doGetEntryContentFromDb] Content of first entry: accession smiles monoisotopic.mass ms.mode peak.mztheo peak.relative.intensity chrom.col.id chrom.rt formula name inchi inchikey cas.id chebi.id kegg.compound.id ms.level chrom.rt.unit
TY000021 OC(=O)C(C)(C7)CC(C(C)(C7)1)(C(=C6)C(C)(C(C5([H])C6=O)(CCC([H])(C25C)C(C)(C)C(OC(O3)C(OC(O4)C(O)C(C(C4C(O)=O)O)O)C(C(C3C(O)=O)O)O)CC2)C)CC1)[H] 822.40379 neg 821.3965 100 Waters Atlantis T3 (2.1 x 150 mm, 5 um) 737.099 C42H62O16 Glycyrrhizic acid InChI=1S/C42H62O16/c1-37(2)21-8-11-42(7)31(20(43)16-18-19-17-39(4,36(53)54)13-12-38(19,3)14-15-41(18,42)6)40(21,5)10-9-22(37)55-35-30(26(47)25(46)29(57-35)33(51)52)58-34-27(48)23(44)24(45)28(56-34)32(49)50/h16,19,21-31,34-35,44-48H,8-15,17H2,1-7H3,(H,49,50)(H,51,52)(H,53,54)/t19-,21-,22-,23-,24-,25-,26-,27+,28-,29-,30+,31+,34-,35-,38+,39-,40-,41+,42+/m0/s1 LPLVUJXQOOQHMX-QWBHMCJMSA-N 1405-86-3 NA 1 s
biodb.DEBUG[2024-11-05 05:57:56.445][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2024-11-05 05:57:56.447][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2024-11-05 05:57:56.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:56.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:56.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:56.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:56.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-05 05:57:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2024-11-05 05:57:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2024-11-05 05:57:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.734][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:56.735][private$selectFields] Fields type: peak
biodb.TRACE[2024-11-05 05:57:56.736][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:56.737][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2024-11-05 05:57:56.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:56.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:56.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.756][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.757][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.761][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.763][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.767][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.780][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.785][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.787][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.790][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.791][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.793][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:56.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.797][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:56.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:56.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:56.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:56.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:56.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.820][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.822][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.824][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.826][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.827][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:56.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.831][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.833][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.837][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.838][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.842][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:56.844][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.845][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.848][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.849][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.851][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.853][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.854][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.856][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.860][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:56.861][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2024-11-05 05:57:56.863][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.864][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.868][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.870][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.874][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.875][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.879][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2024-11-05 05:57:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2024-11-05 05:57:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-05 05:57:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-05 05:57:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:57.039][self$createEntryFromContent] Accession numbers: TY000021.
biodb.DEBUG[2024-11-05 05:57:57.041][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:57.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:57.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:57.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:57.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:57.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:57.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.063][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:57.064][private$selectFields]
biodb.TRACE[2024-11-05 05:57:57.066][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:57.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:57.069][private$selectFields] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.070][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.076][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.087][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.089][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.093][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.094][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.099][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.100][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.104][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.106][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.110][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.111][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.132][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.149][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.151][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.155][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.156][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.159][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.160][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.162][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.165][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.167][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.171][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.172][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.176][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.178][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.182][private$selectFields] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.183][private$organizeFieldsByGroups] Fields [18]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.189][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.201][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.202][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.206][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.207][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.211][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.213][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.217][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.218][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.222][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.224][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.228][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.249][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.251][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.255][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.257][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.261][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.262][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.266][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.268][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.272][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.274][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.278][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.279][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.283][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.530][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 18]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [TY000021, OC(=O)C(C)(C7)CC(C(C)(C7)1)(C(=C6)C(C)(C(C5([H])C6=O)(CCC([H])(C25C)C(C)(C)C(OC(O3)C(OC(O4)C(O)C(C(C4C(O)=O)O)O)C(C(C3C(O)=O)O)O)CC2)C)CC1)[H], 822.40379, neg, Waters Atlantis T3 (2.1 x 150 mm, 5 um), ...].
