Multiple platform build/check report for BioC 3.20 - CHECK results for biodbChebi on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbChebi

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.12.0.tar.gz

StartedAt: 2025-03-31 23:54:39 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 23:57:24 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 165.2 seconds

RetCode: 0

Status: OK

CheckDir: biodbChebi.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ChebiConn 4.488  1.205   6.483
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-03-31 23:56:08.546][biodb::testContext]
biodb.INFO [2025-03-31 23:56:08.553][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:08.556][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-31 23:56:08.559][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:08.562][biodb::testContext]
biodb.INFO [2025-03-31 23:56:08.575][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:08.579][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:08.595][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:08.598][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:56:08.601][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.610][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:56:08.674][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.683][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:56:08.686][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.694][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:56:08.696][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:56:08.698][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:56:08.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.706][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:56:08.709][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:56:08.711][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.719][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:56:08.722][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:56:08.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.731][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:56:08.734][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:56:08.736][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:56:08.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.744][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:56:08.747][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.755][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:56:08.758][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:56:08.760][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:56:08.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.769][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:08.771][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:56:08.774][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:56:08.776][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:56:08.778][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:56:08.780][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:56:08.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.789][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:56:08.791][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:56:08.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.800][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:56:08.803][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:56:08.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.812][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:56:08.814][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:56:08.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.823][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:56:08.825][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:56:08.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.833][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:56:08.836][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:56:08.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.844][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:08.847][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:56:08.865][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:56:08.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.874][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:56:08.877][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:56:08.879][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:56:08.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:08.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:08.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:08.894][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:56:08.975][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.016][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:56:09.018][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:09.022][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.027][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.030][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.031][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:09.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:09.034][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.035][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:56:09.037][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:09.038][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.039][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.041][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:09.041][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:09.041][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:09.041][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:09.041][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:09.043][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:09.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.050][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:09.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.065][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.067][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.070][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:09.072][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:09.074][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.076][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.078][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:56:09.081][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.083][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:09.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.087][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:09.089][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.096][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.098][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:09.100][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:09.101][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.104][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:56:09.106][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:09.108][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.110][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:09.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:09.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:09.113][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:09.113][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:09.116][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:09.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.123][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:09.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.131][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.133][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.135][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:09.138][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:09.140][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.143][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.146][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:56:09.150][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.152][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:56:09.154][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.157][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:09.159][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.161][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.163][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.166][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.168][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:09.170][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:09.173][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.175][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:56:09.177][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:09.179][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.181][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.184][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.186][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:09.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.192][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:09.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.199][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.201][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.203][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:09.205][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:09.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.209][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.211][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:56:09.215][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.217][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:09.219][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.221][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:09.224][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.226][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.228][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.231][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.233][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:09.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:09.238][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.240][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:56:09.242][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:09.245][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.247][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:09.249][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.251][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:09.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.257][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:09.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:09.261][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:09.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:09.266][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.268][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:09.270][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:09.272][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:09.274][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:09.281][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:09.283][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.476][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:56:09.485][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:56:09.489][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:56:09.492][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:56:09.496][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:09.499][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:56:09.503][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:09.506][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:09.510][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:56:09.513][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:56:09.516][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:09.520][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:56:09.524][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:09.528][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:09.532][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:56:09.535][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:56:09.539][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:56:09.543][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:56:09.546][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:09.550][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:56:09.554][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:56:09.557][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:56:09.560][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:56:09.564][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:56:09.567][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:56:09.571][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:56:09.574][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:56:09.578][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:56:09.581][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:56:09.584][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:56:09.588][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:56:09.591][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:56:09.594][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:56:09.598][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:56:09.601][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:56:09.605][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:56:09.608][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:56:09.611][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:56:09.614][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:56:09.617][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:56:09.621][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:56:09.624][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:56:09.628][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:56:09.632][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:56:09.635][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:56:09.639][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:56:09.643][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:56:09.646][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:56:09.650][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:56:09.653][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:56:09.656][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:56:09.659][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:56:09.662][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:56:09.666][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:56:09.669][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:56:09.673][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:56:09.676][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:56:09.679][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:56:09.682][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:56:09.686][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:56:09.689][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:56:09.693][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:56:09.696][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:56:09.699][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:56:09.702][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:56:09.705][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:56:09.708][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:09.712][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:09.715][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:56:09.718][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:56:09.722][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:56:09.725][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:56:09.728][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:56:09.732][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:56:09.735][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:56:09.738][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:56:09.741][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:56:09.745][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:56:09.748][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:56:09.752][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:56:09.755][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:56:09.759][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:56:09.762][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:56:09.777][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:56:09.781][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:09.788][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:09.790][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.794][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:09.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:09.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:09.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:09.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:09.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:09.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:09.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:10.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:10.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:10.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:10.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:10.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:10.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:10.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:10.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:10.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:10.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:10.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:10.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:10.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:10.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:10.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:10.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:10.067][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:10.093][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:56:10.097][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:10.100][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:56:10.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:10.105][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:10.107][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:10.109][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:10.111][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:10.114][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:56:10.116][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:56:10.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:10.121][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:10.123][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:56:10.126][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:56:10.128][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:56:10.131][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:10.133][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:10.133][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:10.133][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:10.136][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:56:10.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:10.140][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:10.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:10.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:10.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:10.148][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:10.151][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:10.151][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:56:10.153][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:10.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:10.157][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:10.160][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:56:10.160][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:56:10.175][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:10.179][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:10.183][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:56:10.187][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:10.191][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:10.194][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:10.238][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:56:10.241][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:56:10.249][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:56:10.257][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:56:10.265][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:10.268][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:10.273][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:56:10.275][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:56:10.294][biodb::testThat]
biodb.INFO [2025-03-31 23:56:10.297][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-31 23:56:10.300][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:10.303][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:10.311][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-03-31 23:56:10.329][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:10.336][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:10.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:10.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:10.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:10.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:10.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:10.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:10.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:10.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:10.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:10.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:10.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:10.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:10.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:10.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:10.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:10.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:10.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:10.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:10.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.627][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:10.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:10.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:10.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:10.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:10.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:10.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.666][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:10.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:10.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:10.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:10.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:10.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:10.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:10.983][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-03-31 23:56:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:10.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:10.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:11.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:11.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:11.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:11.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:11.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:11.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:11.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:11.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.659][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:11.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:11.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:11.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.855][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:11.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:11.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.924][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:11.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:11.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.992][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:11.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:11.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.254][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:12.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:12.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:12.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:12.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:12.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:12.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.379][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:56:12.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:12.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:12.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:12.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.421][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:12.438][biodb::testThat]
biodb.INFO [2025-03-31 23:56:12.441][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-31 23:56:12.443][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:12.445][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:12.481][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-03-31 23:56:12.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:12.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-03-31 23:56:12.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:12.507][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-03-31 23:56:12.510][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:12.579][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:12.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:12.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:12.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:12.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:12.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:12.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:12.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:12.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:12.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:12.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:12.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:12.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.696][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:12.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:12.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:12.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.750][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.768][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:12.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:12.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:12.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:12.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:12.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:12.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.830][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:12.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:12.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:12.932][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-03-31 23:56:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-31 23:56:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-31 23:56:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-31 23:56:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-31 23:56:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-31 23:56:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-31 23:56:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:12.980][biodb::testThat]
biodb.INFO [2025-03-31 23:56:12.982][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-31 23:56:12.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:12.987][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:12.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:12.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:12.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.000][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:13.002][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-03-31 23:56:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:13.104][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-03-31 23:56:13.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:56:13.163][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:13.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:56:13.206][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:13.208][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:56:13.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:13.278][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:13.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:13.284][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:13.287][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:13.292][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-03-31 23:56:13.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:13.322][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:13.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.335][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:13.344][biodb::testThat]
biodb.INFO [2025-03-31 23:56:13.346][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-31 23:56:13.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:13.351][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:13.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:13.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:13.594][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:13.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:13.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:13.604][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-03-31 23:56:13.641][biodb::testThat]
biodb.INFO [2025-03-31 23:56:13.643][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-31 23:56:13.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:13.648][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:13.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:13.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:56:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:56:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:56:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:13.971][biodb::testThat]
biodb.INFO [2025-03-31 23:56:13.973][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-31 23:56:13.975][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:13.977][biodb::testThat]
biodb.INFO [2025-03-31 23:56:13.994][biodb::testThat]
biodb.INFO [2025-03-31 23:56:13.997][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-31 23:56:13.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:14.002][biodb::testThat]
biodb.INFO [2025-03-31 23:56:14.021][biodb::testThat]
biodb.INFO [2025-03-31 23:56:14.031][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-31 23:56:14.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:14.036][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:14.042][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-03-31 23:56:14.886][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-03-31 23:56:15.947][biodb::testThat]
biodb.INFO [2025-03-31 23:56:15.954][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-31 23:56:15.956][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:15.959][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:16.373][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-03-31 23:56:16.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:16.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:16.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:16.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:16.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:16.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:16.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:16.806][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:16.810][biodb::testThat]
biodb.INFO [2025-03-31 23:56:16.812][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-03-31 23:56:16.814][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:16.816][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:16.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:16.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:16.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:16.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:16.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:17.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:17.060][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:17.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:17.067][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:17.070][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:17.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:17.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:17.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:17.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:17.250][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-03-31 23:56:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:56:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:56:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:17.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:17.364][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:17.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:56:17.371][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:17.374][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:56:17.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:17.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:17.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:17.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:17.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:17.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:17.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:17.465][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-03-31 23:56:17.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:17.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-03-31 23:56:17.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:17.613][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-03-31 23:56:17.615][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:17.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:17.621][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:17.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:17.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:17.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:17.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:17.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:17.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:17.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:17.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:17.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:17.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:17.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:17.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:17.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:17.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:17.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:17.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:17.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:17.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:17.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:17.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.768][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:17.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.778][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:17.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:17.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.807][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:17.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:17.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:17.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:17.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:17.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:17.967][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-03-31 23:56:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:18.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:18.035][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:56:18.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:18.041][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:56:18.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:18.147][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-03-31 23:56:18.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:18.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-03-31 23:56:18.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:18.160][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-03-31 23:56:18.163][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:18.173][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:18.175][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:18.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:18.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.223][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:18.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:18.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:18.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:18.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:18.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:18.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:18.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:18.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.309][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:18.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.347][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:18.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:18.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:18.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:18.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:18.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:18.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:18.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:18.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.503][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-03-31 23:56:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.575][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:18.582][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:18.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:18.588][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:18.591][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:18.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:18.680][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-03-31 23:56:18.682][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:18.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-03-31 23:56:18.688][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:18.691][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-03-31 23:56:18.694][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:18.696][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:18.699][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:18.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:18.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:18.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:18.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:18.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:18.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:18.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:18.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:18.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:18.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.752][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:18.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:18.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:18.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:18.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:18.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:18.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.792][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:18.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:18.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:18.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:18.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:18.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:18.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.846][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:18.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:18.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:18.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:18.959][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-03-31 23:56:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:18.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:19.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:19.035][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-03-31 23:56:19.037][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:19.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-03-31 23:56:19.075][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:19.079][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-03-31 23:56:19.081][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:19.084][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:19.087][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:19.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:19.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.138][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:19.140][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:19.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:19.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:19.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:19.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:19.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.179][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.190][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:19.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:19.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:19.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:19.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:19.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.219][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:19.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:19.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:19.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:19.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:19.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:19.377][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-03-31 23:56:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:19.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:19.458][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-03-31 23:56:19.460][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:19.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-03-31 23:56:19.468][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:19.471][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-03-31 23:56:19.474][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:19.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:19.479][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:19.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:19.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:19.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:19.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:19.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:19.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:19.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:19.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.588][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:19.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:19.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:19.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:19.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:19.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.629][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:19.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:19.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.637][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:19.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.649][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:19.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:19.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:19.753][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-03-31 23:56:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:19.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:19.841][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-03-31 23:56:19.843][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:19.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-03-31 23:56:19.850][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:19.854][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-03-31 23:56:19.856][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:19.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:19.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:19.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:19.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:19.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:19.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:19.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:19.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:19.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:19.894][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:19.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:19.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:19.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:19.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:19.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:19.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:19.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:19.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:19.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:19.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:19.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.009][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.044][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:20.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:20.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:20.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.095][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:20.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:20.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:20.241][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-03-31 23:56:20.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:20.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:20.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:20.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:20.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:20.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:20.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:20.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:20.305][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-03-31 23:56:20.307][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:20.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-03-31 23:56:20.345][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:20.386][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-03-31 23:56:20.389][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:20.392][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:20.395][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:20.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:20.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:20.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:20.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:20.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:20.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:20.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:20.425][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.444][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:20.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:20.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.462][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:20.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:20.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:20.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:20.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:20.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:20.