biodb.DEBUG[2024-11-05 05:57:57.640][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:57.641][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:57.653][private$matchingMzWithSpectra] M/Z values to process [4]: "282.083871, 283.0623, 346.0546, 821.3964"
biodb.DEBUG[2024-11-05 05:57:57.656][private$selectByRange] Filtering on field "peak.mztheo", with range: [282.082871, 282.084871].
biodb.DEBUG[2024-11-05 05:57:57.660][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:57.665][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:57.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:57.705][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: KNA00776.
biodb.TRACE[2024-11-05 05:57:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:57.718][private$computeRtRange] At step 1, RT range is [334, 334] (s).
biodb.DEBUG[2024-11-05 05:57:57.719][private$computeRtRange] RT tol is 10 (s).
biodb.DEBUG[2024-11-05 05:57:57.721][private$computeRtRange] At step 2, RT range is [324, 344] (s).
biodb.DEBUG[2024-11-05 05:57:57.722][private$computeRtRange] At step 3, RT range is [324, 344] (s).
biodb.TRACE[2024-11-05 05:57:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:57.783][self$filterEntriesOnRt] Testing if RT value 334 (s) is in range [329.85108;329.85108] (s) of database entry KNA00776. Used range (after applying tolerances) for RT value is [324, 344] (s).
biodb.TRACE[2024-11-05 05:57:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:57.802][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00776.
biodb.DEBUG[2024-11-05 05:57:57.803][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00776"
biodb.DEBUG[2024-11-05 05:57:57.805][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:57.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:57.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:57.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:57.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:57.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.826][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:57.828][private$selectFields]
biodb.TRACE[2024-11-05 05:57:57.829][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:57.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:57.832][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.837][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.860][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.862][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.864][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.868][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.870][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.874][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.876][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.880][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.881][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.885][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.887][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:57.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.891][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:57.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:57.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.897][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:57.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:57.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:57.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:57.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:57.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.913][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.915][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:57.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:57.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:57.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:57.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:57.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.928][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.930][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.931][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:57.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.935][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.937][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.939][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.941][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.942][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:57.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.946][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.948][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:57.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.952][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.953][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:57.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.958][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.959][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:57.961][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:57.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:57.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:57.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:57.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:57.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.978][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.979][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:57.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.984][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.985][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:57.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.988][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.989][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.991][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:57.995][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.996][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:57.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:57.999][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.000][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.002][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.006][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.011][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.028][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.029][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.045][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.046][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.050][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.052][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.056][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.057][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.061][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.063][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.065][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.067][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.068][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.071][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.072][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.313][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.319][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.447][private$entriesToListOfDataframes] Entry converted to data frame: [3, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00776, C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N, 283.091669, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:58.449][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:58.450][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:58.453][private$selectByRange] Filtering on field "peak.mztheo", with range: [283.0613, 283.0633].
biodb.DEBUG[2024-11-05 05:57:58.457][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:58.462][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:58.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:58.480][self$filterEntriesOnRt] 0 spectra remaining after chrom col filtering: .
biodb.DEBUG[2024-11-05 05:57:58.481][private$computeRtRange] At step 1, RT range is [872, 872] (s).
biodb.DEBUG[2024-11-05 05:57:58.483][private$computeRtRange] RT tol is 10 (s).
biodb.DEBUG[2024-11-05 05:57:58.484][private$computeRtRange] At step 2, RT range is [862, 882] (s).
biodb.DEBUG[2024-11-05 05:57:58.485][private$computeRtRange] At step 3, RT range is [862, 882] (s).
biodb.DEBUG[2024-11-05 05:57:58.486][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2024-11-05 05:57:58.488][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.DEBUG[2024-11-05 05:57:58.492][private$selectByRange] Filtering on field "peak.mztheo", with range: [346.0536, 346.0556].