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.528][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.540][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.550][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:20.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:20.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:20.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.608][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:20.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:20.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:20.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:20.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.637][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:20.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:20.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:20.751][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-03-31 23:56:20.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:20.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:20.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:20.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:20.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:20.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:20.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:20.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:20.816][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-03-31 23:56:20.819][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:20.823][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-03-31 23:56:20.827][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:20.830][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-03-31 23:56:20.833][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:20.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:20.838][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:20.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:20.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:20.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:20.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:20.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:20.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:20.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:20.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:20.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.888][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:20.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:20.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:20.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:20.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:20.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:20.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:20.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:20.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.978][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.985][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:20.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:20.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:20.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:21.188][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-03-31 23:56:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:21.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:21.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:21.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:21.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:21.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:21.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:21.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:21.244][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-03-31 23:56:21.246][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:21.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-03-31 23:56:21.252][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:21.256][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-03-31 23:56:21.258][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:21.261][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:21.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:21.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:21.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:21.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:21.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:21.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:21.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:21.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:21.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.322][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:21.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:21.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:21.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:21.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:21.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:21.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.384][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:21.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.411][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:21.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.467][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:21.597][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-03-31 23:56:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:21.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:21.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:21.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:21.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:21.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:21.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:21.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:21.648][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-03-31 23:56:21.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:21.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-03-31 23:56:21.658][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:21.661][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-03-31 23:56:21.663][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:21.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:21.668][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:21.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:21.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:21.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:21.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:21.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:21.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:21.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.724][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:21.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:21.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:21.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:21.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.786][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:21.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:21.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.808][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:21.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.834][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:21.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:21.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:21.995][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-03-31 23:56:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:22.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:22.047][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-03-31 23:56:22.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:22.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-03-31 23:56:22.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:22.058][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-03-31 23:56:22.061][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:22.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:22.066][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:22.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:22.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.114][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:22.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:22.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:22.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:22.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.194][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:22.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:22.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:22.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:22.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:22.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:22.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:22.385][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-03-31 23:56:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:22.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:22.441][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-03-31 23:56:22.443][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:22.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-03-31 23:56:22.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:22.454][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-03-31 23:56:22.457][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:22.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:22.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:22.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:22.496][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:22.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:22.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:22.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:22.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.615][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:22.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.654][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:22.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:22.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:22.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:22.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:22.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.691][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:22.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:22.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:22.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:22.838][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-03-31 23:56:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:22.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:22.893][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-03-31 23:56:22.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:22.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-03-31 23:56:22.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:22.904][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-03-31 23:56:22.907][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:22.909][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:22.912][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:22.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:22.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:22.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:22.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:22.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:22.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:22.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:22.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.958][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.976][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:22.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:22.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:22.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.015][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.034][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.040][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.055][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.059][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.071][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:23.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:23.209][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-03-31 23:56:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:23.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:23.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:23.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:23.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:23.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:23.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:23.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:23.271][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-03-31 23:56:23.273][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:23.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-03-31 23:56:23.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:23.283][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-03-31 23:56:23.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:23.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:23.290][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:23.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:23.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:23.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:23.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:23.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:23.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:23.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:23.320][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.339][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:23.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:23.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.357][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:23.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:23.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:23.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:23.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.400][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.408][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.475][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:23.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:23.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:23.594][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-03-31 23:56:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:23.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:23.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:23.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:23.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:23.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:23.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:23.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:23.649][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-03-31 23:56:23.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:23.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-03-31 23:56:23.708][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:23.711][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-03-31 23:56:23.714][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:23.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:23.726][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:23.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:23.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:23.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:23.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:23.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:23.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:23.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:23.757][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.777][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:23.780][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:23.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:23.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:23.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:23.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:23.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:23.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:23.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.863][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:23.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:23.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.063][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-03-31 23:56:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:24.115][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-03-31 23:56:24.117][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:24.121][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-03-31 23:56:24.124][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:24.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-03-31 23:56:24.130][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:24.132][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:24.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:24.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:24.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.189][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:24.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.208][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:24.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:24.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:24.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:24.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:24.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:24.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.277][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:24.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:24.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:24.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.331][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:24.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:24.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.350][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:24.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:24.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:24.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.469][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-03-31 23:56:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:24.521][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-03-31 23:56:24.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:24.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-03-31 23:56:24.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:24.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-03-31 23:56:24.537][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:24.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:24.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:24.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:24.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:24.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:24.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:24.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:24.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:24.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:24.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:24.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:24.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:24.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:24.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:24.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.685][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:24.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.716][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:24.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:24.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:24.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:24.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:24.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.753][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:24.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:24.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:24.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:24.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.869][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-03-31 23:56:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:24.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:24.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:24.919][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-03-31 23:56:24.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:24.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-03-31 23:56:24.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:24.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-03-31 23:56:24.935][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:24.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:24.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:24.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:24.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:24.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:24.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:24.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:24.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:24.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:24.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:24.990][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:24.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:24.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:24.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.009][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.077][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.139][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:25.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:25.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:25.301][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-03-31 23:56:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:25.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:25.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:25.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:25.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:25.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:25.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:25.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:25.354][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-03-31 23:56:25.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:25.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-03-31 23:56:25.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:25.367][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-03-31 23:56:25.369][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:25.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:25.375][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:25.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:25.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:25.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:25.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:25.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:25.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:25.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:25.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.422][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:25.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:25.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.509][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.516][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.573][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:25.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:25.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:25.705][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-03-31 23:56:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:25.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:25.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:25.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:25.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:25.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:25.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:25.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:25.759][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-03-31 23:56:25.761][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:25.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-03-31 23:56:25.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:25.771][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-03-31 23:56:25.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:25.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:25.778][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:25.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:25.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:25.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:25.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:25.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:25.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:25.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:25.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.825][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:25.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:25.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:25.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:25.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:25.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.912][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.968][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.970][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:25.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:25.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.095][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-03-31 23:56:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:26.159][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-03-31 23:56:26.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:26.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-03-31 23:56:26.168][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:26.172][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-03-31 23:56:26.174][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:26.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:26.180][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:26.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.208][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.227][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:26.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:26.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.246][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:26.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:26.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:26.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:26.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:26.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:26.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:26.306][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:26.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.313][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:26.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:26.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:26.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:26.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:26.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:26.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:26.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:26.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:26.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:26.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:26.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:26.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.501][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-03-31 23:56:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:26.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:26.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:26.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:26.597][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:26.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:26.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:26.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:26.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:26.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:26.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:26.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:26.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:27.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:27.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:27.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-03-31 23:56:27.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:27.899][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-03-31 23:56:27.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:27.913][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:27.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-03-31 23:56:27.920][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:27.923][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-03-31 23:56:27.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:27.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:27.952][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-03-31 23:56:27.955][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:27.958][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-03-31 23:56:27.962][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:27.965][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-03-31 23:56:27.968][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:27.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:27.974][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:27.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:27.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:27.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:27.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:27.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:27.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:28.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:28.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.025][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:28.027][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:28.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:28.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:28.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:28.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:28.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:28.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:28.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:28.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.136][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:28.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:28.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.175][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:28.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:28.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:28.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.194][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:28.197][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:28.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:28.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:28.562][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-03-31 23:56:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:28.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:28.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:28.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:28.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:28.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:28.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:28.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:28.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:28.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:28.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:28.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:28.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:28.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:28.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:28.662][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-03-31 23:56:28.664][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:28.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-03-31 23:56:28.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:28.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-03-31 23:56:28.690][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:28.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:28.695][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:28.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:28.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:28.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:28.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:28.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:28.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:28.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:28.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.732][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.744][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:28.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:28.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:28.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:28.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:28.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:28.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:28.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:28.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:28.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:28.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:28.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:28.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:28.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:28.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:28.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:28.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:28.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:28.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:28.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.044][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-03-31 23:56:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:29.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:29.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:29.149][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:29.152][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:29.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:29.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:29.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:29.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:29.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:29.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:29.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:29.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:30.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:30.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:56:30.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:30.356][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:56:30.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:30.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:30.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:30.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:30.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:30.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:30.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:30.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:30.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:31.578][biodb::testThat]
biodb.INFO [2025-03-31 23:56:31.581][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-31 23:56:31.582][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:31.584][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:56:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:56:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:31.667][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:31.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:31.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:56:31.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:31.684][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:56:31.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:31.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:31.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:56:31.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:31.760][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:56:31.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:31.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:31.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:31.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:31.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:31.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:31.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:31.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:31.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:31.923][private$selectFields]
biodb.TRACE[2025-03-31 23:56:31.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:31.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:31.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:31.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:31.955][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:31.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.028][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:56:32.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.074][private$selectFields]
biodb.TRACE[2025-03-31 23:56:32.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:32.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:32.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.101][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.105][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.117][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:32.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.188][private$selectFields]
biodb.TRACE[2025-03-31 23:56:32.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:32.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:32.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.226][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:56:32.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:32.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:32.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:32.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:32.506][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:32.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:56:32.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:32.547][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:56:32.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:32.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:32.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:56:32.567][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:32.571][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:56:32.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:32.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:32.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:32.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:32.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:32.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:32.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:32.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:32.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:32.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.925][private$selectFields]
biodb.TRACE[2025-03-31 23:56:32.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:32.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:32.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:32.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:32.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:56:32.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:32.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:33.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:33.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:33.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:33.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:33.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.135][private$selectFields]
biodb.TRACE[2025-03-31 23:56:33.137][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:33.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:33.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.190][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.202][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:33.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:33.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:33.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:33.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:33.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:33.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:33.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.282][private$selectFields]
biodb.TRACE[2025-03-31 23:56:33.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:33.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:33.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.311][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:33.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:56:33.429][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:33.432][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:33.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:33.511][biodb::testThat]
biodb.INFO [2025-03-31 23:56:33.514][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-31 23:56:33.516][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:33.523][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:56:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:56:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:33.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:33.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:33.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:33.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:33.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:33.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:33.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:33.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:33.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:33.731][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:56:33.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:33.739][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:56:33.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:33.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:33.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:33.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:33.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:33.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:33.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:33.868][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:33.886][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:33.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:56:33.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:33.904][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:56:33.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:33.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:33.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:33.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:33.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:33.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:33.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:34.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:34.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:34.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:34.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:34.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:34.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:34.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:34.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:34.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:34.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:34.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:34.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:34.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:34.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:34.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:34.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.269][private$selectFields]
biodb.TRACE[2025-03-31 23:56:34.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:34.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:34.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:56:34.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:34.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:34.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:34.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:34.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:34.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:34.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.504][private$selectFields]
biodb.TRACE[2025-03-31 23:56:34.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:34.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:34.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:34.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:34.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:34.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:34.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:34.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:34.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:34.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:34.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.752][private$selectFields]
biodb.TRACE[2025-03-31 23:56:34.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:34.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:34.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:34.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:56:34.892][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:34.905][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:34.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:34.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:35.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:35.072][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:35.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:35.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:56:35.109][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:35.120][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:56:35.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:35.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:35.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:56:35.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:35.160][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:56:35.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:35.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:35.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:35.499][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:35.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.593][private$selectFields]
biodb.TRACE[2025-03-31 23:56:35.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:35.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:35.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:56:35.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:35.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:35.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:35.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:35.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:35.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:35.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.850][private$selectFields]
biodb.TRACE[2025-03-31 23:56:35.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:35.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:35.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:35.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.942][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:35.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:36.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:36.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:36.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:36.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:36.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:36.111][private$selectFields]