biodb.DEBUG[2024-11-05 05:57:58.495][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:58.500][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:58.535][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: KNA00596.
biodb.TRACE[2024-11-05 05:57:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:58.548][private$computeRtRange] At step 1, RT range is [536, 536] (s).
biodb.DEBUG[2024-11-05 05:57:58.560][private$computeRtRange] RT tol is 10 (s).
biodb.DEBUG[2024-11-05 05:57:58.562][private$computeRtRange] At step 2, RT range is [526, 546] (s).
biodb.DEBUG[2024-11-05 05:57:58.564][private$computeRtRange] At step 3, RT range is [526, 546] (s).
biodb.TRACE[2024-11-05 05:57:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:58.622][self$filterEntriesOnRt] Testing if RT value 536 (s) is in range [532.0656;532.0656] (s) of database entry KNA00596. Used range (after applying tolerances) for RT value is [526, 546] (s).
biodb.TRACE[2024-11-05 05:57:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:58.641][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:KNA00596.
biodb.DEBUG[2024-11-05 05:57:58.642][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "KNA00596"
biodb.DEBUG[2024-11-05 05:57:58.644][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-05 05:57:58.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-05 05:57:58.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:58.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:58.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:58.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-05 05:57:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.666][private$selectFields] Fields none
biodb.TRACE[2024-11-05 05:57:58.667][private$selectFields]
biodb.TRACE[2024-11-05 05:57:58.669][private$selectFields] Fields is null: TRUE
biodb.TRACE[2024-11-05 05:57:58.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-05 05:57:58.672][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:58.673][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.690][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.691][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.694][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.695][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.697][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.701][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.702][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.707][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.708][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.712][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.714][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.718][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.722][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.723][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.733][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.740][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.742][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.756][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.758][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.762][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.764][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.768][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.770][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.774][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.776][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.778][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.780][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.781][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.786][private$selectFields] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:58.787][private$organizeFieldsByGroups] Fields [20]: "accession, smiles, monoisotopic.mass, ms.mode, peak.mztheo, peak.relative.intensity, chrom.col.id, chrom.rt, formula, name, ..."
biodb.TRACE[2024-11-05 05:57:58.788][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.805][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.806][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:58.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.809][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.810][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.812][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.814][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.816][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.817][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.820][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.821][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.823][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:58.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.827][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.828][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:58.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:58.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:58.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:58.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.842][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:58.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.847][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:58.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.853][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.854][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.856][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:58.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.858][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:58.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.871][ef$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.872][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:58.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.876][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.878][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:58.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.882][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.883][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.887][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.889][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:58.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.893][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.894][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:58.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.910][private$organizeFieldsByGroups] Groups [2]: "c("accession", "smiles", "monoisotopic.mass", "ms.mode", "chrom.col.id", "chrom.rt", "formula", "name", "inchi", "inchikey", "cas.id", "chebi.id", "kegg.compound.id", "ms.level", "chrom.rt.unit", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2024-11-05 05:57:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-05 05:57:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2024-11-05 05:57:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-05 05:57:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-05 05:57:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-05 05:57:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-05 05:57:58.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-05 05:57:58.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:58.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-05 05:57:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2024-11-05 05:57:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-05 05:57:59.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-05 05:57:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-05 05:57:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-05 05:57:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-05 05:57:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-05 05:57:59.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-05 05:57:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-05 05:57:59.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-05 05:57:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-05 05:57:59.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-05 05:57:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2024-11-05 05:57:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2024-11-05 05:57:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2024-11-05 05:57:59.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2024-11-05 05:57:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.274][private$entriesToListOfDataframes] Entry converted to data frame: [4, 20]: [accession, smiles, monoisotopic.mass, ms.mode, chrom.col.id, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...] [KNA00596, Nc(n3)c(n2)c(nc3)n(c2)[C@H](O1)[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)1, 347.06308, neg, TOSOH TSKgel ODS-100V 5um Part no. 21456, ...].
biodb.DEBUG[2024-11-05 05:57:59.276][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2024-11-05 05:57:59.277][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-05 05:57:59.282][private$selectByRange] Filtering on field "peak.mztheo", with range: [821.3954, 821.3974].
biodb.DEBUG[2024-11-05 05:57:59.285][private$selectByRange] 10 values to filter on field peak.mztheo.
biodb.DEBUG[2024-11-05 05:57:59.290][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2024-11-05 05:57:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-05 05:57:59.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2024-11-05 05:57:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-05 05:57:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-05 05:57:59.310][self$filterEntriesOnRt] 0 spectra remaining after chrom col filtering: .
biodb.DEBUG[2024-11-05 05:57:59.311][private$computeRtRange] At step 1, RT range is [740, 740] (s).
biodb.DEBUG[2024-11-05 05:57:59.313][private$computeRtRange] RT tol is 10 (s).
biodb.DEBUG[2024-11-05 05:57:59.314][private$computeRtRange] At step 2, RT range is [730, 750] (s).
biodb.DEBUG[2024-11-05 05:57:59.315][private$computeRtRange] At step 3, RT range is [730, 750] (s).
biodb.DEBUG[2024-11-05 05:57:59.317][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2024-11-05 05:57:59.318][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.INFO [2024-11-05 05:57:59.330][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2024-11-05 05:57:59.332][self$deleteConn] Connector "mass.csv.file" deleted.
biodb.DEBUG[2024-11-05 05:57:59.333][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-05 05:57:59.335][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-05 05:57:59.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-05 05:57:59.337][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-05 05:57:59.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1514 ]
>
> proc.time()
user system elapsed
114.261 14.008 200.210
biodb.Rcheck/biodb-Ex.timings
| name | user | system | elapsed | |
| BiodbConfig | 0.571 | 0.062 | 1.209 | |
| BiodbConn | 0.324 | 0.002 | 0.626 | |
| BiodbConnBase | 0.144 | 0.004 | 0.284 | |
| BiodbCsvEntry | 0.003 | 0.000 | 0.002 | |
| BiodbDbInfo | 0.131 | 0.005 | 0.153 | |
| BiodbDbsInfo | 0.146 | 0.000 | 0.293 | |
| BiodbEntry | 0.445 | 0.004 | 0.909 | |
| BiodbEntryField | 0.154 | 0.000 | 0.294 | |
| BiodbEntryFields | 0.145 | 0.003 | 0.299 | |
| BiodbFactory | 0.238 | 0.007 | 0.500 | |
| BiodbHtmlEntry | 0 | 0 | 0 | |
| BiodbJsonEntry | 0.000 | 0.000 | 0.001 | |
| BiodbListEntry | 0.000 | 0.000 | 0.001 | |
| BiodbMain | 0.142 | 0.000 | 0.314 | |
| BiodbPersistentCache | 0.581 | 0.044 | 1.089 | |
| BiodbRequest | 0.405 | 0.025 | 8.037 | |
| BiodbRequestScheduler | 0.216 | 0.006 | 4.219 | |