biodb.TRACE[2025-03-31 23:56:36.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:36.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:36.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:36.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:36.184][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:36.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.209][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:56:36.298][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:36.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:36.372][biodb::testThat]
biodb.INFO [2025-03-31 23:56:36.375][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-31 23:56:36.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:36.379][biodb::testThat]
biodb.TRACE[2025-03-31 23:56:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:56:36.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:56:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:36.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:36.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:36.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:36.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:36.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:36.570][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:36.589][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:36.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:56:36.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:36.598][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:56:36.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:36.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:36.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:36.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:36.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:36.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:36.728][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:36.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:56:36.743][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:36.746][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:56:36.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:36.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:36.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:36.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:36.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:36.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:36.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:36.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:36.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:36.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:36.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:36.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:36.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:36.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:36.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:37.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:37.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:37.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:37.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.065][private$selectFields]
biodb.TRACE[2025-03-31 23:56:37.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:37.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:37.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:56:37.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:37.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:37.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:37.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:37.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:37.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:37.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.295][private$selectFields]
biodb.TRACE[2025-03-31 23:56:37.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:37.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:37.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.380][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:37.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:37.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:37.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:37.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:37.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:37.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:37.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.545][private$selectFields]
biodb.TRACE[2025-03-31 23:56:37.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:37.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:37.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.578][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:37.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:56:37.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:37.696][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:37.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:37.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:37.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:37.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:37.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:37.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:37.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:37.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:37.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:37.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:56:37.957][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:37.960][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:56:37.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:37.995][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:37.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:56:38.001][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:38.013][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:56:38.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:38.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:38.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:38.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:38.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:56:38.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.430][private$selectFields]
biodb.TRACE[2025-03-31 23:56:38.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:38.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:38.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.473][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:56:38.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.667][private$selectFields]
biodb.TRACE[2025-03-31 23:56:38.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:38.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:38.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:56:38.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:38.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:38.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:38.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:38.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:38.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:38.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.895][private$selectFields]
biodb.TRACE[2025-03-31 23:56:38.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:56:38.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:56:38.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.952][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:56:38.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:38.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:38.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:56:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:39.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:56:39.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:56:39.074][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:56:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:56:39.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:39.192][biodb::testThat]
biodb.INFO [2025-03-31 23:56:39.195][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-31 23:56:39.197][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:39.199][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:39.212][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-31 23:56:39.215][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:39.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-31 23:56:39.230][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-31 23:56:39.233][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-31 23:56:39.236][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:39.239][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:39.250][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-31 23:56:39.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-31 23:56:39.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:39.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:39.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:39.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:39.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:39.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:39.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:39.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2025-03-31 23:56:39.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:39.323][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:39.326][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2025-03-31 23:56:39.796][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2025-03-31 23:56:40.282][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:40.313][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2025-03-31 23:56:40.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2025-03-31 23:56:40.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2025-03-31 23:56:40.379][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-31 23:56:40.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:40.385][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:40.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:40.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:40.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:40.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:40.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:40.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:40.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:40.415][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:40.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.444][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:40.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:40.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:40.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:40.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:40.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.485][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:40.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:40.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:40.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:40.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.573][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:40.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:40.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:40.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:40.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:40.772][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-03-31 23:56:40.775][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-31 23:56:40.845][biodb::testThat]
biodb.INFO [2025-03-31 23:56:40.847][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-31 23:56:40.850][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:40.852][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:40.933][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-03-31 23:56:40.936][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-03-31 23:56:40.938][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-31 23:56:40.942][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-03-31 23:56:40.945][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-03-31 23:56:40.949][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-03-31 23:56:40.951][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:40.953][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:40.956][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-31 23:56:40.958][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-31 23:56:41.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:41.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:41.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:41.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:41.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:41.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:41.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:41.101][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2025-03-31 23:56:41.179][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:41.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:41.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2025-03-31 23:56:41.752][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2025-03-31 23:56:42.153][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:42.158][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2025-03-31 23:56:42.172][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.TRACE[2025-03-31 23:56:42.178][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml"
biodb.DEBUG[2025-03-31 23:56:42.181][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-31 23:56:42.184][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-03-31 23:56:42.186][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:42.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:42.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:42.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:42.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:42.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:42.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:42.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:42.216][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:42.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:42.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:42.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:42.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:42.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:42.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.319][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:42.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.338][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:42.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.352][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:42.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:42.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:42.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:42.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:42.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:42.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:42.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:42.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:42.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:42.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:42.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:42.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:42.632][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:42.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:42.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.722][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:42.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:42.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:42.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:42.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.855][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.891][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:42.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:42.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:42.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:42.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.016][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:43.019][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:43.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:43.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:43.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:43.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:43.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:43.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:43.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:43.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:43.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:43.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:43.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.352][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:43.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.400][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:43.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:43.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:43.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:43.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:43.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:43.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:43.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:43.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.554][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:43.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:56:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:56:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:43.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:43.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:43.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:43.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:43.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:56:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:56:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:43.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:43.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:56:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:56:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:56:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:44.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:56:44.040][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-03-31 23:56:44.042][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-31 23:56:44.044][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-03-31 23:56:44.102][biodb::testThat]
biodb.INFO [2025-03-31 23:56:44.104][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-31 23:56:44.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:44.125][biodb::testThat]
biodb.INFO [2025-03-31 23:56:44.243][biodb::testThat]
biodb.INFO [2025-03-31 23:56:44.245][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-31 23:56:44.247][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:44.256][biodb::testThat]
biodb.INFO [2025-03-31 23:56:44.290][biodb::testThat]
biodb.INFO [2025-03-31 23:56:44.294][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-31 23:56:44.297][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:44.299][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:44.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:44.330][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:44.333][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:44.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2025-03-31 23:56:44.805][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2025-03-31 23:56:45.295][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:45.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2025-03-31 23:56:45.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2025-03-31 23:56:45.347][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:56:45.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:56:45.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:45.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:45.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:45.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:56:45.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:45.368][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:56:45.372][biodb::testThat]
biodb.INFO [2025-03-31 23:56:45.374][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2025-03-31 23:56:45.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:45.380][biodb::testThat]
biodb.ERROR[2025-03-31 23:56:45.420][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-03-31 23:56:45.464][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-03-31 23:56:45.535][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:56:45.538][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:56:45.541][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:56:45.543][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:56:45.553][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:45.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:45.558][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:45.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:45.573][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:56:45.616][biodb::testContext]
biodb.INFO [2025-03-31 23:56:45.627][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:45.630][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-03-31 23:56:45.632][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:45.634][biodb::testContext]
biodb.INFO [2025-03-31 23:56:45.645][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:45.649][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:45.667][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:45.669][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:56:45.672][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.689][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:56:45.691][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.707][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:56:45.719][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.727][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:56:45.737][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:56:45.740][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:56:45.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.757][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:56:45.760][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:56:45.762][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.779][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:56:45.782][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:56:45.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.800][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:56:45.803][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:56:45.815][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:56:45.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.830][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:56:45.832][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.851][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:56:45.853][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:56:45.855][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:56:45.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.874][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:45.876][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:56:45.879][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:56:45.891][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:56:45.893][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:56:45.896][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:56:45.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.913][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:56:45.915][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:56:45.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.931][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:56:45.934][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:56:45.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.952][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:56:45.962][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:56:45.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:45.971][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:56:45.983][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:56:45.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:45.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:45.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.002][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:56:46.005][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:56:46.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.023][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:46.026][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:56:46.048][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:56:46.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.056][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:56:46.059][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:56:46.061][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:56:46.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.077][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:56:46.081][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.091][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:56:46.094][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.096][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:46.098][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.110][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.113][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.115][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.117][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:46.128][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:46.131][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.135][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:56:46.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:46.150][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.153][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.156][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:46.156][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:46.156][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:46.156][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:46.156][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:46.158][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:46.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.171][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:46.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.188][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.190][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.192][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:46.194][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:46.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.209][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.212][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:56:46.224][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.227][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:46.229][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.232][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:46.243][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.248][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.250][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.262][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:46.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:46.267][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.269][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:56:46.281][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:46.283][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.286][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.288][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:46.288][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:46.288][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:46.288][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:46.288][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:46.301][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:46.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.308][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:46.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.324][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.327][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.329][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:46.340][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:46.343][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.345][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.348][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:56:46.363][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.365][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:56:46.368][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.370][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:46.382][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.384][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.389][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.398][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:46.400][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:46.403][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.405][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:56:46.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:46.420][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.423][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.451][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.454][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:46.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.458][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.474][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:46.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.491][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.494][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:46.496][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:46.498][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.500][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.523][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:56:46.527][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.530][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:46.542][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.545][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:46.547][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.549][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.560][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.562][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.565][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:46.567][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:46.579][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.582][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:56:46.584][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:46.586][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.641][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:46.644][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.648][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:46.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.659][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.662][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:46.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:46.667][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:46.678][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:46.681][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.683][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:46.688][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:46.690][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:46.692][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:46.697][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:46.701][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:46.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:46.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:46.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:46.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:46.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.129][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:56:47.132][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:56:47.140][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:56:47.144][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:56:47.148][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:47.160][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:56:47.163][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:47.167][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:47.178][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:56:47.181][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:56:47.185][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:47.199][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:56:47.202][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:47.218][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:47.222][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:56:47.225][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:56:47.255][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:56:47.271][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:56:47.275][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:47.279][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:56:47.282][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:56:47.286][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:56:47.289][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:56:47.308][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:56:47.314][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:56:47.317][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:56:47.320][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:56:47.333][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:56:47.336][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:56:47.340][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:56:47.353][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:56:47.356][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:56:47.365][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:56:47.369][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:56:47.372][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:56:47.376][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:56:47.379][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:56:47.397][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:56:47.410][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:56:47.413][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:56:47.416][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:56:47.429][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:56:47.432][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:56:47.436][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:56:47.448][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:56:47.452][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:56:47.455][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:56:47.469][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:56:47.473][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:56:47.489][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:56:47.496][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:56:47.499][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:56:47.505][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:56:47.508][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:56:47.524][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:56:47.527][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:56:47.530][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:56:47.544][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:56:47.547][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:56:47.551][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:56:47.563][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:56:47.566][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:56:47.570][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:56:47.584][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:56:47.587][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:56:47.599][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:56:47.603][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:47.606][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:47.620][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:56:47.624][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:56:47.629][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:56:47.643][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:56:47.647][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:56:47.650][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:56:47.661][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:56:47.664][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:56:47.677][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:56:47.681][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:56:47.685][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:56:47.699][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:56:47.702][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:56:47.706][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:56:47.720][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:56:47.724][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:56:47.728][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:47.740][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:47.742][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.748][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:47.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:47.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:47.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:47.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:47.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:47.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:47.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:48.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.314][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:48.318][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:56:48.330][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:48.332][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:56:48.334][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:48.336][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:48.348][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:48.350][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:48.352][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:48.355][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:56:48.368][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:56:48.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:48.372][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:48.375][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:56:48.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:56:48.388][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:56:48.390][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:48.393][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:48.393][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:48.393][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:48.404][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:56:48.407][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:48.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:48.411][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:48.413][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:48.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:48.427][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:48.429][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:48.429][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:56:48.432][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:48.433][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:48.443][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:48.445][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:56:48.445][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:56:48.448][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:48.462][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:48.466][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:56:48.469][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:48.482][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:48.486][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:48.503][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:56:48.505][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:56:48.508][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:56:48.519][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:56:48.522][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:48.524][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:48.527][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:56:48.538][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:56:48.541][biodb::testThat]
biodb.INFO [2025-03-31 23:56:48.543][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2025-03-31 23:56:48.545][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:48.557][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:48.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:56:48.581][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:48.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:56:48.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:48.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:56:48.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:48.633][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:48.636][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:56:48.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:48.651][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:56:48.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:48.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:48.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:48.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:56:48.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:48.737][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:56:48.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:48.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:48.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:48.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:48.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:48.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:48.929][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:48.937][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:48.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:56:48.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:48.955][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:56:48.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:48.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:48.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:48.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:49.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:49.044][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:49.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:56:49.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:49.056][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:56:49.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:49.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:49.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:49.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:49.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:49.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:49.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:49.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:49.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:49.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:49.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:56:49.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:49.208][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:56:49.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:49.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:49.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:49.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:49.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:49.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:49.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:56:49.300][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:49.304][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:56:49.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:49.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:49.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:49.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:49.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:49.389][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:49.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-03-31 23:56:49.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:49.411][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-03-31 23:56:49.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:49.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:49.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:49.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:49.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:49.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:49.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:56:49.491][biodb::testThat]
biodb.INFO [2025-03-31 23:56:49.493][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2025-03-31 23:56:49.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:49.498][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:49.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:49.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:49.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:49.548][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-31 23:56:49.966][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-31 23:56:50.362][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:50.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2025-03-31 23:56:50.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2025-03-31 23:56:50.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:50.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:50.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:50.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:50.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:50.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:50.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:50.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:50.422][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:50.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:50.429][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-31 23:56:50.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-31 23:56:51.224][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:51.228][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2025-03-31 23:56:51.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2025-03-31 23:56:51.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:51.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:51.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:51.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:51.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:51.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:56:51.276][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:56:51.279][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:56:51.282][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:56:51.284][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:56:51.295][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:51.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:51.312][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:51.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:51.316][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:56:51.325][biodb::testContext]
biodb.INFO [2025-03-31 23:56:51.329][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:51.331][biodb::testContext] Test context - Test web services
biodb.INFO [2025-03-31 23:56:51.333][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:51.335][biodb::testContext]