| BiodbSdfEntry | 0 | 0 | 0 | |
| BiodbTestMsgAck | 0.156 | 0.004 | 0.351 | |
| BiodbTxtEntry | 0.001 | 0.000 | 0.001 | |
| BiodbUrl | 0.001 | 0.000 | 0.002 | |
| BiodbXmlEntry | 0 | 0 | 0 | |
| CompCsvFileConn | 0.195 | 0.004 | 0.411 | |
| CompCsvFileEntry | 0.198 | 0.000 | 0.408 | |
| CompSqliteConn | 0.206 | 0.012 | 0.461 | |
| CompSqliteEntry | 0.227 | 0.004 | 0.456 | |
| CsvFileConn | 0.215 | 0.004 | 0.452 | |
| ExtConnClass | 0.155 | 0.016 | 0.420 | |
| ExtCpp | 0.047 | 0.004 | 0.122 | |
| ExtDefinitions | 0.026 | 0.000 | 0.054 | |
| ExtDescriptionFile | 0.013 | 0.000 | 0.025 | |
| ExtEntryClass | 0.017 | 0.000 | 0.044 | |
| ExtFileGenerator | 0.017 | 0.000 | 0.032 | |
| ExtGenerator | 0.273 | 0.008 | 0.591 | |
| ExtGitignore | 0.008 | 0.000 | 0.008 | |
| ExtLicense | 0.036 | 0.000 | 0.068 | |
| ExtMakefile | 0.020 | 0.000 | 0.028 | |
| ExtPackage | 0.275 | 0.008 | 0.545 | |
| ExtPackageFile | 0.009 | 0.000 | 0.028 | |
| ExtRbuildignore | 0.009 | 0.000 | 0.025 | |
| ExtReadme | 0.009 | 0.000 | 0.016 | |
| ExtTests | 0.085 | 0.003 | 0.191 | |
| ExtTravisFile | 0.011 | 0.000 | 0.037 | |
| ExtVignette | 0.011 | 0.000 | 0.025 | |
| MassCsvFileConn | 0.369 | 0.025 | 1.223 | |
| MassCsvFileEntry | 0.309 | 0.020 | 0.685 | |
| MassSqliteConn | 0.199 | 1.972 | 8.615 | |
| MassSqliteEntry | 0.181 | 0.047 | 0.716 | |
| Progress | 0.009 | 0.000 | 0.009 | |
| Range | 0.005 | 0.002 | 0.024 | |
| SqliteConn | 0.190 | 0.354 | 2.170 | |
| TestRefEntries | 0.009 | 0.007 | 0.030 | |
| checkDeprecatedCacheFolders | 0.001 | 0.000 | 0.002 | |
| createBiodbTestInstance | 0.153 | 0.000 | 0.163 | |
| df2str | 0.002 | 0.000 | 0.002 | |
| error | 0.002 | 0.000 | 0.004 | |
| error0 | 0.002 | 0.000 | 0.016 | |
| genNewExtPkg | 0.292 | 0.047 | 0.618 | |
| getConnClassName | 0.000 | 0.000 | 0.002 | |
| getConnTypes | 0.000 | 0.000 | 0.001 | |
| getDefaultCacheDir | 0.000 | 0.016 | 0.025 | |
| getEntryClassName | 0 | 0 | 0 | |
| getEntryTypes | 0 | 0 | 0 | |
| getLicenses | 0 | 0 | 0 | |
| getLogger | 0.015 | 1.245 | 3.697 | |
| getPkgName | 0.00 | 0.00 | 0.01 | |
| getReposName | 0 | 0 | 0 | |
| getTestOutputDir | 0.000 | 0.001 | 0.006 | |
| listTestRefEntries | 0.111 | 0.020 | 0.148 | |
| logDebug | 0.000 | 0.001 | 0.000 | |
| logDebug0 | 0.000 | 0.001 | 0.000 | |
| logInfo | 0.000 | 0.002 | 0.004 | |
| logInfo0 | 0.002 | 0.000 | 0.002 | |
| logTrace | 0.000 | 0.000 | 0.001 | |
| logTrace0 | 0.001 | 0.000 | 0.001 | |
| lst2str | 0 | 0 | 0 | |
| newInst | 0.226 | 0.016 | 0.260 | |
| runGenericTests | 0.163 | 0.000 | 0.164 | |
| testContext | 0.819 | 0.770 | 2.476 | |
| testThat | 0.336 | 0.017 | 0.446 | |
| upgradeExtPkg | 0.307 | 1.478 | 5.874 | |
| warn | 0.000 | 0.002 | 0.002 | |
| warn0 | 0.002 | 0.000 | 0.002 | |