biodb.INFO [2025-03-31 23:56:51.345][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:51.349][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:51.359][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:51.361][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:56:51.364][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.372][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:56:51.375][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.384][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:56:51.386][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.395][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:56:51.398][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:56:51.400][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:56:51.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.409][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:56:51.412][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:56:51.423][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.432][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:56:51.443][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:56:51.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.460][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:56:51.463][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:56:51.465][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:56:51.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.487][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:56:51.490][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.522][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:56:51.524][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:56:51.537][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:56:51.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.546][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:51.561][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:56:51.564][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:56:51.566][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:56:51.568][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:56:51.581][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:56:51.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.591][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:56:51.605][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:56:51.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.614][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:56:51.644][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:56:51.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.662][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:56:51.664][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:56:51.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.682][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:56:51.685][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:56:51.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.700][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:56:51.703][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:56:51.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.721][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:51.724][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:56:51.746][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:56:51.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.754][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:56:51.769][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:56:51.771][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:56:51.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:51.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:51.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:51.786][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:56:51.790][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:51.792][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:56:51.805][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.807][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:51.810][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.812][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:51.823][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:51.826][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:51.828][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:51.830][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:51.843][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.846][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:56:51.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:51.851][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:51.863][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.866][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:51.866][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:51.866][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:51.866][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:51.866][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:51.868][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:51.870][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:51.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:51.885][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:51.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:51.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:51.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:51.903][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:51.905][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:51.908][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:51.910][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:51.922][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:51.926][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:56:51.930][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:51.942][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:51.945][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.947][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:51.949][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.951][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:51.960][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:51.962][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:51.964][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:51.967][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:51.979][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:51.982][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:56:51.984][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:51.987][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:51.999][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.021][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:52.021][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:52.021][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:52.021][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:52.021][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:52.023][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:52.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.030][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:52.032][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.043][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.046][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.048][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.050][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:52.057][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:52.060][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.062][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.065][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:56:52.080][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.082][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:56:52.084][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:52.094][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.096][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.099][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.102][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.107][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:52.109][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:52.112][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.114][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:56:52.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:52.134][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.137][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.139][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.149][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:52.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.154][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.156][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:52.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.168][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.171][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.173][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.176][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:52.188][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:52.191][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.193][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.196][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:56:52.208][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.211][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:52.213][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.224][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:52.226][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.229][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.231][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.242][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.244][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:52.247][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:52.249][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.261][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:56:52.264][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:52.266][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:52.280][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.283][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:52.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:52.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:52.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:52.306][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:52.315][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.317][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:52.319][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:52.322][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:52.332][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:52.336][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:52.338][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:52.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:52.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:52.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:52.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:52.756][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:56:52.760][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:56:52.763][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:56:52.774][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:56:52.786][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:52.790][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:56:52.794][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:52.808][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:52.812][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:56:52.815][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:56:52.829][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:52.833][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:56:52.844][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:52.848][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:52.852][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:56:52.864][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:56:52.868][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:56:52.871][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:56:52.902][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:52.914][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:56:52.918][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:56:52.921][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:56:52.930][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:56:52.934][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:56:52.937][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:56:52.940][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:56:52.953][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:56:52.965][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:56:52.969][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:56:52.972][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:56:52.986][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:56:52.989][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:56:52.998][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:56:53.001][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:56:53.005][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:56:53.008][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:56:53.012][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:56:53.028][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:56:53.041][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:56:53.044][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:56:53.047][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:56:53.055][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:56:53.059][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:56:53.062][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:56:53.066][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:56:53.069][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:56:53.073][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:56:53.076][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:56:53.079][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:56:53.082][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:56:53.095][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:56:53.099][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:56:53.103][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:56:53.107][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:56:53.110][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:56:53.114][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:56:53.142][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:56:53.146][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:56:53.166][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:56:53.182][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:56:53.186][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:56:53.189][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:56:53.192][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:56:53.203][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:56:53.206][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:56:53.210][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:56:53.213][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:53.236][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:53.239][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:56:53.243][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:56:53.246][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:56:53.250][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:56:53.262][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:56:53.266][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:56:53.280][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:56:53.292][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:56:53.296][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:56:53.299][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:56:53.303][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:56:53.306][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:56:53.309][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:56:53.312][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:56:53.331][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:56:53.334][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:56:53.338][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:53.346][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:53.348][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.357][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:53.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:53.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:53.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:53.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:53.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:53.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:53.970][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:53.974][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:56:53.979][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:53.994][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:56:53.997][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:54.000][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:54.011][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:54.014][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:54.017][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:54.028][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:56:54.031][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:56:54.034][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:54.049][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:54.052][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:56:54.055][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:56:54.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:56:54.071][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:54.073][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:54.073][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:54.073][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:54.076][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:56:54.087][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:54.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:54.094][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:54.097][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:54.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:54.114][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:54.117][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:54.117][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:56:54.120][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:54.136][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:54.140][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:54.143][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:56:54.143][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:56:54.163][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:54.167][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:54.182][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:56:54.187][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:54.200][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:54.206][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:54.226][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:56:54.242][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:56:54.245][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:56:54.250][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:56:54.263][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:54.266][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:54.280][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:56:54.283][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:56:54.287][biodb::testThat]
biodb.INFO [2025-03-31 23:56:54.299][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-03-31 23:56:54.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:54.305][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:54.323][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:56:54.353][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:54.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:56:54.365][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:54.369][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:56:54.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:54.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:54.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:54.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-31 23:56:54.824][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-31 23:56:55.225][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:55.230][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2025-03-31 23:56:55.239][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2025-03-31 23:56:55.420][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:56:55.423][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:56:55.426][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:56:55.428][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:56:55.430][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:55.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:55.434][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:55.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:55.438][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:56:55.448][biodb::testContext]
biodb.INFO [2025-03-31 23:56:55.454][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:55.458][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-03-31 23:56:55.461][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:56:55.463][biodb::testContext]
biodb.INFO [2025-03-31 23:56:55.468][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:55.471][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:55.479][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:55.482][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:56:55.484][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.493][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:56:55.495][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.504][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:56:55.506][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.530][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:56:55.533][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:56:55.535][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:56:55.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.565][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:56:55.569][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:56:55.583][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.591][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:56:55.603][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:56:55.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.625][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:56:55.637][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:56:55.640][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:56:55.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.649][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:56:55.651][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.659][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:56:55.661][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:56:55.664][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:56:55.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.677][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:55.680][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:56:55.683][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:56:55.685][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:56:55.697][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:56:55.700][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:56:55.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.722][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:56:55.725][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:56:55.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.733][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:56:55.736][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:56:55.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.783][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:56:55.786][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:56:55.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.813][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:56:55.815][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:56:55.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.839][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:56:55.841][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:56:55.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.850][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:56:55.852][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:56:55.877][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:56:55.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.886][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:56:55.899][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:56:55.901][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:56:55.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:55.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:55.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:55.922][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:56:55.926][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:55.940][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:56:55.942][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:55.944][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:55.947][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:55.949][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:55.963][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:55.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:55.967][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:55.970][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:55.989][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:55.994][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:56:55.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:55.999][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.001][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.011][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:56.011][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:56.011][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:56.011][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:56.011][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:56.021][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:56.023][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:56.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.059][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.062][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.064][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:56.068][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:56.080][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.082][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.087][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:56:56.092][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.094][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:56.097][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:56.116][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.118][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.120][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.137][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:56.140][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:56.142][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.144][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:56:56.158][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:56.160][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.163][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.165][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:56.165][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:56.165][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:56.165][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:56:56.165][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:56:56.179][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:56.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:56.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.206][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.209][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.221][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:56.231][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:56.234][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.236][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.239][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:56:56.250][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.252][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:56:56.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:56.268][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.270][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.272][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.275][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.285][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:56:56.288][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:56.290][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.293][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:56:56.304][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:56.307][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.309][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.311][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:56.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.338][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:56.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.353][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.355][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.357][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:56.359][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:56.369][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.372][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.375][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:56:56.392][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.395][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:56:56.398][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.400][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:56.414][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.416][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.419][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.433][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.436][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:56:56.438][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:56.440][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.453][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:56:56.455][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:56.458][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.460][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:56.462][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.475][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:56:56.477][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.481][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:56.491][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:56.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:56.497][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:56.500][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.540][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:56.543][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:56.545][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:56.548][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:56:56.551][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:56.560][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:56.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:56.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:56.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:56.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:56.957][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:56:56.960][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:56:56.964][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:56:56.979][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:56:56.982][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:56.992][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:56:56.995][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:56.999][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:57.002][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:56:57.006][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:56:57.011][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:57.015][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:56:57.054][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:56:57.058][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:56:57.061][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:56:57.071][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:56:57.074][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:56:57.086][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:56:57.089][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:57.093][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:56:57.107][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:56:57.112][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:56:57.116][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:56:57.132][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:56:57.137][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:56:57.150][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:56:57.177][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:56:57.180][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:56:57.184][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:56:57.194][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:56:57.198][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:56:57.201][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:56:57.211][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:56:57.215][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:56:57.226][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:56:57.229][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:56:57.251][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:56:57.255][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:56:57.275][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:56:57.278][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:56:57.282][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:56:57.285][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:56:57.300][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:56:57.304][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:56:57.307][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:56:57.322][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:56:57.326][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:56:57.329][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:56:57.344][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:56:57.348][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:56:57.351][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:56:57.365][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:56:57.369][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:56:57.372][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:56:57.386][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:56:57.390][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:56:57.405][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:56:57.420][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:56:57.424][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:56:57.427][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:56:57.438][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:56:57.442][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:56:57.452][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:56:57.456][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:56:57.460][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:56:57.472][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:56:57.476][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:57.480][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:57.483][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:56:57.486][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:56:57.502][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:56:57.505][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:56:57.509][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:56:57.512][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:56:57.519][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:56:57.537][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:56:57.540][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:56:57.544][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:56:57.557][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:56:57.561][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:56:57.564][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:56:57.578][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:56:57.581][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:56:57.584][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:56:57.602][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:56:57.604][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:56:57.606][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.621][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:57.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:57.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:57.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:57.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:57.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:57.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:57.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:58.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:58.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:58.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:58.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:58.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:58.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:58.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:58.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:58.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:58.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:58.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:58.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:58.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:58.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:58.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:58.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:58.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:58.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:58.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:58.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:58.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:56:58.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:58.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:58.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:58.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:58.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:58.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:58.103][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:56:58.112][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:56:58.117][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:58.119][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:56:58.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:58.133][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:56:58.135][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:58.138][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:56:58.144][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:58.147][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:56:58.150][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:56:58.153][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:56:58.163][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:58.165][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:56:58.169][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:56:58.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:56:58.184][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:56:58.187][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:56:58.187][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:56:58.187][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:56:58.190][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:56:58.196][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:58.198][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:58.201][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:56:58.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:56:58.213][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:56:58.215][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:56:58.218][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:58.218][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:56:58.221][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:56:58.233][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:56:58.236][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:56:58.238][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:56:58.238][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:56:58.241][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:56:58.256][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:56:58.260][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:56:58.271][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:56:58.276][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:56:58.289][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:56:58.298][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:56:58.308][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:56:58.311][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:56:58.315][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:56:58.328][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:58.331][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:56:58.334][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:56:58.343][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:56:58.347][biodb::testThat]
biodb.INFO [2025-03-31 23:56:58.350][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-03-31 23:56:58.369][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:56:58.372][biodb::testThat]
biodb.DEBUG[2025-03-31 23:56:58.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:56:58.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:58.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:56:58.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:58.425][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:56:58.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:56:58.449][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:56:58.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-31 23:56:58.467][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:56:58.481][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-03-31 23:56:58.502][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-03-31 23:56:58.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:56:58.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-03-31 23:56:58.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-31 23:56:58.526][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-31 23:56:58.529][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:56:58.542][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:56:58.545][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-31 23:56:58.548][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-31 23:56:58.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:58.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:58.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:58.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:58.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:58.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:58.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:56:58.623][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2025-03-31 23:56:58.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-31 23:56:58.666][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-31 23:56:58.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2025-03-31 23:56:59.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2025-03-31 23:56:59.796][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-31 23:56:59.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2025-03-31 23:56:59.809][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2025-03-31 23:56:59.815][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2025-03-31 23:56:59.821][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-31 23:56:59.824][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:56:59.826][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:56:59.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:56:59.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:56:59.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:56:59.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:56:59.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:56:59.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:56:59.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:56:59.860][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:59.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:59.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:56:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:56:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:59.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:59.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:56:59.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:56:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:59.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:59.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:56:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:56:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:56:59.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:56:59.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:56:59.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:56:59.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:59.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:59.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:56:59.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:56:59.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:56:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:57:00.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:57:00.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:57:00.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:57:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:57:00.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:57:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:57:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:57:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.087][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:57:00.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:57:00.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.101][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:57:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:57:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:57:00.126][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:57:00.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:57:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:57:00.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:57:00.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:57:00.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:57:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:57:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:57:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:57:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:57:00.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:57:00.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:57:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:57:00.399][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-03-31 23:57:00.417][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:57:00.419][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:57:00.434][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:57:00.436][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:57:00.439][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:57:00.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:57:00.453][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:57:00.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:57:00.457][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:57:00.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 361 ]
> 
> proc.time()
   user  system elapsed 
 35.791   1.682  56.345

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

name	user	system	elapsed
ChebiConn	4.488	1.205	6.483
ChebiEntry	0.765	0.019	0.788